Wall clock time and date at job start Mon Mar 30 2020 03:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99863 * 2 1 4 4 H 1.48497 * 109.46901 * 269.99741 * 3 2 1 5 5 H 1.48488 * 109.47487 * 30.00181 * 3 2 1 6 6 H 1.48503 * 109.47026 * 150.00561 * 3 2 1 7 7 C 1.37874 * 120.00305 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99767 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 179.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46623 * 179.97438 * 10 9 7 12 12 N 1.46906 * 109.46897 * 179.97438 * 11 10 9 13 13 C 1.46898 * 110.99888 * 180.02562 * 12 11 10 14 14 H 1.08995 * 110.05304 * 325.70271 * 13 12 11 15 15 C 1.54384 * 110.07147 * 87.19173 * 13 12 11 16 16 C 1.54915 * 104.22878 * 142.77777 * 15 13 12 17 17 C 1.54992 * 102.81932 * 322.28065 * 16 15 13 18 18 C 1.53483 * 110.06837 * 204.21688 * 13 12 11 19 19 C 1.52569 * 121.05386 * 96.56768 * 18 13 12 20 20 C 1.52550 * 121.08950 * 24.85137 * 18 13 12 21 21 H 0.97002 * 120.00008 * 359.97438 * 1 2 3 22 22 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 23 23 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 24 24 H 1.09000 * 109.47050 * 299.99952 * 10 9 7 25 25 H 1.09001 * 109.46801 * 60.00064 * 10 9 7 26 26 H 1.09000 * 109.47486 * 299.99829 * 11 10 9 27 27 H 1.09001 * 109.47362 * 60.00551 * 11 10 9 28 28 H 1.00896 * 111.00031 * 56.04700 * 12 11 10 29 29 H 1.09007 * 110.47815 * 261.46505 * 15 13 12 30 30 H 1.08999 * 110.48219 * 24.09100 * 15 13 12 31 31 H 1.09007 * 110.74588 * 80.61057 * 16 15 13 32 32 H 1.08995 * 110.74810 * 203.76456 * 16 15 13 33 33 H 1.09002 * 110.51121 * 156.21423 * 17 16 15 34 34 H 1.08997 * 110.51215 * 278.78722 * 17 16 15 35 35 H 1.08995 * 117.51062 * 356.97591 * 19 18 13 36 36 H 1.08998 * 117.50913 * 142.05911 * 19 18 13 37 37 H 1.09005 * 117.51080 * 217.88492 * 20 18 13 38 38 H 1.08995 * 117.50929 * 2.93364 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4402 0.6999 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6366 0.0001 11 6 5.5515 -2.6365 -0.0012 12 7 6.0412 -4.0215 -0.0004 13 6 7.5097 -4.0607 -0.0010 14 1 7.9056 -3.2255 -0.5786 15 6 8.0418 -4.0028 1.4471 16 6 9.2709 -4.9457 1.4391 17 6 8.8147 -6.0973 0.5075 18 6 8.0009 -5.3894 -0.5916 19 6 8.4081 -5.4961 -2.0581 20 6 7.1358 -6.1879 -1.5618 21 1 -0.4850 0.8401 0.0004 22 1 3.8753 -0.6796 0.8894 23 1 3.8746 -0.6807 -0.8905 24 1 3.6585 -3.1502 0.8903 25 1 3.6578 -3.1505 -0.8897 26 1 5.9142 -2.1230 -0.8916 27 1 5.9156 -2.1224 0.8884 28 1 5.6651 -4.5384 -0.7810 29 1 8.3423 -2.9866 1.7027 30 1 7.2875 -4.3654 2.1454 31 1 10.1437 -4.4389 1.0275 32 1 9.4794 -5.3168 2.4425 33 1 9.6779 -6.6043 0.0761 34 1 8.1904 -6.8052 1.0527 35 1 8.2891 -4.6086 -2.6795 36 1 9.2635 -6.1275 -2.2984 37 1 7.1543 -7.2744 -1.4758 38 1 6.1795 -5.7557 -1.8564 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595009254.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:11 Heat of formation + Delta-G solvation = -16.085241 kcal Electronic energy + Delta-G solvation = -15176.471483 eV Core-core repulsion = 12824.660819 eV Total energy + Delta-G solvation = -2351.810663 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.52153 -37.09723 -35.29254 -34.76309 -33.02920 -29.24223 -27.51104 -25.81665 -23.99207 -23.18772 -21.97257 -21.36489 -19.49702 -18.89226 -17.04672 -16.73709 -16.35664 -16.16992 -15.75586 -15.06638 -14.72685 -14.63445 -13.98024 -13.66244 -13.44336 -13.37717 -12.87331 -12.54567 -12.44881 -12.24466 -11.92628 -11.85407 -11.73574 -11.60986 -11.46535 -11.40717 -11.22939 -11.11026 -10.77537 -10.67463 -9.33242 -8.30410 -6.34936 1.34679 1.37118 1.49468 2.35604 2.75951 3.04699 3.31515 3.49249 3.72052 3.90691 4.04593 4.18774 4.28435 4.34652 4.36657 4.48000 4.64343 4.75808 4.77304 4.82755 4.84736 4.96093 4.98265 5.03891 5.10221 5.13478 5.16867 5.20933 5.23344 5.31298 5.47915 5.51788 5.58583 5.64998 6.15409 6.28925 6.48741 6.73118 7.29750 8.86702 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.045955 B = 0.004894 C = 0.004706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.150381 B = 5719.398246 C = 5948.313566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.003 3.997 3 Si 0.954 3.046 4 H -0.265 1.265 5 H -0.282 1.282 6 H -0.247 1.247 7 C -0.535 4.535 8 H 0.029 0.971 9 C -0.010 4.010 10 C -0.090 4.090 11 C 0.070 3.930 12 N -0.689 5.689 13 C 0.112 3.888 14 H 0.039 0.961 15 C -0.115 4.115 16 C -0.115 4.115 17 C -0.081 4.081 18 C -0.139 4.139 19 C -0.163 4.163 20 C -0.172 4.172 21 H 0.267 0.733 22 H 0.020 0.980 23 H 0.018 0.982 24 H 0.049 0.951 25 H 0.045 0.955 26 H 0.027 0.973 27 H 0.067 0.933 28 H 0.340 0.660 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.087 0.913 36 H 0.112 0.888 37 H 0.107 0.893 38 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.274 -10.332 -1.013 24.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.194 4.194 3 Si 0.777 3.223 4 H -0.190 1.190 5 H -0.208 1.208 6 H -0.170 1.170 7 C -0.573 4.573 8 H 0.047 0.953 9 C -0.047 4.047 10 C -0.128 4.128 11 C -0.059 4.059 12 N -0.322 5.322 13 C 0.002 3.998 14 H 0.057 0.943 15 C -0.153 4.153 16 C -0.153 4.153 17 C -0.118 4.118 18 C -0.139 4.139 19 C -0.200 4.200 20 C -0.209 4.209 21 H 0.076 0.924 22 H 0.038 0.962 23 H 0.036 0.964 24 H 0.067 0.933 25 H 0.064 0.936 26 H 0.045 0.955 27 H 0.086 0.914 28 H 0.161 0.839 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.086 0.914 35 H 0.106 0.894 36 H 0.130 0.870 37 H 0.126 0.874 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 22.072 -10.294 -0.333 24.357 hybrid contribution -0.472 1.073 -0.977 1.526 sum 21.600 -9.221 -1.310 23.523 Atomic orbital electron populations 1.70076 1.08365 1.28223 1.52676 1.26063 0.95657 1.03667 0.94011 0.85601 0.79460 0.77976 0.79260 1.19041 1.20792 1.17029 1.21509 0.92213 0.93093 1.50469 0.95261 1.19485 0.93857 0.94960 0.96443 1.21266 0.93925 0.96971 1.00658 1.21926 0.94608 0.89389 0.99995 1.60699 1.07751 1.13264 1.50504 1.21698 0.86709 0.94808 0.96570 0.94292 1.22418 0.97697 0.99769 0.95418 1.22424 0.96921 0.95898 1.00066 1.21842 0.98445 0.96999 0.94545 1.21964 1.03230 0.96995 0.91725 1.23076 0.99140 1.02872 0.94883 1.22931 0.95026 0.99810 1.03145 0.92447 0.96166 0.96395 0.93262 0.93636 0.95451 0.91411 0.83850 0.92067 0.91667 0.90849 0.90351 0.90320 0.91364 0.89417 0.87016 0.87428 0.89445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.18 13.96 21.45 0.30 -60.88 16 2 C 0.00 0.15 5.47 84.65 0.46 0.61 16 3 Si 0.95 45.15 27.47 68.60 1.88 47.03 16 4 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 5 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 6 H -0.25 -10.85 6.54 99.48 0.65 -10.20 16 7 C -0.53 -32.02 9.66 25.60 0.25 -31.78 16 8 H 0.03 1.93 7.99 -2.91 -0.02 1.90 16 9 C -0.01 -0.46 4.04 29.85 0.12 -0.34 16 10 C -0.09 -3.70 5.41 30.60 0.17 -3.53 16 11 C 0.07 2.30 5.51 86.30 0.48 2.78 16 12 N -0.69 -19.73 6.27 -488.30 -3.06 -22.79 16 13 C 0.11 2.67 3.10 45.55 0.14 2.81 16 14 H 0.04 0.98 7.82 -2.39 -0.02 0.96 16 15 C -0.11 -2.53 6.48 31.72 0.21 -2.32 16 16 C -0.12 -1.91 6.91 31.93 0.22 -1.69 16 17 C -0.08 -1.34 6.59 31.61 0.21 -1.13 16 18 C -0.14 -2.71 2.35 -51.97 -0.12 -2.83 16 19 C -0.16 -2.75 10.24 30.48 0.31 -2.44 16 20 C -0.17 -3.21 9.65 30.47 0.29 -2.92 16 21 H 0.27 15.89 8.31 -92.71 -0.77 15.12 16 22 H 0.02 0.96 7.20 -2.39 -0.02 0.94 16 23 H 0.02 0.83 7.57 -2.39 -0.02 0.81 16 24 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 25 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 26 H 0.03 0.87 8.07 -2.39 -0.02 0.85 16 27 H 0.07 2.22 8.13 -2.39 -0.02 2.20 16 28 H 0.34 9.41 5.95 -89.70 -0.53 8.87 16 29 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 30 H 0.06 1.64 8.05 -2.39 -0.02 1.62 16 31 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 32 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.08 1.05 8.11 -2.39 -0.02 1.03 16 34 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.11 1.75 8.14 -2.38 -0.02 1.73 16 38 H 0.09 1.80 6.28 -2.39 -0.01 1.79 16 Total: -1.00 -66.06 300.62 2.27 -63.79 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: 0.42 Total: 15.64 kcal Atomic # 6 Polarization: -45.52 SS G_CDS: 2.73 Total: -42.79 kcal Atomic # 7 Polarization: -80.91 SS G_CDS: -2.76 Total: -83.68 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 1.88 Total: 47.03 kcal Total: -66.06 2.27 -63.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595009254.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.706 kcal (2) G-P(sol) polarization free energy of solvation -66.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds