Wall clock time and date at job start Mon Mar 30 2020 02:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00334 * 2 1 4 4 H 1.48496 * 109.47110 * 270.00164 * 3 2 1 5 5 H 1.48505 * 109.46845 * 29.99788 * 3 2 1 6 6 H 1.48497 * 109.47329 * 149.99960 * 3 2 1 7 7 C 1.37881 * 119.99943 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99508 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00196 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.47221 * 180.02562 * 9 7 2 11 11 N 1.46896 * 109.47169 * 180.02562 * 10 9 7 12 12 C 1.44358 * 111.06962 * 64.85777 * 11 10 9 13 13 C 1.52721 * 106.00243 * 224.13964 * 12 11 10 14 14 C 1.46402 * 114.00810 * 270.01901 * 13 12 11 15 15 C 1.56157 * 107.93057 * 59.66496 * 14 13 12 16 16 C 1.52891 * 115.79505 * 145.14790 * 15 14 13 17 17 C 1.52704 * 116.09216 * 77.46030 * 15 14 13 18 18 C 1.50442 * 114.93648 * 290.75446 * 15 14 13 19 19 C 1.48373 * 111.00098 * 189.99775 * 11 10 9 20 20 H 0.97002 * 120.00088 * 359.97438 * 1 2 3 21 21 H 1.09006 * 109.46756 * 60.00361 * 9 7 2 22 22 H 1.09003 * 109.47079 * 300.00399 * 9 7 2 23 23 H 1.08996 * 109.47363 * 59.99516 * 10 9 7 24 24 H 1.09008 * 109.46866 * 300.00395 * 10 9 7 25 25 H 1.09008 * 110.25725 * 104.97812 * 12 11 10 26 26 H 1.08990 * 110.07052 * 343.21053 * 12 11 10 27 27 H 1.09002 * 108.55318 * 148.89227 * 13 12 11 28 28 H 1.09003 * 108.55368 * 31.14494 * 13 12 11 29 29 H 1.09003 * 109.76342 * 179.27220 * 14 13 12 30 30 H 1.08996 * 109.76488 * 300.05712 * 14 13 12 31 31 H 1.08995 * 117.51269 * 0.85182 * 16 15 14 32 32 H 1.08999 * 117.50952 * 145.94779 * 16 15 14 33 33 H 1.09007 * 117.49329 * 213.59310 * 17 15 14 34 34 H 1.08994 * 117.50340 * 358.61019 * 17 15 14 35 35 H 1.08993 * 108.34719 * 210.06592 * 18 15 14 36 36 H 1.09004 * 108.35031 * 327.13667 * 18 15 14 37 37 H 1.08999 * 108.98313 * 74.87457 * 19 11 10 38 38 H 1.09001 * 108.98560 * 316.15786 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0215 -2.6367 0.0001 11 7 5.4904 -2.6367 0.0001 12 6 6.0094 -2.0643 1.2195 13 6 7.1439 -1.1329 0.7979 14 6 8.4553 -1.7808 0.7378 15 6 8.3685 -2.9468 -0.2972 16 6 9.6327 -3.2033 -1.1181 17 6 8.4151 -2.5430 -1.7692 18 6 7.5172 -4.1115 0.1293 19 6 6.0221 -4.0009 -0.2402 20 1 -0.4850 0.8401 0.0004 21 1 3.8752 -0.6798 0.8895 22 1 3.8745 -0.6809 -0.8905 23 1 3.6577 -3.1507 -0.8896 24 1 3.6583 -3.1503 0.8904 25 1 6.3916 -2.8493 1.8722 26 1 5.2293 -1.4986 1.7288 27 1 7.1970 -0.3075 1.5079 28 1 6.9119 -0.7274 -0.1869 29 1 9.2083 -1.0600 0.4190 30 1 8.7158 -2.1775 1.7191 31 1 10.4995 -2.5737 -0.9176 32 1 9.8536 -4.2345 -1.3934 33 1 7.8354 -3.1400 -2.4734 34 1 8.4814 -1.4793 -1.9975 35 1 7.9181 -5.0155 -0.3291 36 1 7.5964 -4.2164 1.2114 37 1 5.8981 -4.2491 -1.2943 38 1 5.4551 -4.7132 0.3592 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599673756.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:16 Heat of formation + Delta-G solvation = 19.425597 kcal Electronic energy + Delta-G solvation = -15943.626763 eV Core-core repulsion = 13593.355965 eV Total energy + Delta-G solvation = -2350.270798 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.60026 -36.62486 -33.25952 -32.68417 -31.08190 -28.87297 -26.06504 -24.27743 -23.10088 -22.14002 -20.42626 -19.58022 -18.35579 -16.88725 -15.81444 -15.55146 -14.64421 -14.48767 -14.02244 -13.76656 -13.33381 -13.02485 -12.74873 -12.55750 -12.26996 -11.85139 -11.44680 -11.40592 -11.01868 -10.88229 -10.69091 -10.46928 -10.33656 -10.08602 -9.84475 -9.73176 -9.63246 -9.41072 -9.14337 -8.49845 -7.65590 -6.01694 -3.99342 3.34793 3.41491 3.46861 3.86124 4.42650 4.48920 4.69036 4.86258 4.94196 5.09936 5.32087 5.33367 5.45127 5.48676 5.59217 5.67150 5.68347 5.85726 5.88818 5.98818 6.05457 6.14595 6.20486 6.22192 6.24404 6.34914 6.36295 6.47172 6.53374 6.74174 6.84145 7.22429 7.44963 7.72227 7.78381 7.93568 8.56626 9.02865 9.61224 11.11806 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.041035 B = 0.006910 C = 0.006437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.187339 B = 4050.932424 C = 4348.565366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.067 3.933 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.264 1.264 7 C -0.520 4.520 8 H 0.070 0.930 9 C -0.006 4.006 10 C 0.069 3.931 11 N -0.536 5.536 12 C 0.055 3.945 13 C -0.117 4.117 14 C -0.075 4.075 15 C -0.104 4.104 16 C -0.188 4.188 17 C -0.155 4.155 18 C -0.079 4.079 19 C 0.061 3.939 20 H 0.262 0.738 21 H 0.016 0.984 22 H 0.019 0.981 23 H 0.064 0.936 24 H 0.023 0.977 25 H 0.039 0.961 26 H 0.076 0.924 27 H 0.048 0.952 28 H 0.075 0.925 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.066 0.934 38 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.201 -5.706 0.470 19.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.134 4.134 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.189 1.189 7 C -0.559 4.559 8 H 0.088 0.912 9 C -0.044 4.044 10 C -0.057 4.057 11 N -0.261 5.261 12 C -0.074 4.074 13 C -0.155 4.155 14 C -0.113 4.113 15 C -0.104 4.104 16 C -0.225 4.225 17 C -0.192 4.192 18 C -0.116 4.116 19 C -0.067 4.067 20 H 0.072 0.928 21 H 0.034 0.966 22 H 0.038 0.962 23 H 0.082 0.918 24 H 0.042 0.958 25 H 0.057 0.943 26 H 0.094 0.906 27 H 0.067 0.933 28 H 0.094 0.906 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.107 0.893 32 H 0.105 0.895 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 18.195 -5.305 0.095 18.953 hybrid contribution 0.019 0.366 0.584 0.690 sum 18.214 -4.939 0.679 18.884 Atomic orbital electron populations 1.69918 1.06325 1.26855 1.51338 1.24993 0.94692 0.99150 0.94535 0.86757 0.80353 0.83499 0.78576 1.20281 1.21559 1.18891 1.21111 0.89552 0.94439 1.50784 0.91204 1.19585 0.96237 0.91829 0.96727 1.22161 0.83940 1.00125 0.99500 1.61910 1.09172 1.19706 1.35300 1.21728 0.97255 0.97251 0.91145 1.20407 0.94176 0.98170 1.02727 1.20561 0.97717 0.95623 0.97359 1.21289 0.98226 0.97746 0.93161 1.23139 0.92286 1.01350 1.05752 1.22753 1.00105 1.00884 0.95419 1.20782 0.94008 0.96013 1.00831 1.22526 0.93227 0.90111 1.00786 0.92781 0.96562 0.96230 0.91792 0.95820 0.94275 0.90592 0.93304 0.90616 0.92213 0.92405 0.89303 0.89505 0.89051 0.89130 0.92095 0.92248 0.91506 0.95052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.27 13.96 55.43 0.77 -27.50 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 3 Si 0.88 22.17 27.47 -169.99 -4.67 17.50 16 4 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.26 -6.40 6.54 56.52 0.37 -6.03 16 7 C -0.52 -15.05 9.66 -34.44 -0.33 -15.38 16 8 H 0.07 2.16 7.99 -52.48 -0.42 1.74 16 9 C -0.01 -0.15 3.98 -27.88 -0.11 -0.26 16 10 C 0.07 1.43 4.72 -3.83 -0.02 1.41 16 11 N -0.54 -9.27 3.99 -234.73 -0.94 -10.20 16 12 C 0.05 0.89 5.14 -5.33 -0.03 0.86 16 13 C -0.12 -1.69 5.18 -30.02 -0.16 -1.85 16 14 C -0.08 -0.91 5.27 -28.18 -0.15 -1.06 16 15 C -0.10 -1.25 1.57 -154.30 -0.24 -1.49 16 16 C -0.19 -1.96 9.83 -26.76 -0.26 -2.22 16 17 C -0.15 -1.86 9.63 -26.86 -0.26 -2.12 16 18 C -0.08 -0.95 4.86 -27.27 -0.13 -1.08 16 19 C 0.06 0.88 5.61 -2.27 -0.01 0.87 16 20 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 21 H 0.02 0.40 5.43 -51.93 -0.28 0.12 16 22 H 0.02 0.49 7.57 -51.93 -0.39 0.09 16 23 H 0.06 1.33 8.08 -51.93 -0.42 0.91 16 24 H 0.02 0.49 8.13 -51.92 -0.42 0.07 16 25 H 0.04 0.58 6.17 -51.92 -0.32 0.26 16 26 H 0.08 1.38 5.87 -51.93 -0.30 1.07 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.08 1.24 7.72 -51.93 -0.40 0.84 16 29 H 0.06 0.67 8.06 -51.93 -0.42 0.25 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.09 0.83 8.08 -51.93 -0.42 0.41 16 33 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.06 0.65 7.89 -51.93 -0.41 0.24 16 36 H 0.06 0.71 6.92 -51.93 -0.36 0.35 16 37 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.03 0.45 7.99 -51.93 -0.42 0.03 16 LS Contribution 290.16 15.07 4.37 4.37 Total: -1.00 -30.09 290.16 -8.95 -39.04 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: -6.69 Total: -2.78 kcal Atomic # 6 Polarization: -18.63 SS G_CDS: -1.80 Total: -20.43 kcal Atomic # 7 Polarization: -37.53 SS G_CDS: -0.16 Total: -37.70 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.67 Total: 17.50 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -30.09 -8.95 -39.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599673756.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.463 kcal (2) G-P(sol) polarization free energy of solvation -30.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds