Wall clock time and date at job start Mon Mar 30 2020 02:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00334 * 2 1 4 4 H 1.48496 * 109.47110 * 270.00164 * 3 2 1 5 5 H 1.48505 * 109.46845 * 29.99788 * 3 2 1 6 6 H 1.48497 * 109.47329 * 149.99960 * 3 2 1 7 7 C 1.37881 * 119.99943 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99508 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00196 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.47221 * 180.02562 * 9 7 2 11 11 N 1.46896 * 109.47169 * 180.02562 * 10 9 7 12 12 C 1.44358 * 111.06962 * 64.85777 * 11 10 9 13 13 C 1.52721 * 106.00243 * 224.13964 * 12 11 10 14 14 C 1.46402 * 114.00810 * 270.01901 * 13 12 11 15 15 C 1.56157 * 107.93057 * 59.66496 * 14 13 12 16 16 C 1.52891 * 115.79505 * 145.14790 * 15 14 13 17 17 C 1.52704 * 116.09216 * 77.46030 * 15 14 13 18 18 C 1.50442 * 114.93648 * 290.75446 * 15 14 13 19 19 C 1.48373 * 111.00098 * 189.99775 * 11 10 9 20 20 H 0.97002 * 120.00088 * 359.97438 * 1 2 3 21 21 H 1.09006 * 109.46756 * 60.00361 * 9 7 2 22 22 H 1.09003 * 109.47079 * 300.00399 * 9 7 2 23 23 H 1.08996 * 109.47363 * 59.99516 * 10 9 7 24 24 H 1.09008 * 109.46866 * 300.00395 * 10 9 7 25 25 H 1.09008 * 110.25725 * 104.97812 * 12 11 10 26 26 H 1.08990 * 110.07052 * 343.21053 * 12 11 10 27 27 H 1.09002 * 108.55318 * 148.89227 * 13 12 11 28 28 H 1.09003 * 108.55368 * 31.14494 * 13 12 11 29 29 H 1.09003 * 109.76342 * 179.27220 * 14 13 12 30 30 H 1.08996 * 109.76488 * 300.05712 * 14 13 12 31 31 H 1.08995 * 117.51269 * 0.85182 * 16 15 14 32 32 H 1.08999 * 117.50952 * 145.94779 * 16 15 14 33 33 H 1.09007 * 117.49329 * 213.59310 * 17 15 14 34 34 H 1.08994 * 117.50340 * 358.61019 * 17 15 14 35 35 H 1.08993 * 108.34719 * 210.06592 * 18 15 14 36 36 H 1.09004 * 108.35031 * 327.13667 * 18 15 14 37 37 H 1.08999 * 108.98313 * 74.87457 * 19 11 10 38 38 H 1.09001 * 108.98560 * 316.15786 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0215 -2.6367 0.0001 11 7 5.4904 -2.6367 0.0001 12 6 6.0094 -2.0643 1.2195 13 6 7.1439 -1.1329 0.7979 14 6 8.4553 -1.7808 0.7378 15 6 8.3685 -2.9468 -0.2972 16 6 9.6327 -3.2033 -1.1181 17 6 8.4151 -2.5430 -1.7692 18 6 7.5172 -4.1115 0.1293 19 6 6.0221 -4.0009 -0.2402 20 1 -0.4850 0.8401 0.0004 21 1 3.8752 -0.6798 0.8895 22 1 3.8745 -0.6809 -0.8905 23 1 3.6577 -3.1507 -0.8896 24 1 3.6583 -3.1503 0.8904 25 1 6.3916 -2.8493 1.8722 26 1 5.2293 -1.4986 1.7288 27 1 7.1970 -0.3075 1.5079 28 1 6.9119 -0.7274 -0.1869 29 1 9.2083 -1.0600 0.4190 30 1 8.7158 -2.1775 1.7191 31 1 10.4995 -2.5737 -0.9176 32 1 9.8536 -4.2345 -1.3934 33 1 7.8354 -3.1400 -2.4734 34 1 8.4814 -1.4793 -1.9975 35 1 7.9181 -5.0155 -0.3291 36 1 7.5964 -4.2164 1.2114 37 1 5.8981 -4.2491 -1.2943 38 1 5.4551 -4.7132 0.3592 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599673756.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:16 Heat of formation + Delta-G solvation = 1.843360 kcal Electronic energy + Delta-G solvation = -15944.389186 eV Core-core repulsion = 13593.355965 eV Total energy + Delta-G solvation = -2351.033221 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.68745 -37.88035 -35.20080 -33.96958 -32.73192 -30.34029 -27.44066 -25.83587 -24.40001 -22.99541 -22.13922 -20.94548 -19.36875 -18.98283 -17.02161 -16.75479 -16.32952 -15.79864 -15.65891 -15.00204 -14.73069 -14.54055 -14.12360 -13.89422 -13.49742 -13.34065 -13.16855 -12.68619 -12.30048 -12.15994 -11.97135 -11.93324 -11.70102 -11.58401 -11.47015 -11.35021 -11.25153 -10.78403 -10.71179 -10.36679 -9.04145 -8.30877 -6.34693 1.35583 1.36344 1.49569 2.35559 2.96246 3.04840 3.11695 3.74490 3.94040 4.02315 4.10989 4.22638 4.28339 4.38787 4.46487 4.51801 4.59075 4.73049 4.78587 4.85793 4.89381 4.96227 5.00260 5.14795 5.17121 5.20452 5.27760 5.30790 5.39294 5.40009 5.48721 5.50895 5.60984 5.65183 6.21491 6.32396 6.48315 6.73271 7.30064 8.85983 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.041035 B = 0.006910 C = 0.006437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.187339 B = 4050.932424 C = 4348.565366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.008 3.992 3 Si 0.951 3.049 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.248 1.248 7 C -0.533 4.533 8 H 0.031 0.969 9 C 0.004 3.996 10 C 0.082 3.918 11 N -0.539 5.539 12 C 0.053 3.947 13 C -0.110 4.110 14 C -0.072 4.072 15 C -0.117 4.117 16 C -0.165 4.165 17 C -0.169 4.169 18 C -0.074 4.074 19 C 0.059 3.941 20 H 0.267 0.733 21 H 0.020 0.980 22 H 0.017 0.983 23 H 0.056 0.944 24 H 0.015 0.985 25 H 0.056 0.944 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.101 0.899 32 H 0.099 0.901 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.079 0.921 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.173 -5.431 0.730 21.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.189 4.189 3 Si 0.774 3.226 4 H -0.193 1.193 5 H -0.208 1.208 6 H -0.172 1.172 7 C -0.572 4.572 8 H 0.050 0.950 9 C -0.034 4.034 10 C -0.046 4.046 11 N -0.264 5.264 12 C -0.075 4.075 13 C -0.148 4.148 14 C -0.110 4.110 15 C -0.117 4.117 16 C -0.202 4.202 17 C -0.206 4.206 18 C -0.111 4.111 19 C -0.068 4.068 20 H 0.076 0.924 21 H 0.038 0.962 22 H 0.035 0.965 23 H 0.075 0.925 24 H 0.033 0.967 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.119 0.881 32 H 0.117 0.883 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.098 0.902 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 21.189 -5.048 0.357 21.785 hybrid contribution -0.962 0.194 0.491 1.097 sum 20.227 -4.854 0.848 20.819 Atomic orbital electron populations 1.70062 1.08248 1.28191 1.52639 1.25953 0.95566 1.03383 0.94002 0.85648 0.79461 0.78293 0.79196 1.19317 1.20781 1.17154 1.21439 0.92021 0.93160 1.50542 0.95044 1.19431 0.93157 0.94348 0.96478 1.21840 0.86534 0.97439 0.98778 1.61876 1.06607 1.21838 1.36088 1.21768 0.97170 0.97780 0.90810 1.20334 0.94821 0.98079 1.01543 1.20541 0.96394 0.95843 0.98187 1.21344 0.99609 0.97772 0.92978 1.23186 0.91680 1.02035 1.03263 1.22737 1.01762 1.00658 0.95470 1.20738 0.92022 0.96996 1.01353 1.22621 0.95083 0.88254 1.00871 0.92432 0.96207 0.96510 0.92538 0.96669 0.92583 0.92946 0.92697 0.92687 0.91010 0.91135 0.88088 0.88272 0.89781 0.89780 0.90221 0.91674 0.91564 0.94987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.74 13.96 21.45 0.30 -60.44 16 2 C 0.01 0.47 5.47 84.66 0.46 0.93 16 3 Si 0.95 45.65 27.47 68.60 1.88 47.53 16 4 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 5 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 6 H -0.25 -11.16 6.54 99.48 0.65 -10.51 16 7 C -0.53 -31.70 9.66 25.60 0.25 -31.46 16 8 H 0.03 2.04 7.99 -2.91 -0.02 2.02 16 9 C 0.00 0.17 3.98 29.85 0.12 0.29 16 10 C 0.08 3.40 4.72 86.30 0.41 3.81 16 11 N -0.54 -18.17 3.99 -896.56 -3.58 -21.75 16 12 C 0.05 1.64 5.14 86.69 0.45 2.09 16 13 C -0.11 -2.95 5.18 28.47 0.15 -2.80 16 14 C -0.07 -1.53 5.27 29.66 0.16 -1.37 16 15 C -0.12 -2.45 1.57 -52.05 -0.08 -2.54 16 16 C -0.16 -2.84 9.83 30.57 0.30 -2.54 16 17 C -0.17 -3.71 9.63 30.51 0.29 -3.42 16 18 C -0.07 -1.56 4.86 30.24 0.15 -1.42 16 19 C 0.06 1.60 5.61 86.49 0.49 2.09 16 20 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 21 H 0.02 0.96 5.43 -2.38 -0.01 0.94 16 22 H 0.02 0.82 7.57 -2.39 -0.02 0.80 16 23 H 0.06 2.40 8.08 -2.39 -0.02 2.38 16 24 H 0.02 0.65 8.13 -2.38 -0.02 0.63 16 25 H 0.06 1.53 6.17 -2.38 -0.01 1.51 16 26 H 0.05 1.86 5.87 -2.39 -0.01 1.84 16 27 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.05 1.71 7.72 -2.39 -0.02 1.70 16 29 H 0.07 1.36 8.06 -2.39 -0.02 1.34 16 30 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.10 1.49 8.08 -2.39 -0.02 1.47 16 33 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 34 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.08 1.42 7.89 -2.39 -0.02 1.40 16 36 H 0.06 1.33 6.92 -2.38 -0.02 1.31 16 37 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.03 0.87 7.99 -2.39 -0.02 0.85 16 Total: -1.00 -65.26 290.16 2.68 -62.59 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: 0.94 Total: 8.40 kcal Atomic # 6 Polarization: -39.45 SS G_CDS: 3.13 Total: -36.32 kcal Atomic # 7 Polarization: -78.91 SS G_CDS: -3.28 Total: -82.19 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 1.88 Total: 47.53 kcal Total: -65.26 2.68 -62.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599673756.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.429 kcal (2) G-P(sol) polarization free energy of solvation -65.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds