Wall clock time and date at job start Mon Mar 30 2020 03:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99894 * 2 1 4 4 H 1.48503 * 109.46778 * 239.99544 * 3 2 1 5 5 H 1.48503 * 109.47134 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47402 * 119.99486 * 3 2 1 7 7 C 1.37876 * 119.99989 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99588 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00356 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47592 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47482 * 179.97438 * 10 9 7 12 12 N 1.46899 * 109.47254 * 179.97438 * 11 10 9 13 13 C 1.46904 * 111.00029 * 179.97438 * 12 11 10 14 14 C 1.52997 * 109.46950 * 180.02562 * 13 12 11 15 15 H 1.09005 * 110.67324 * 51.76989 * 14 13 12 16 16 C 1.54893 * 110.75974 * 288.33188 * 14 13 12 17 17 C 1.54259 * 104.19620 * 203.74660 * 16 14 13 18 18 H 1.09003 * 117.41276 * 163.59040 * 17 16 14 19 19 C 1.55469 * 118.30446 * 320.01769 * 17 16 14 20 20 C 1.53006 * 59.83754 * 93.29988 * 19 17 16 21 21 H 1.08994 * 119.29735 * 111.71485 * 20 19 17 22 22 C 1.54274 * 118.19625 * 265.85477 * 20 19 17 23 23 H 0.96996 * 119.99885 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47210 * 59.99420 * 9 7 2 25 25 H 1.09001 * 109.46665 * 299.99679 * 9 7 2 26 26 H 1.09002 * 109.47103 * 59.99616 * 10 9 7 27 27 H 1.08998 * 109.46862 * 300.00428 * 10 9 7 28 28 H 1.09002 * 109.47153 * 59.99783 * 11 10 9 29 29 H 1.09001 * 109.46832 * 299.99974 * 11 10 9 30 30 H 1.00908 * 110.99847 * 56.04959 * 12 11 10 31 31 H 1.08995 * 109.47167 * 300.00240 * 13 12 11 32 32 H 1.09003 * 109.46442 * 60.00214 * 13 12 11 33 33 H 1.09007 * 110.48269 * 322.42289 * 16 14 13 34 34 H 1.08992 * 110.48603 * 85.06175 * 16 14 13 35 35 H 1.09001 * 118.05530 * 346.16245 * 19 17 16 36 36 H 1.08998 * 117.18736 * 200.82176 * 19 17 16 37 37 H 1.09000 * 110.48418 * 283.10405 * 22 20 19 38 38 H 1.09002 * 110.59597 * 160.51535 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4804 -4.9871 0.0012 12 7 2.4350 -6.1036 0.0006 13 6 1.7347 -7.3950 0.0018 14 6 2.7597 -8.5309 0.0017 15 1 3.4866 -8.3934 0.8023 16 6 3.4647 -8.6341 -1.3736 17 6 3.9569 -10.0947 -1.4377 18 1 4.2417 -10.4859 -2.4144 19 6 4.5445 -10.7320 -0.1470 20 6 3.0614 -10.9028 -0.4823 21 1 2.6864 -11.8892 -0.7552 22 6 2.0562 -9.9049 0.1292 23 1 -0.4850 0.8400 -0.0004 24 1 0.6248 -2.5571 -0.8896 25 1 0.6242 -2.5567 0.8903 26 1 2.8720 -3.6043 0.8905 27 1 2.8720 -3.6042 -0.8894 28 1 0.8534 -5.0451 -0.8886 29 1 0.8541 -5.0445 0.8914 30 1 3.0704 -6.0365 0.7816 31 1 1.1108 -7.4691 0.8924 32 1 1.1089 -7.4697 -0.8876 33 1 2.7592 -8.4335 -2.1799 34 1 4.3077 -7.9449 -1.4227 35 1 4.7997 -10.0705 0.6809 36 1 5.1910 -11.6008 -0.2704 37 1 1.8714 -10.1432 1.1766 38 1 1.1221 -9.9088 -0.4326 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602541814.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:58 Heat of formation + Delta-G solvation = -2.970421 kcal Electronic energy + Delta-G solvation = -14711.889579 eV Core-core repulsion = 12360.647617 eV Total energy + Delta-G solvation = -2351.241962 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.77439 -36.37188 -33.74378 -32.16065 -30.31181 -28.31625 -26.68526 -24.59219 -22.43416 -21.95730 -20.17903 -19.76545 -19.27778 -16.36497 -16.06522 -15.64066 -15.18999 -14.49232 -13.96705 -13.75346 -13.61181 -13.09094 -12.87678 -12.29154 -12.00402 -11.68819 -11.52898 -11.39446 -10.97186 -10.91836 -10.85043 -10.62441 -10.53601 -10.43860 -10.16959 -9.66755 -9.64614 -9.29260 -9.02916 -8.31212 -8.10507 -5.96568 -3.98663 3.35980 3.39841 3.42782 3.50820 4.29053 4.33201 4.49203 4.60530 4.76122 4.87744 5.08393 5.29888 5.37798 5.39056 5.41375 5.49397 5.59137 5.70498 5.78836 5.83783 5.86975 5.89589 5.96970 6.03548 6.12364 6.23282 6.33819 6.36344 6.75884 6.81208 7.17628 7.39273 7.67619 7.72033 7.87490 8.04090 8.47442 9.08462 9.65114 11.14924 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.073563 B = 0.003677 C = 0.003577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 380.533008 B = 7613.172088 C = 7825.565862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.107 4.107 11 C 0.059 3.941 12 N -0.690 5.690 13 C 0.066 3.934 14 C -0.094 4.094 15 H 0.074 0.926 16 C -0.078 4.078 17 C -0.169 4.169 18 H 0.107 0.893 19 C -0.158 4.158 20 C -0.169 4.169 21 H 0.104 0.896 22 C -0.091 4.091 23 H 0.260 0.740 24 H 0.016 0.984 25 H 0.013 0.987 26 H 0.044 0.956 27 H 0.056 0.944 28 H 0.066 0.934 29 H 0.023 0.977 30 H 0.336 0.664 31 H 0.026 0.974 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.064 0.936 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.429 -20.648 -0.186 21.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.558 4.558 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.145 4.145 11 C -0.070 4.070 12 N -0.320 5.320 13 C -0.063 4.063 14 C -0.113 4.113 15 H 0.093 0.907 16 C -0.116 4.116 17 C -0.187 4.187 18 H 0.125 0.875 19 C -0.195 4.195 20 C -0.187 4.187 21 H 0.122 0.878 22 C -0.129 4.129 23 H 0.070 0.930 24 H 0.034 0.966 25 H 0.032 0.968 26 H 0.063 0.937 27 H 0.074 0.926 28 H 0.084 0.916 29 H 0.041 0.959 30 H 0.153 0.847 31 H 0.044 0.956 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.111 0.889 36 H 0.113 0.887 37 H 0.083 0.917 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.330 -20.509 -0.883 21.208 hybrid contribution 0.039 0.824 0.898 1.220 sum 5.369 -19.685 0.016 20.404 Atomic orbital electron populations 1.69960 1.06068 1.26651 1.51006 1.25035 0.94854 0.99259 0.95395 0.86649 0.79565 0.83106 0.78627 1.20210 1.21324 1.20267 1.21234 0.93035 0.91098 1.50397 0.92716 1.19062 0.94031 0.91391 0.97083 1.21618 0.99160 0.93022 1.00677 1.22121 0.94138 0.90892 0.99807 1.60559 1.20330 1.01406 1.49728 1.21930 0.95151 0.88931 1.00310 1.22135 0.97329 0.93569 0.98227 0.90722 1.21844 0.99809 0.93153 0.96774 1.23633 1.04661 0.95967 0.94438 0.87496 1.23263 0.95072 1.02436 0.98690 1.23124 0.91540 0.99431 1.04576 0.87755 1.21947 0.97483 0.92990 1.00514 0.92995 0.96601 0.96843 0.93717 0.92570 0.91575 0.95893 0.84710 0.95632 0.91125 0.90862 0.90920 0.88892 0.88721 0.91724 0.90838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.46 13.29 55.43 0.74 -26.73 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.52 -15.07 9.11 -34.44 -0.31 -15.39 16 8 H 0.05 1.54 7.74 -52.48 -0.41 1.13 16 9 C 0.02 0.58 4.97 -27.89 -0.14 0.44 16 10 C -0.11 -2.27 5.41 -26.74 -0.14 -2.41 16 11 C 0.06 1.05 5.69 -3.83 -0.02 1.03 16 12 N -0.69 -10.23 6.43 -113.78 -0.73 -10.96 16 13 C 0.07 0.82 5.12 -3.82 -0.02 0.80 16 14 C -0.09 -0.99 2.58 -88.63 -0.23 -1.22 16 15 H 0.07 0.80 7.42 -51.93 -0.39 0.41 16 16 C -0.08 -0.85 6.15 -25.07 -0.15 -1.00 16 17 C -0.17 -1.61 7.16 -88.19 -0.63 -2.24 16 18 H 0.11 0.94 8.14 -51.93 -0.42 0.51 16 19 C -0.16 -1.37 9.94 -25.42 -0.25 -1.62 16 20 C -0.17 -1.51 6.97 -89.50 -0.62 -2.14 16 21 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 22 C -0.09 -0.86 6.21 -25.07 -0.16 -1.01 16 23 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 24 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 27 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.34 4.69 8.73 -39.29 -0.34 4.35 16 31 H 0.03 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.90 7.99 -51.93 -0.41 0.49 16 33 H 0.07 0.83 7.94 -51.93 -0.41 0.41 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.09 0.83 7.27 -51.93 -0.38 0.45 16 36 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.67 8.05 -51.93 -0.42 0.25 16 LS Contribution 306.49 15.07 4.62 4.62 Total: -1.00 -29.95 306.49 -10.14 -40.09 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -6.97 Total: -0.78 kcal Atomic # 6 Polarization: -20.45 SS G_CDS: -2.78 Total: -23.23 kcal Atomic # 7 Polarization: -37.69 SS G_CDS: 0.01 Total: -37.68 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -29.95 -10.14 -40.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602541814.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.121 kcal (2) G-P(sol) polarization free energy of solvation -29.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds