Wall clock time and date at job start Mon Mar 30 2020 03:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99894 * 2 1 4 4 H 1.48503 * 109.46778 * 239.99544 * 3 2 1 5 5 H 1.48503 * 109.47134 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47402 * 119.99486 * 3 2 1 7 7 C 1.37876 * 119.99989 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99588 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00356 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47592 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47482 * 179.97438 * 10 9 7 12 12 N 1.46899 * 109.47254 * 179.97438 * 11 10 9 13 13 C 1.46904 * 111.00029 * 179.97438 * 12 11 10 14 14 C 1.52997 * 109.46950 * 180.02562 * 13 12 11 15 15 H 1.09005 * 110.67324 * 51.76989 * 14 13 12 16 16 C 1.54893 * 110.75974 * 288.33188 * 14 13 12 17 17 C 1.54259 * 104.19620 * 203.74660 * 16 14 13 18 18 H 1.09003 * 117.41276 * 163.59040 * 17 16 14 19 19 C 1.55469 * 118.30446 * 320.01769 * 17 16 14 20 20 C 1.53006 * 59.83754 * 93.29988 * 19 17 16 21 21 H 1.08994 * 119.29735 * 111.71485 * 20 19 17 22 22 C 1.54274 * 118.19625 * 265.85477 * 20 19 17 23 23 H 0.96996 * 119.99885 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47210 * 59.99420 * 9 7 2 25 25 H 1.09001 * 109.46665 * 299.99679 * 9 7 2 26 26 H 1.09002 * 109.47103 * 59.99616 * 10 9 7 27 27 H 1.08998 * 109.46862 * 300.00428 * 10 9 7 28 28 H 1.09002 * 109.47153 * 59.99783 * 11 10 9 29 29 H 1.09001 * 109.46832 * 299.99974 * 11 10 9 30 30 H 1.00908 * 110.99847 * 56.04959 * 12 11 10 31 31 H 1.08995 * 109.47167 * 300.00240 * 13 12 11 32 32 H 1.09003 * 109.46442 * 60.00214 * 13 12 11 33 33 H 1.09007 * 110.48269 * 322.42289 * 16 14 13 34 34 H 1.08992 * 110.48603 * 85.06175 * 16 14 13 35 35 H 1.09001 * 118.05530 * 346.16245 * 19 17 16 36 36 H 1.08998 * 117.18736 * 200.82176 * 19 17 16 37 37 H 1.09000 * 110.48418 * 283.10405 * 22 20 19 38 38 H 1.09002 * 110.59597 * 160.51535 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4804 -4.9871 0.0012 12 7 2.4350 -6.1036 0.0006 13 6 1.7347 -7.3950 0.0018 14 6 2.7597 -8.5309 0.0017 15 1 3.4866 -8.3934 0.8023 16 6 3.4647 -8.6341 -1.3736 17 6 3.9569 -10.0947 -1.4377 18 1 4.2417 -10.4859 -2.4144 19 6 4.5445 -10.7320 -0.1470 20 6 3.0614 -10.9028 -0.4823 21 1 2.6864 -11.8892 -0.7552 22 6 2.0562 -9.9049 0.1292 23 1 -0.4850 0.8400 -0.0004 24 1 0.6248 -2.5571 -0.8896 25 1 0.6242 -2.5567 0.8903 26 1 2.8720 -3.6043 0.8905 27 1 2.8720 -3.6042 -0.8894 28 1 0.8534 -5.0451 -0.8886 29 1 0.8541 -5.0445 0.8914 30 1 3.0704 -6.0365 0.7816 31 1 1.1108 -7.4691 0.8924 32 1 1.1089 -7.4697 -0.8876 33 1 2.7592 -8.4335 -2.1799 34 1 4.3077 -7.9449 -1.4227 35 1 4.7997 -10.0705 0.6809 36 1 5.1910 -11.6008 -0.2704 37 1 1.8714 -10.1432 1.1766 38 1 1.1221 -9.9088 -0.4326 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602541814.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:57 Heat of formation + Delta-G solvation = -19.918954 kcal Electronic energy + Delta-G solvation = -14712.624522 eV Core-core repulsion = 12360.647617 eV Total energy + Delta-G solvation = -2351.976906 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.55766 -37.71478 -35.58777 -33.75553 -31.76535 -29.10053 -28.35582 -25.97886 -23.95022 -23.01004 -21.90807 -20.50140 -20.15895 -18.47701 -17.08116 -16.72214 -16.53766 -16.24862 -15.27108 -15.23061 -14.46055 -14.30931 -14.06267 -13.87951 -13.40383 -13.21396 -12.92795 -12.68419 -12.48199 -12.29634 -12.20425 -11.85801 -11.82228 -11.64596 -11.42058 -11.35646 -11.03700 -10.86711 -10.55211 -10.39099 -9.33707 -8.20355 -6.31773 1.40012 1.43588 1.51519 2.41145 2.80411 3.12535 3.20619 3.59177 3.75655 3.91607 4.09759 4.21585 4.32186 4.35857 4.50094 4.56308 4.61619 4.72050 4.75777 4.78542 4.84460 4.99082 5.00386 5.07414 5.10509 5.11416 5.24014 5.27340 5.39175 5.40593 5.48622 5.51914 5.74514 5.85358 6.07211 6.26980 6.49903 6.85091 7.37529 8.91514 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.073563 B = 0.003677 C = 0.003577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 380.533008 B = 7613.172088 C = 7825.565862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.002 4.002 3 Si 0.967 3.033 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.546 4.546 8 H 0.060 0.940 9 C 0.025 3.975 10 C -0.092 4.092 11 C 0.072 3.928 12 N -0.690 5.690 13 C 0.068 3.932 14 C -0.088 4.088 15 H 0.076 0.924 16 C -0.079 4.079 17 C -0.179 4.179 18 H 0.114 0.886 19 C -0.154 4.154 20 C -0.167 4.167 21 H 0.117 0.883 22 C -0.090 4.090 23 H 0.264 0.736 24 H -0.009 1.009 25 H -0.009 1.009 26 H 0.050 0.950 27 H 0.052 0.948 28 H 0.059 0.941 29 H 0.022 0.978 30 H 0.343 0.657 31 H 0.030 0.970 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.059 0.941 35 H 0.090 0.910 36 H 0.110 0.890 37 H 0.072 0.928 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.623 -21.411 0.100 22.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.791 3.209 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.584 4.584 8 H 0.078 0.922 9 C -0.013 4.013 10 C -0.130 4.130 11 C -0.057 4.057 12 N -0.321 5.321 13 C -0.061 4.061 14 C -0.107 4.107 15 H 0.094 0.906 16 C -0.117 4.117 17 C -0.197 4.197 18 H 0.132 0.868 19 C -0.190 4.190 20 C -0.185 4.185 21 H 0.135 0.865 22 C -0.128 4.128 23 H 0.073 0.927 24 H 0.009 0.991 25 H 0.009 0.991 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.040 0.960 30 H 0.161 0.839 31 H 0.048 0.952 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.108 0.892 36 H 0.128 0.872 37 H 0.090 0.910 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 6.537 -21.294 -0.594 22.283 hybrid contribution -0.356 1.030 0.805 1.355 sum 6.181 -20.264 0.211 21.187 Atomic orbital electron populations 1.70095 1.07846 1.27884 1.51665 1.26018 0.95810 1.03479 0.94659 0.85473 0.78260 0.77909 0.79247 1.19155 1.20741 1.19064 1.21690 0.93580 0.92444 1.50639 0.92197 1.18970 0.94439 0.93159 0.94706 1.21371 0.98001 0.92939 1.00706 1.21820 0.94014 0.90373 0.99496 1.60478 1.19865 1.01510 1.50226 1.21968 0.95609 0.88190 1.00321 1.22065 0.96897 0.93572 0.98148 0.90567 1.21795 0.99215 0.94041 0.96618 1.23632 1.05729 0.95078 0.95291 0.86843 1.23355 0.95160 1.02682 0.97850 1.23197 0.91557 0.99702 1.03996 0.86525 1.21938 0.97570 0.92125 1.01136 0.92730 0.99105 0.99103 0.93087 0.92940 0.92212 0.96009 0.83930 0.95172 0.91501 0.91700 0.92181 0.89187 0.87216 0.90966 0.90654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.98 13.29 21.45 0.28 -57.70 16 2 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 3 Si 0.97 44.94 29.54 68.60 2.03 46.97 16 4 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 5 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 6 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 7 C -0.55 -31.94 9.11 25.60 0.23 -31.71 16 8 H 0.06 3.36 7.74 -2.91 -0.02 3.33 16 9 C 0.02 1.35 4.97 29.84 0.15 1.50 16 10 C -0.09 -3.93 5.41 30.59 0.17 -3.76 16 11 C 0.07 2.55 5.69 86.30 0.49 3.04 16 12 N -0.69 -19.85 6.43 -513.89 -3.30 -23.15 16 13 C 0.07 1.62 5.12 86.30 0.44 2.06 16 14 C -0.09 -1.74 2.58 -9.50 -0.02 -1.77 16 15 H 0.08 1.51 7.42 -2.38 -0.02 1.49 16 16 C -0.08 -1.64 6.15 31.67 0.19 -1.45 16 17 C -0.18 -3.12 7.16 -9.22 -0.07 -3.19 16 18 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 19 C -0.15 -2.34 9.94 31.45 0.31 -2.02 16 20 C -0.17 -2.62 6.97 -10.07 -0.07 -2.69 16 21 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 22 C -0.09 -1.51 6.21 31.67 0.20 -1.31 16 23 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 24 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 25 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 26 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 27 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 28 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 29 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.34 9.14 8.73 -89.69 -0.78 8.36 16 31 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.07 1.65 7.99 -2.39 -0.02 1.63 16 33 H 0.06 1.43 7.94 -2.38 -0.02 1.41 16 34 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.09 1.43 7.27 -2.39 -0.02 1.41 16 36 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.07 1.24 8.05 -2.39 -0.02 1.23 16 Total: -1.00 -63.56 306.49 1.71 -61.84 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: 0.22 Total: 12.98 kcal Atomic # 6 Polarization: -43.43 SS G_CDS: 2.49 Total: -40.95 kcal Atomic # 7 Polarization: -77.83 SS G_CDS: -3.02 Total: -80.84 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -63.56 1.71 -61.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602541814.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.925 kcal (2) G-P(sol) polarization free energy of solvation -63.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds