Wall clock time and date at job start Mon Mar 30 2020 02:42:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46900 * 109.47143 * 2 1 4 4 C 1.46900 * 110.99937 * 66.04808 * 3 2 1 5 5 C 1.46900 * 111.00250 * 190.00027 * 3 2 1 6 6 C 1.50698 * 109.47379 * 170.00379 * 5 3 2 7 7 N 1.30327 * 125.97337 * 270.28962 * 6 5 3 8 8 N 1.39873 * 109.22741 * 180.20030 * 7 6 5 9 9 C 1.46506 * 125.67581 * 179.80872 * 8 7 6 10 10 C 1.34500 * 108.64885 * 359.53970 * 8 7 6 11 11 C 1.39280 * 107.18853 * 0.27071 * 10 8 7 12 12 C 1.41591 * 126.55646 * 179.97438 * 11 10 8 13 13 H 1.07999 * 120.00218 * 180.02562 * 12 11 10 14 14 C 1.39694 * 120.00380 * 0.02562 * 12 11 10 15 15 N 1.31032 * 119.99705 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 120.00429 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.46637 * 60.00379 * 16 14 12 18 18 H 1.48503 * 109.46934 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.46865 * 300.00180 * 16 14 12 20 20 H 1.08994 * 109.47222 * 299.99892 * 1 2 3 21 21 H 1.09009 * 109.47505 * 59.99886 * 1 2 3 22 22 H 1.08998 * 109.47510 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.46934 * 240.00498 * 2 1 3 24 24 H 1.08994 * 109.47187 * 120.00333 * 2 1 3 25 25 H 1.08992 * 109.47473 * 183.95582 * 4 3 2 26 26 H 1.09000 * 109.47102 * 303.95408 * 4 3 2 27 27 H 1.08999 * 109.46840 * 63.95148 * 4 3 2 28 28 H 1.09000 * 109.46959 * 50.00215 * 5 3 2 29 29 H 1.09004 * 109.47154 * 290.00281 * 5 3 2 30 30 H 1.09001 * 109.47060 * 269.69483 * 9 8 7 31 31 H 1.09004 * 109.47073 * 29.68971 * 9 8 7 32 32 H 1.09000 * 109.47212 * 149.69054 * 9 8 7 33 33 H 1.08001 * 126.40705 * 180.22399 * 10 8 7 34 34 H 0.97003 * 120.00087 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6702 2.0669 1.2533 5 6 3.4684 1.4312 -0.2381 6 6 3.8934 2.8574 -0.4754 7 7 3.9381 3.4610 -1.6296 8 7 4.3855 4.7735 -1.4460 9 6 4.5730 5.7682 -2.5051 10 6 4.6093 4.9721 -0.1347 11 6 4.3092 3.7797 0.5193 12 6 4.4019 3.5345 1.9108 13 1 4.1414 2.5641 2.3067 14 6 4.8303 4.5479 2.7716 15 7 5.1458 5.7255 2.2914 16 14 4.9532 4.2243 4.6073 17 1 5.9121 3.1170 4.8515 18 1 5.4278 5.4516 5.2955 19 1 3.6169 3.8472 5.1340 20 1 -0.3633 0.5138 0.8899 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 1.8933 -0.5138 -0.8901 24 1 1.8933 -0.5139 0.8899 25 1 1.9823 3.1097 1.1989 26 1 0.5919 2.0178 1.4052 27 1 2.1769 1.5789 2.0859 28 1 3.7121 0.8291 -1.1135 29 1 3.9925 1.0359 0.6321 30 1 5.5920 5.7048 -2.8869 31 1 3.8691 5.5743 -3.3145 32 1 4.3974 6.7656 -2.1020 33 1 4.9574 5.8853 0.3250 34 1 5.4430 6.4293 2.8891 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000675056214.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:53 Heat of formation + Delta-G solvation = 74.417442 kcal Electronic energy + Delta-G solvation = -15604.834491 eV Core-core repulsion = 13153.407975 eV Total energy + Delta-G solvation = -2451.426516 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.32497 -36.95353 -33.46482 -32.24526 -30.21406 -28.63781 -27.27066 -26.10916 -24.44628 -22.92658 -20.50153 -19.60922 -18.01363 -16.73425 -15.37367 -15.25807 -14.87697 -14.24217 -13.97713 -13.72692 -13.10556 -12.70553 -12.36085 -11.97625 -11.72816 -11.52165 -11.41133 -11.35082 -11.24748 -11.06469 -10.81794 -10.50523 -10.41528 -10.38079 -9.65039 -9.14982 -8.78534 -7.79915 -7.55170 -6.97458 -6.35045 -3.92981 3.14598 3.21562 3.24701 3.45330 3.98489 4.20613 4.24014 4.80268 5.35674 5.57358 5.60875 5.64356 5.73587 5.87894 5.96283 6.07553 6.08318 6.13247 6.22940 6.29814 6.35214 6.42411 6.50939 6.95868 7.01230 7.33115 7.59172 7.72231 7.78644 7.90801 8.01393 8.47234 8.90914 9.16949 9.23198 9.52234 10.66138 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.018518 B = 0.011896 C = 0.007706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.707124 B = 2353.192896 C = 3632.825934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.049 3.951 3 N -0.536 5.536 4 C 0.026 3.974 5 C 0.156 3.844 6 C 0.019 3.981 7 N -0.323 5.323 8 N -0.395 5.395 9 C 0.122 3.878 10 C -0.053 4.053 11 C -0.039 4.039 12 C -0.420 4.420 13 H 0.066 0.934 14 C 0.056 3.944 15 N -0.847 5.847 16 Si 0.908 3.092 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.272 1.272 20 H 0.054 0.946 21 H 0.060 0.940 22 H 0.051 0.949 23 H 0.067 0.933 24 H 0.027 0.973 25 H 0.091 0.909 26 H 0.051 0.949 27 H 0.023 0.977 28 H 0.067 0.933 29 H 0.045 0.955 30 H 0.050 0.950 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.191 0.809 34 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.791 -4.208 -2.247 6.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.079 4.079 3 N -0.261 5.261 4 C -0.121 4.121 5 C 0.027 3.973 6 C -0.147 4.147 7 N -0.148 5.148 8 N -0.183 5.183 9 C -0.022 4.022 10 C -0.195 4.195 11 C -0.048 4.048 12 C -0.455 4.455 13 H 0.084 0.916 14 C -0.152 4.152 15 N -0.480 5.480 16 Si 0.735 3.265 17 H -0.198 1.198 18 H -0.209 1.209 19 H -0.197 1.197 20 H 0.073 0.927 21 H 0.079 0.921 22 H 0.070 0.930 23 H 0.086 0.914 24 H 0.045 0.955 25 H 0.110 0.890 26 H 0.070 0.930 27 H 0.041 0.959 28 H 0.085 0.915 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.207 0.793 34 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.103 -3.764 -3.824 6.755 hybrid contribution 0.695 -0.229 2.437 2.545 sum -3.409 -3.993 -1.387 5.430 Atomic orbital electron populations 1.21781 0.95506 1.00661 1.02426 1.22048 0.95703 0.90079 1.00055 1.62031 1.14207 1.14113 1.35728 1.22521 0.99049 1.01733 0.88838 1.20003 0.86410 0.91436 0.99438 1.21847 1.05343 0.95822 0.91706 1.76305 1.23041 0.91457 1.23977 1.47653 1.55383 1.08835 1.06465 1.21336 1.00700 0.90039 0.90085 1.23930 1.11627 1.02961 0.81006 1.17928 1.02981 0.90488 0.93449 1.18670 1.39162 0.97650 0.90039 0.91559 1.25498 0.94883 0.94736 1.00067 1.69438 1.39600 1.03182 1.35824 0.86361 0.78982 0.77986 0.83153 1.19789 1.20923 1.19689 0.92708 0.92107 0.92990 0.91406 0.95496 0.89041 0.93032 0.95852 0.91492 0.93653 0.93122 0.91430 0.91098 0.79277 0.91972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.84 37.15 0.37 -1.57 16 2 C 0.05 0.76 5.68 -3.83 -0.02 0.74 16 3 N -0.54 -10.37 4.75 -244.38 -1.16 -11.53 16 4 C 0.03 0.52 8.25 60.06 0.50 1.02 16 5 C 0.16 3.28 5.32 -4.98 -0.03 3.26 16 6 C 0.02 0.48 6.11 -81.84 -0.50 -0.02 16 7 N -0.32 -8.15 12.47 34.00 0.42 -7.72 16 8 N -0.40 -9.50 3.98 -67.18 -0.27 -9.77 16 9 C 0.12 2.17 11.44 59.85 0.68 2.85 16 10 C -0.05 -1.41 10.46 -16.00 -0.17 -1.58 16 11 C -0.04 -1.04 5.05 -106.84 -0.54 -1.58 16 12 C -0.42 -11.22 7.77 -37.76 -0.29 -11.51 16 13 H 0.07 1.71 6.43 -52.49 -0.34 1.37 16 14 C 0.06 1.46 5.49 -17.35 -0.10 1.36 16 15 N -0.85 -22.46 10.33 55.54 0.57 -21.89 16 16 Si 0.91 19.87 29.56 -169.99 -5.02 14.85 16 17 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 18 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 19 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 20 H 0.05 0.73 6.47 -51.93 -0.34 0.39 16 21 H 0.06 0.84 8.14 -51.92 -0.42 0.41 16 22 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 23 H 0.07 0.97 7.93 -51.93 -0.41 0.56 16 24 H 0.03 0.40 8.12 -51.93 -0.42 -0.02 16 25 H 0.09 2.14 5.74 -51.93 -0.30 1.84 16 26 H 0.05 0.89 6.30 -51.93 -0.33 0.56 16 27 H 0.02 0.45 7.57 -51.93 -0.39 0.06 16 28 H 0.07 1.31 7.93 -51.93 -0.41 0.90 16 29 H 0.05 0.95 7.59 -51.93 -0.39 0.56 16 30 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.19 5.12 5.75 -52.49 -0.30 4.81 16 34 H 0.27 6.68 8.30 -40.82 -0.34 6.34 16 LS Contribution 276.69 15.07 4.17 4.17 Total: -1.00 -29.69 276.69 -6.27 -35.96 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -4.88 Total: 2.97 kcal Atomic # 6 Polarization: -6.93 SS G_CDS: -0.10 Total: -7.03 kcal Atomic # 7 Polarization: -50.48 SS G_CDS: -0.43 Total: -50.91 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.02 Total: 14.85 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -29.69 -6.27 -35.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000675056214.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.374 kcal (2) G-P(sol) polarization free energy of solvation -29.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds