Wall clock time and date at job start Mon Mar 30 2020 02:42:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46900 * 109.47143 * 2 1 4 4 C 1.46900 * 110.99937 * 66.04808 * 3 2 1 5 5 C 1.46900 * 111.00250 * 190.00027 * 3 2 1 6 6 C 1.50698 * 109.47379 * 170.00379 * 5 3 2 7 7 N 1.30327 * 125.97337 * 270.28962 * 6 5 3 8 8 N 1.39873 * 109.22741 * 180.20030 * 7 6 5 9 9 C 1.46506 * 125.67581 * 179.80872 * 8 7 6 10 10 C 1.34500 * 108.64885 * 359.53970 * 8 7 6 11 11 C 1.39280 * 107.18853 * 0.27071 * 10 8 7 12 12 C 1.41591 * 126.55646 * 179.97438 * 11 10 8 13 13 H 1.07999 * 120.00218 * 180.02562 * 12 11 10 14 14 C 1.39694 * 120.00380 * 0.02562 * 12 11 10 15 15 N 1.31032 * 119.99705 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 120.00429 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.46637 * 60.00379 * 16 14 12 18 18 H 1.48503 * 109.46934 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.46865 * 300.00180 * 16 14 12 20 20 H 1.08994 * 109.47222 * 299.99892 * 1 2 3 21 21 H 1.09009 * 109.47505 * 59.99886 * 1 2 3 22 22 H 1.08998 * 109.47510 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.46934 * 240.00498 * 2 1 3 24 24 H 1.08994 * 109.47187 * 120.00333 * 2 1 3 25 25 H 1.08992 * 109.47473 * 183.95582 * 4 3 2 26 26 H 1.09000 * 109.47102 * 303.95408 * 4 3 2 27 27 H 1.08999 * 109.46840 * 63.95148 * 4 3 2 28 28 H 1.09000 * 109.46959 * 50.00215 * 5 3 2 29 29 H 1.09004 * 109.47154 * 290.00281 * 5 3 2 30 30 H 1.09001 * 109.47060 * 269.69483 * 9 8 7 31 31 H 1.09004 * 109.47073 * 29.68971 * 9 8 7 32 32 H 1.09000 * 109.47212 * 149.69054 * 9 8 7 33 33 H 1.08001 * 126.40705 * 180.22399 * 10 8 7 34 34 H 0.97003 * 120.00087 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6702 2.0669 1.2533 5 6 3.4684 1.4312 -0.2381 6 6 3.8934 2.8574 -0.4754 7 7 3.9381 3.4610 -1.6296 8 7 4.3855 4.7735 -1.4460 9 6 4.5730 5.7682 -2.5051 10 6 4.6093 4.9721 -0.1347 11 6 4.3092 3.7797 0.5193 12 6 4.4019 3.5345 1.9108 13 1 4.1414 2.5641 2.3067 14 6 4.8303 4.5479 2.7716 15 7 5.1458 5.7255 2.2914 16 14 4.9532 4.2243 4.6073 17 1 5.9121 3.1170 4.8515 18 1 5.4278 5.4516 5.2955 19 1 3.6169 3.8472 5.1340 20 1 -0.3633 0.5138 0.8899 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 1.8933 -0.5138 -0.8901 24 1 1.8933 -0.5139 0.8899 25 1 1.9823 3.1097 1.1989 26 1 0.5919 2.0178 1.4052 27 1 2.1769 1.5789 2.0859 28 1 3.7121 0.8291 -1.1135 29 1 3.9925 1.0359 0.6321 30 1 5.5920 5.7048 -2.8869 31 1 3.8691 5.5743 -3.3145 32 1 4.3974 6.7656 -2.1020 33 1 4.9574 5.8853 0.3250 34 1 5.4430 6.4293 2.8891 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000675056214.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:52 Heat of formation + Delta-G solvation = 54.678349 kcal Electronic energy + Delta-G solvation = -15605.690443 eV Core-core repulsion = 13153.407975 eV Total energy + Delta-G solvation = -2452.282467 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.20053 -38.44071 -35.39199 -33.93407 -31.54758 -30.60100 -28.87230 -27.83901 -26.14023 -24.52578 -21.87531 -21.53782 -19.86022 -18.67651 -17.23185 -16.75380 -16.27872 -16.02637 -15.59823 -15.28838 -14.53534 -14.43742 -13.98966 -13.54128 -13.27725 -13.17249 -13.07764 -12.85968 -12.73154 -12.70051 -12.31034 -12.15904 -12.12004 -11.69032 -11.57663 -11.07029 -10.72266 -9.58679 -9.14747 -8.94855 -8.30059 -5.94530 1.40699 1.44077 1.53501 1.56545 2.25922 2.31400 2.41956 3.24624 3.67469 4.03040 4.21123 4.33255 4.36784 4.49460 4.57524 4.66788 4.70474 4.72081 4.76914 4.80778 5.03265 5.07521 5.13495 5.28662 5.38053 5.45686 5.66821 5.92922 6.03930 6.17800 6.36509 6.53325 6.98385 7.19458 7.23163 7.57601 8.71790 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.018518 B = 0.011896 C = 0.007706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.707124 B = 2353.192896 C = 3632.825934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.047 3.953 3 N -0.546 5.546 4 C 0.038 3.962 5 C 0.161 3.839 6 C 0.011 3.989 7 N -0.335 5.335 8 N -0.399 5.399 9 C 0.112 3.888 10 C -0.072 4.072 11 C -0.068 4.068 12 C -0.440 4.440 13 H 0.066 0.934 14 C 0.012 3.988 15 N -0.871 5.871 16 Si 0.975 3.025 17 H -0.269 1.269 18 H -0.278 1.278 19 H -0.266 1.266 20 H 0.051 0.949 21 H 0.053 0.947 22 H 0.080 0.920 23 H 0.079 0.921 24 H 0.035 0.965 25 H 0.050 0.950 26 H 0.074 0.926 27 H 0.020 0.980 28 H 0.081 0.919 29 H 0.041 0.959 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.182 0.818 34 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.432 -5.194 -2.017 7.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.081 4.081 3 N -0.272 5.272 4 C -0.110 4.110 5 C 0.032 3.968 6 C -0.156 4.156 7 N -0.160 5.160 8 N -0.187 5.187 9 C -0.029 4.029 10 C -0.215 4.215 11 C -0.078 4.078 12 C -0.474 4.474 13 H 0.084 0.916 14 C -0.194 4.194 15 N -0.505 5.505 16 Si 0.799 3.201 17 H -0.194 1.194 18 H -0.202 1.202 19 H -0.191 1.191 20 H 0.070 0.930 21 H 0.072 0.928 22 H 0.099 0.901 23 H 0.098 0.902 24 H 0.053 0.947 25 H 0.069 0.931 26 H 0.093 0.907 27 H 0.039 0.961 28 H 0.099 0.901 29 H 0.059 0.941 30 H 0.088 0.912 31 H 0.103 0.897 32 H 0.107 0.893 33 H 0.198 0.802 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.750 -4.745 -3.628 7.632 hybrid contribution 0.883 0.101 2.274 2.441 sum -3.867 -4.644 -1.354 6.194 Atomic orbital electron populations 1.21749 0.93688 1.02418 1.01927 1.22200 0.97128 0.87709 1.01026 1.62002 1.12940 1.16797 1.35434 1.22324 1.00314 0.99310 0.89100 1.19989 0.87642 0.89403 0.99807 1.22344 1.04909 0.97284 0.91025 1.76220 1.23328 0.92230 1.24260 1.48047 1.54580 1.09230 1.06878 1.21727 1.02407 0.89542 0.89273 1.23863 1.12454 1.02740 0.82418 1.18330 1.03713 0.91442 0.94305 1.18852 1.40046 0.98051 0.90497 0.91581 1.26319 0.94269 0.94392 1.04391 1.69526 1.39830 1.03833 1.37294 0.85328 0.79102 0.77996 0.77671 1.19352 1.20247 1.19070 0.92964 0.92797 0.90137 0.90207 0.94678 0.93139 0.90701 0.96102 0.90069 0.94138 0.91208 0.89668 0.89321 0.80188 0.91582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.32 9.84 71.98 0.71 -2.62 16 2 C 0.05 1.33 5.68 86.30 0.49 1.82 16 3 N -0.55 -20.61 4.75 -927.07 -4.41 -25.02 16 4 C 0.04 1.47 8.25 127.69 1.05 2.52 16 5 C 0.16 6.71 5.32 85.56 0.46 7.17 16 6 C 0.01 0.54 6.11 43.68 0.27 0.81 16 7 N -0.33 -16.90 12.47 -46.36 -0.58 -17.48 16 8 N -0.40 -19.19 3.98 -366.46 -1.46 -20.65 16 9 C 0.11 3.85 11.44 127.77 1.46 5.31 16 10 C -0.07 -3.89 10.46 84.53 0.88 -3.00 16 11 C -0.07 -3.75 5.05 -21.30 -0.11 -3.85 16 12 C -0.44 -23.90 7.77 23.45 0.18 -23.72 16 13 H 0.07 3.46 6.43 -2.91 -0.02 3.45 16 14 C 0.01 0.62 5.49 85.16 0.47 1.08 16 15 N -0.87 -46.85 10.33 21.79 0.23 -46.62 16 16 Si 0.98 40.71 29.56 68.60 2.03 42.73 16 17 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 18 H -0.28 -11.19 7.11 99.48 0.71 -10.49 16 19 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 20 H 0.05 1.26 6.47 -2.39 -0.02 1.24 16 21 H 0.05 1.35 8.14 -2.38 -0.02 1.33 16 22 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 23 H 0.08 2.08 7.93 -2.38 -0.02 2.06 16 24 H 0.03 0.95 8.12 -2.39 -0.02 0.93 16 25 H 0.05 2.40 5.74 -2.39 -0.01 2.38 16 26 H 0.07 2.51 6.30 -2.39 -0.02 2.49 16 27 H 0.02 0.80 7.57 -2.39 -0.02 0.78 16 28 H 0.08 3.09 7.93 -2.39 -0.02 3.07 16 29 H 0.04 1.70 7.59 -2.39 -0.02 1.69 16 30 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.08 2.61 8.14 -2.38 -0.02 2.59 16 32 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 33 H 0.18 10.02 5.75 -2.91 -0.02 10.00 16 34 H 0.27 13.66 8.30 -92.71 -0.77 12.89 16 Total: -1.00 -63.89 276.69 2.75 -61.14 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: 1.08 Total: 20.37 kcal Atomic # 6 Polarization: -20.34 SS G_CDS: 5.86 Total: -14.47 kcal Atomic # 7 Polarization: -103.55 SS G_CDS: -6.22 Total: -109.77 kcal Atomic # 14 Polarization: 40.71 SS G_CDS: 2.03 Total: 42.73 kcal Total: -63.89 2.75 -61.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000675056214.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.815 kcal (2) G-P(sol) polarization free energy of solvation -63.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds