Wall clock time and date at job start Mon Mar 30 2020 03:13:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86798 * 120.00437 * 2 1 4 4 H 1.48502 * 109.46882 * 270.00079 * 3 2 1 5 5 H 1.48502 * 109.46850 * 29.99460 * 3 2 1 6 6 H 1.48492 * 109.47397 * 150.00179 * 3 2 1 7 7 C 1.37882 * 119.99927 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99848 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00236 * 179.97438 * 7 2 1 10 10 C 1.53002 * 109.47207 * 179.97438 * 9 7 2 11 11 N 1.46899 * 109.47086 * 180.02562 * 10 9 7 12 12 C 1.48125 * 110.99943 * 91.52561 * 11 10 9 13 13 C 1.52704 * 87.15710 * 141.43457 * 12 11 10 14 14 H 1.08996 * 113.98850 * 84.32449 * 13 12 11 15 15 C 1.51964 * 116.34441 * 219.66569 * 13 12 11 16 16 C 1.53680 * 108.89668 * 151.80690 * 15 13 12 17 17 C 1.52893 * 109.37323 * 300.03901 * 16 15 13 18 18 C 1.53285 * 110.70521 * 100.62465 * 17 16 15 19 19 C 1.52949 * 109.41707 * 277.34803 * 18 17 16 20 20 C 1.46510 * 111.00082 * 186.29438 * 11 10 9 21 21 H 1.09006 * 113.03839 * 332.29900 * 20 11 10 22 22 H 0.96997 * 120.00202 * 359.97438 * 1 2 3 23 23 H 1.09003 * 109.46691 * 59.99943 * 9 7 2 24 24 H 1.08993 * 109.47016 * 300.00182 * 9 7 2 25 25 H 1.08994 * 109.46615 * 59.99948 * 10 9 7 26 26 H 1.09002 * 109.47122 * 300.00065 * 10 9 7 27 27 H 1.09002 * 113.61872 * 256.02237 * 12 11 10 28 28 H 1.09002 * 113.61663 * 26.84619 * 12 11 10 29 29 H 1.09001 * 109.55480 * 31.97822 * 15 13 12 30 30 H 1.08997 * 109.64977 * 271.69076 * 15 13 12 31 31 H 1.09003 * 109.48121 * 180.02562 * 16 15 13 32 32 H 1.09000 * 109.50304 * 60.02155 * 16 15 13 33 33 H 1.08995 * 109.23382 * 340.30456 * 17 16 15 34 34 H 1.09007 * 109.22898 * 220.93301 * 17 16 15 35 35 H 1.08999 * 109.48062 * 157.36382 * 18 17 16 36 36 H 1.09000 * 109.49116 * 37.34092 * 18 17 16 37 37 H 1.08998 * 109.57431 * 240.34780 * 19 18 17 38 38 H 1.09004 * 109.67079 * 120.03225 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.6999 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0014 9 6 3.5115 -1.1942 0.0000 10 6 4.0214 -2.6367 0.0014 11 7 5.4904 -2.6368 0.0014 12 6 6.0212 -2.6723 1.3839 13 6 7.1073 -3.6100 0.8616 14 1 7.9605 -3.0965 0.4183 15 6 7.4942 -4.7657 1.7694 16 6 7.9959 -5.9322 0.9038 17 6 6.8842 -6.3710 -0.0496 18 6 7.1147 -5.7966 -1.4520 19 6 6.5861 -4.3624 -1.5073 20 6 6.0154 -3.9965 -0.1472 21 1 5.3391 -4.7594 0.2384 22 1 -0.4850 0.8400 0.0004 23 1 3.8751 -0.6797 0.8895 24 1 3.8744 -0.6810 -0.8904 25 1 3.6577 -3.1514 -0.8879 26 1 3.6584 -3.1496 0.8921 27 1 6.4029 -1.7117 1.7299 28 1 5.3457 -3.1418 2.0990 29 1 6.6248 -5.0849 2.3442 30 1 8.2851 -4.4488 2.4492 31 1 8.2758 -6.7673 1.5460 32 1 8.8634 -5.6108 0.3274 33 1 5.9254 -6.0177 0.3299 34 1 6.8682 -7.4595 -0.1058 35 1 6.5881 -6.4067 -2.1858 36 1 8.1816 -5.7997 -1.6754 37 1 5.8039 -4.2904 -2.2629 38 1 7.3994 -3.6810 -1.7574 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000685971952.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:15 Heat of formation + Delta-G solvation = 25.525607 kcal Electronic energy + Delta-G solvation = -15812.649299 eV Core-core repulsion = 13462.643017 eV Total energy + Delta-G solvation = -2350.006282 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.95171 -36.22941 -33.39073 -32.52630 -31.14714 -28.24574 -26.45756 -24.80385 -23.13024 -21.96953 -20.58446 -19.74345 -18.73440 -16.81400 -15.76110 -15.25507 -14.68034 -14.54073 -14.21407 -13.98358 -13.25800 -12.84026 -12.81761 -12.55519 -12.49782 -12.14091 -11.52815 -11.43152 -11.12966 -10.84584 -10.68155 -10.57089 -10.39293 -10.35583 -9.98888 -9.76359 -9.61739 -9.45979 -9.16349 -8.50591 -8.32338 -6.01959 -3.99888 3.35282 3.41718 3.48391 4.29525 4.49324 4.50064 4.60102 4.94892 5.02453 5.12101 5.25099 5.30877 5.33137 5.41716 5.46101 5.61394 5.69167 5.73562 5.82399 5.92864 5.97473 6.02184 6.11149 6.13273 6.19854 6.23177 6.24862 6.30058 6.44750 6.55152 6.76155 6.92173 7.23788 7.49589 7.66654 7.86873 8.55705 9.01897 9.61057 11.11495 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.048441 B = 0.006004 C = 0.005799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.880382 B = 4662.668956 C = 4827.314473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.067 3.933 3 Si 0.882 3.118 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.265 1.265 7 C -0.522 4.522 8 H 0.070 0.930 9 C -0.002 4.002 10 C 0.036 3.964 11 N -0.469 5.469 12 C 0.004 3.996 13 C -0.113 4.113 14 H 0.097 0.903 15 C -0.110 4.110 16 C -0.113 4.113 17 C -0.138 4.138 18 C -0.114 4.114 19 C -0.102 4.102 20 C 0.022 3.978 21 H 0.081 0.919 22 H 0.263 0.737 23 H 0.014 0.986 24 H 0.018 0.982 25 H 0.063 0.937 26 H 0.035 0.965 27 H 0.078 0.922 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.080 0.920 34 H 0.053 0.947 35 H 0.058 0.942 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.723 -11.126 1.404 20.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.134 4.134 3 Si 0.709 3.291 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.189 1.189 7 C -0.560 4.560 8 H 0.088 0.912 9 C -0.040 4.040 10 C -0.092 4.092 11 N -0.191 5.191 12 C -0.125 4.125 13 C -0.132 4.132 14 H 0.116 0.884 15 C -0.148 4.148 16 C -0.151 4.151 17 C -0.175 4.175 18 C -0.152 4.152 19 C -0.141 4.141 20 C -0.087 4.087 21 H 0.099 0.901 22 H 0.072 0.928 23 H 0.032 0.968 24 H 0.037 0.963 25 H 0.082 0.918 26 H 0.054 0.946 27 H 0.097 0.903 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.098 0.902 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 16.696 -10.452 0.916 19.719 hybrid contribution -0.167 0.334 0.496 0.620 sum 16.529 -10.118 1.412 19.431 Atomic orbital electron populations 1.69914 1.06320 1.26888 1.51307 1.24994 0.94706 0.99191 0.94475 0.86743 0.80349 0.83418 0.78598 1.20247 1.21491 1.18935 1.21121 0.89549 0.94446 1.50897 0.91232 1.19428 0.96201 0.91613 0.96718 1.22640 0.85820 1.00698 0.99994 1.69032 1.11621 1.21393 1.17059 1.23791 0.96352 0.99866 0.92481 1.22613 0.97072 0.96274 0.97249 0.88430 1.21473 1.00957 0.94992 0.97371 1.21678 0.98229 0.97422 0.97746 1.21994 1.00409 0.99669 0.95472 1.21646 1.00762 0.96125 0.96654 1.21181 1.00480 0.95813 0.96581 1.23407 0.96683 0.92619 0.96013 0.90149 0.92762 0.96772 0.96341 0.91827 0.94649 0.90313 0.91482 0.91977 0.91967 0.92428 0.91920 0.90191 0.92806 0.92281 0.92136 0.91946 0.91510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.49 13.96 55.43 0.77 -27.72 16 2 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 3 Si 0.88 22.52 27.47 -169.99 -4.67 17.86 16 4 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.26 -6.59 6.54 56.52 0.37 -6.22 16 7 C -0.52 -15.35 9.66 -34.44 -0.33 -15.68 16 8 H 0.07 2.18 7.99 -52.48 -0.42 1.76 16 9 C 0.00 -0.05 4.36 -27.88 -0.12 -0.17 16 10 C 0.04 0.77 4.71 -3.82 -0.02 0.75 16 11 N -0.47 -8.43 6.24 -249.44 -1.56 -9.98 16 12 C 0.00 0.06 7.27 -11.12 -0.08 -0.02 16 13 C -0.11 -1.43 3.61 -91.00 -0.33 -1.76 16 14 H 0.10 1.23 8.01 -51.93 -0.42 0.81 16 15 C -0.11 -1.13 5.55 -26.90 -0.15 -1.28 16 16 C -0.11 -1.05 5.83 -26.43 -0.15 -1.21 16 17 C -0.14 -1.38 5.44 -26.64 -0.14 -1.53 16 18 C -0.11 -1.17 6.10 -26.61 -0.16 -1.34 16 19 C -0.10 -1.32 6.07 -27.28 -0.17 -1.48 16 20 C 0.02 0.31 1.86 -75.96 -0.14 0.17 16 21 H 0.08 1.16 5.31 -51.93 -0.28 0.88 16 22 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 23 H 0.01 0.36 7.20 -51.93 -0.37 -0.02 16 24 H 0.02 0.47 7.57 -51.93 -0.39 0.08 16 25 H 0.06 1.36 8.12 -51.93 -0.42 0.93 16 26 H 0.04 0.74 7.38 -51.93 -0.38 0.35 16 27 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.07 1.02 7.39 -51.93 -0.38 0.64 16 29 H 0.06 0.66 7.98 -51.93 -0.41 0.24 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.57 7.42 -51.93 -0.39 0.18 16 33 H 0.08 0.90 4.57 -51.93 -0.24 0.66 16 34 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.57 7.60 -51.93 -0.39 0.17 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.07 0.86 7.97 -51.93 -0.41 0.45 16 LS Contribution 286.03 15.07 4.31 4.31 Total: -1.00 -30.90 286.03 -9.65 -40.56 By element: Atomic # 1 Polarization: 3.21 SS G_CDS: -6.62 Total: -3.41 kcal Atomic # 6 Polarization: -19.72 SS G_CDS: -1.90 Total: -21.62 kcal Atomic # 7 Polarization: -36.92 SS G_CDS: -0.78 Total: -37.70 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -4.67 Total: 17.86 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -30.90 -9.65 -40.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685971952.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.084 kcal (2) G-P(sol) polarization free energy of solvation -30.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds