Wall clock time and date at job start Mon Mar 30 2020 03:13:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86798 * 120.00437 * 2 1 4 4 H 1.48502 * 109.46882 * 270.00079 * 3 2 1 5 5 H 1.48502 * 109.46850 * 29.99460 * 3 2 1 6 6 H 1.48492 * 109.47397 * 150.00179 * 3 2 1 7 7 C 1.37882 * 119.99927 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99848 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00236 * 179.97438 * 7 2 1 10 10 C 1.53002 * 109.47207 * 179.97438 * 9 7 2 11 11 N 1.46899 * 109.47086 * 180.02562 * 10 9 7 12 12 C 1.48125 * 110.99943 * 91.52561 * 11 10 9 13 13 C 1.52704 * 87.15710 * 141.43457 * 12 11 10 14 14 H 1.08996 * 113.98850 * 84.32449 * 13 12 11 15 15 C 1.51964 * 116.34441 * 219.66569 * 13 12 11 16 16 C 1.53680 * 108.89668 * 151.80690 * 15 13 12 17 17 C 1.52893 * 109.37323 * 300.03901 * 16 15 13 18 18 C 1.53285 * 110.70521 * 100.62465 * 17 16 15 19 19 C 1.52949 * 109.41707 * 277.34803 * 18 17 16 20 20 C 1.46510 * 111.00082 * 186.29438 * 11 10 9 21 21 H 1.09006 * 113.03839 * 332.29900 * 20 11 10 22 22 H 0.96997 * 120.00202 * 359.97438 * 1 2 3 23 23 H 1.09003 * 109.46691 * 59.99943 * 9 7 2 24 24 H 1.08993 * 109.47016 * 300.00182 * 9 7 2 25 25 H 1.08994 * 109.46615 * 59.99948 * 10 9 7 26 26 H 1.09002 * 109.47122 * 300.00065 * 10 9 7 27 27 H 1.09002 * 113.61872 * 256.02237 * 12 11 10 28 28 H 1.09002 * 113.61663 * 26.84619 * 12 11 10 29 29 H 1.09001 * 109.55480 * 31.97822 * 15 13 12 30 30 H 1.08997 * 109.64977 * 271.69076 * 15 13 12 31 31 H 1.09003 * 109.48121 * 180.02562 * 16 15 13 32 32 H 1.09000 * 109.50304 * 60.02155 * 16 15 13 33 33 H 1.08995 * 109.23382 * 340.30456 * 17 16 15 34 34 H 1.09007 * 109.22898 * 220.93301 * 17 16 15 35 35 H 1.08999 * 109.48062 * 157.36382 * 18 17 16 36 36 H 1.09000 * 109.49116 * 37.34092 * 18 17 16 37 37 H 1.08998 * 109.57431 * 240.34780 * 19 18 17 38 38 H 1.09004 * 109.67079 * 120.03225 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.6999 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0014 9 6 3.5115 -1.1942 0.0000 10 6 4.0214 -2.6367 0.0014 11 7 5.4904 -2.6368 0.0014 12 6 6.0212 -2.6723 1.3839 13 6 7.1073 -3.6100 0.8616 14 1 7.9605 -3.0965 0.4183 15 6 7.4942 -4.7657 1.7694 16 6 7.9959 -5.9322 0.9038 17 6 6.8842 -6.3710 -0.0496 18 6 7.1147 -5.7966 -1.4520 19 6 6.5861 -4.3624 -1.5073 20 6 6.0154 -3.9965 -0.1472 21 1 5.3391 -4.7594 0.2384 22 1 -0.4850 0.8400 0.0004 23 1 3.8751 -0.6797 0.8895 24 1 3.8744 -0.6810 -0.8904 25 1 3.6577 -3.1514 -0.8879 26 1 3.6584 -3.1496 0.8921 27 1 6.4029 -1.7117 1.7299 28 1 5.3457 -3.1418 2.0990 29 1 6.6248 -5.0849 2.3442 30 1 8.2851 -4.4488 2.4492 31 1 8.2758 -6.7673 1.5460 32 1 8.8634 -5.6108 0.3274 33 1 5.9254 -6.0177 0.3299 34 1 6.8682 -7.4595 -0.1058 35 1 6.5881 -6.4067 -2.1858 36 1 8.1816 -5.7997 -1.6754 37 1 5.8039 -4.2904 -2.2629 38 1 7.3994 -3.6810 -1.7574 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000685971952.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:15 Heat of formation + Delta-G solvation = 5.163410 kcal Electronic energy + Delta-G solvation = -15813.532270 eV Core-core repulsion = 13462.643017 eV Total energy + Delta-G solvation = -2350.889253 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.10932 -37.31829 -35.39414 -33.66301 -32.88512 -29.69154 -27.67987 -26.20328 -24.39657 -23.26028 -21.95334 -21.09099 -19.79257 -18.96253 -16.96660 -16.40359 -16.29246 -15.80191 -15.63571 -15.37783 -14.74490 -14.34122 -13.92838 -13.79898 -13.67626 -13.44841 -13.17616 -12.95451 -12.50429 -12.21832 -11.99346 -11.86966 -11.60094 -11.58233 -11.41718 -11.21884 -11.18833 -10.99224 -10.81012 -10.68803 -9.69116 -8.34006 -6.38583 1.33357 1.34324 1.47985 2.33254 3.01350 3.08402 3.41636 3.66129 4.07697 4.12753 4.17124 4.18935 4.30231 4.38011 4.43150 4.45238 4.53774 4.62726 4.73471 4.82980 4.90343 4.95619 4.97035 5.07187 5.18535 5.24926 5.29092 5.31792 5.34559 5.37779 5.43839 5.54178 5.59177 5.61964 5.68370 6.19391 6.25773 6.68192 7.26641 8.82770 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.048441 B = 0.006004 C = 0.005799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.880382 B = 4662.668956 C = 4827.314473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.009 3.991 3 Si 0.953 3.047 4 H -0.267 1.267 5 H -0.279 1.279 6 H -0.252 1.252 7 C -0.536 4.536 8 H 0.032 0.968 9 C 0.006 3.994 10 C 0.050 3.950 11 N -0.489 5.489 12 C -0.004 4.004 13 C -0.091 4.091 14 H 0.104 0.896 15 C -0.107 4.107 16 C -0.109 4.109 17 C -0.139 4.139 18 C -0.108 4.108 19 C -0.101 4.101 20 C 0.019 3.981 21 H 0.080 0.920 22 H 0.268 0.732 23 H 0.014 0.986 24 H 0.015 0.985 25 H 0.052 0.948 26 H 0.030 0.970 27 H 0.078 0.922 28 H 0.066 0.934 29 H 0.057 0.943 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.076 0.924 37 H 0.044 0.956 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.455 -11.275 1.754 22.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.189 4.189 3 Si 0.776 3.224 4 H -0.192 1.192 5 H -0.204 1.204 6 H -0.176 1.176 7 C -0.575 4.575 8 H 0.050 0.950 9 C -0.032 4.032 10 C -0.078 4.078 11 N -0.211 5.211 12 C -0.133 4.133 13 C -0.110 4.110 14 H 0.122 0.878 15 C -0.145 4.145 16 C -0.147 4.147 17 C -0.176 4.176 18 C -0.146 4.146 19 C -0.140 4.140 20 C -0.089 4.089 21 H 0.097 0.903 22 H 0.077 0.923 23 H 0.032 0.968 24 H 0.033 0.967 25 H 0.070 0.930 26 H 0.049 0.951 27 H 0.097 0.903 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.097 0.903 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.095 0.905 37 H 0.063 0.937 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 19.442 -10.621 1.267 22.190 hybrid contribution -1.074 0.306 0.380 1.180 sum 18.368 -10.315 1.647 21.130 Atomic orbital electron populations 1.70052 1.08189 1.28298 1.52386 1.25961 0.95612 1.03417 0.93862 0.85622 0.79286 0.78252 0.79257 1.19177 1.20432 1.17609 1.21427 0.91869 0.93257 1.50903 0.94987 1.19289 0.93344 0.94294 0.96239 1.22325 0.88469 0.97783 0.99255 1.69008 1.08746 1.24276 1.19054 1.23904 0.97324 1.00788 0.91243 1.22511 0.95974 0.96112 0.96371 0.87827 1.21469 1.01398 0.94342 0.97250 1.21666 0.97955 0.97398 0.97650 1.21989 0.99913 1.00460 0.95272 1.21621 1.01617 0.94205 0.97183 1.21199 0.99915 0.97726 0.95117 1.23529 0.97132 0.90646 0.97627 0.90296 0.92314 0.96772 0.96694 0.92955 0.95138 0.90329 0.91621 0.92382 0.90313 0.90843 0.91128 0.91832 0.91544 0.91923 0.90525 0.93700 0.91422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.96 13.96 21.45 0.30 -60.66 16 2 C 0.01 0.52 5.47 84.66 0.46 0.99 16 3 Si 0.95 46.37 27.47 68.60 1.88 48.25 16 4 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 5 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 6 H -0.25 -11.68 6.54 99.48 0.65 -11.03 16 7 C -0.54 -32.46 9.66 25.60 0.25 -32.21 16 8 H 0.03 2.11 7.99 -2.91 -0.02 2.08 16 9 C 0.01 0.31 4.36 29.85 0.13 0.44 16 10 C 0.05 2.15 4.71 86.30 0.41 2.56 16 11 N -0.49 -17.32 6.24 -943.09 -5.89 -23.21 16 12 C 0.00 -0.11 7.27 80.90 0.59 0.47 16 13 C -0.09 -2.09 3.61 -11.03 -0.04 -2.13 16 14 H 0.10 2.31 8.01 -2.39 -0.02 2.29 16 15 C -0.11 -1.88 5.55 30.48 0.17 -1.71 16 16 C -0.11 -1.65 5.83 30.79 0.18 -1.47 16 17 C -0.14 -2.43 5.44 30.65 0.17 -2.27 16 18 C -0.11 -1.99 6.10 30.67 0.19 -1.80 16 19 C -0.10 -2.48 6.07 30.24 0.18 -2.30 16 20 C 0.02 0.53 1.86 39.79 0.07 0.60 16 21 H 0.08 2.24 5.31 -2.38 -0.01 2.23 16 22 H 0.27 15.96 8.31 -92.71 -0.77 15.19 16 23 H 0.01 0.71 7.20 -2.39 -0.02 0.69 16 24 H 0.01 0.76 7.57 -2.39 -0.02 0.74 16 25 H 0.05 2.31 8.12 -2.39 -0.02 2.29 16 26 H 0.03 1.31 7.38 -2.39 -0.02 1.29 16 27 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 28 H 0.07 1.96 7.39 -2.39 -0.02 1.95 16 29 H 0.06 1.09 7.98 -2.39 -0.02 1.07 16 30 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.07 0.99 7.42 -2.39 -0.02 0.97 16 33 H 0.06 1.34 4.57 -2.39 -0.01 1.33 16 34 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 35 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.08 1.19 7.60 -2.39 -0.02 1.17 16 37 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.07 1.63 7.97 -2.38 -0.02 1.61 16 Total: -1.00 -67.08 286.03 0.00 -67.08 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: 0.95 Total: 7.37 kcal Atomic # 6 Polarization: -41.58 SS G_CDS: 2.76 Total: -38.82 kcal Atomic # 7 Polarization: -78.29 SS G_CDS: -5.59 Total: -83.88 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 1.88 Total: 48.25 kcal Total: -67.08 0.00 -67.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685971952.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.240 kcal (2) G-P(sol) polarization free energy of solvation -67.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds