Wall clock time and date at job start Mon Mar 30 2020 03:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00364 * 2 1 4 4 H 1.48500 * 109.47072 * 240.00094 * 3 2 1 5 5 H 1.48493 * 109.47095 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47014 * 120.00284 * 3 2 1 7 7 C 1.37882 * 119.99849 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00285 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99857 * 359.97438 * 7 2 1 10 10 C 1.52992 * 109.47161 * 180.02562 * 9 7 2 11 11 N 1.46907 * 109.47230 * 179.97438 * 10 9 7 12 12 C 1.49313 * 111.19370 * 268.37080 * 11 10 9 13 13 C 1.52881 * 85.00368 * 219.59630 * 12 11 10 14 14 H 1.09002 * 113.21972 * 272.99958 * 13 12 11 15 15 C 1.51750 * 116.93054 * 139.68855 * 13 12 11 16 16 C 1.52985 * 108.72345 * 183.16868 * 15 13 12 17 17 C 1.53286 * 109.37753 * 359.83463 * 16 15 13 18 18 C 1.52908 * 110.83858 * 82.80638 * 17 16 15 19 19 C 1.53771 * 109.33374 * 259.35407 * 18 17 16 20 20 C 1.46819 * 110.99969 * 170.00092 * 11 10 9 21 21 H 1.09000 * 113.16584 * 27.06506 * 20 11 10 22 22 H 0.97008 * 119.99896 * 359.97438 * 1 2 3 23 23 H 1.08995 * 109.47357 * 59.99722 * 9 7 2 24 24 H 1.09004 * 109.46555 * 300.00078 * 9 7 2 25 25 H 1.09003 * 109.47141 * 60.00251 * 10 9 7 26 26 H 1.08998 * 109.47525 * 300.00207 * 10 9 7 27 27 H 1.08997 * 114.06677 * 105.60273 * 12 11 10 28 28 H 1.09005 * 113.92960 * 333.56974 * 12 11 10 29 29 H 1.09001 * 109.59157 * 63.40157 * 15 13 12 30 30 H 1.08997 * 109.72449 * 303.01852 * 15 13 12 31 31 H 1.08999 * 109.48975 * 239.85856 * 16 15 13 32 32 H 1.09004 * 109.49793 * 119.80903 * 16 15 13 33 33 H 1.08997 * 109.20477 * 322.45172 * 17 16 15 34 34 H 1.08998 * 109.20267 * 203.15855 * 17 16 15 35 35 H 1.09002 * 109.49901 * 19.32209 * 18 17 16 36 36 H 1.09000 * 109.49971 * 139.39095 * 18 17 16 37 37 H 1.09000 * 109.60431 * 179.60616 * 19 18 17 38 38 H 1.08997 * 109.60509 * 300.09666 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2450 -3.6621 -0.0005 11 7 1.5104 -4.9344 0.0001 12 6 1.2753 -5.4212 1.3919 13 6 1.5788 -6.8047 0.8164 14 1 0.7013 -7.2986 0.3992 15 6 2.4191 -7.7354 1.6712 16 6 2.6728 -9.0254 0.8889 17 6 1.9895 -8.9328 -0.4801 18 6 2.8659 -8.1710 -1.4750 19 6 2.3524 -6.7274 -1.6043 20 6 2.4163 -6.0650 -0.2379 21 1 3.4388 -5.8707 0.0857 22 1 -0.4850 0.8401 0.0004 23 1 0.6239 -2.5567 -0.8902 24 1 0.6246 -2.5570 0.8897 25 1 2.8717 -3.6045 0.8895 26 1 2.8717 -3.6045 -0.8905 27 1 0.2483 -5.3018 1.7370 28 1 2.0136 -5.0711 2.1134 29 1 1.8856 -7.9660 2.5933 30 1 3.3701 -7.2587 1.9084 31 1 2.2658 -9.8720 1.4419 32 1 3.7454 -9.1626 0.7515 33 1 1.0370 -8.4143 -0.3711 34 1 1.8080 -9.9386 -0.8590 35 1 3.8960 -8.1603 -1.1186 36 1 2.8225 -8.6611 -2.4476 37 1 2.9785 -6.1782 -2.3075 38 1 1.3216 -6.7362 -1.9584 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000685971953.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:18 Heat of formation + Delta-G solvation = 19.861992 kcal Electronic energy + Delta-G solvation = -15709.764183 eV Core-core repulsion = 13359.512308 eV Total energy + Delta-G solvation = -2350.251875 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.65519 -36.17012 -33.29866 -32.42401 -30.84998 -27.83394 -26.56045 -24.52420 -23.19836 -22.08991 -20.41495 -19.90609 -18.56828 -16.39783 -15.57382 -15.05234 -14.77695 -14.54896 -14.42791 -13.60461 -13.29004 -12.98993 -12.82257 -12.40444 -12.06834 -11.95107 -11.45338 -11.23132 -10.99218 -10.83364 -10.64497 -10.53664 -10.37284 -10.25824 -9.98423 -9.86565 -9.64411 -9.27314 -9.00581 -8.30372 -8.14807 -5.95296 -3.98061 3.35330 3.39539 3.41929 4.26961 4.50174 4.58620 4.74672 4.98479 5.05764 5.17822 5.33317 5.36841 5.40111 5.42137 5.58414 5.69140 5.76119 5.79840 5.97363 6.01025 6.05369 6.12607 6.16184 6.20325 6.24468 6.30528 6.32763 6.38437 6.53697 6.67193 6.94160 7.15345 7.58346 7.81100 7.94745 8.13475 8.47758 9.09364 9.65265 11.15998 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.057275 B = 0.005366 C = 0.005227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.747937 B = 5216.766610 C = 5355.446859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.523 4.523 8 H 0.052 0.948 9 C 0.034 3.966 10 C 0.030 3.970 11 N -0.470 5.470 12 C 0.007 3.993 13 C -0.117 4.117 14 H 0.106 0.894 15 C -0.113 4.113 16 C -0.115 4.115 17 C -0.137 4.137 18 C -0.112 4.112 19 C -0.101 4.101 20 C 0.030 3.970 21 H 0.065 0.935 22 H 0.261 0.739 23 H 0.022 0.978 24 H 0.014 0.986 25 H 0.028 0.972 26 H 0.056 0.944 27 H 0.084 0.916 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.084 0.916 34 H 0.051 0.949 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.766 -17.485 0.995 18.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.562 4.562 8 H 0.070 0.930 9 C -0.003 4.003 10 C -0.098 4.098 11 N -0.192 5.192 12 C -0.121 4.121 13 C -0.136 4.136 14 H 0.124 0.876 15 C -0.151 4.151 16 C -0.153 4.153 17 C -0.174 4.174 18 C -0.150 4.150 19 C -0.139 4.139 20 C -0.080 4.080 21 H 0.083 0.917 22 H 0.070 0.930 23 H 0.041 0.959 24 H 0.033 0.967 25 H 0.046 0.954 26 H 0.074 0.926 27 H 0.102 0.898 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.102 0.898 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.067 -17.202 0.538 17.685 hybrid contribution 1.288 1.086 0.540 1.769 sum 5.354 -16.116 1.078 17.017 Atomic orbital electron populations 1.69972 1.06025 1.26606 1.50638 1.24994 0.94817 0.99115 0.95347 0.86668 0.79586 0.83230 0.78557 1.20257 1.21247 1.20320 1.21191 0.92872 0.91228 1.50916 0.92982 1.18944 0.93821 0.89889 0.97682 1.22818 0.97149 0.90803 0.99037 1.68770 1.32818 1.01274 1.16344 1.23948 1.02100 0.93968 0.92118 1.22914 0.99490 0.94474 0.96672 0.87636 1.21343 0.99703 0.95748 0.98277 1.21663 1.00316 0.97268 0.96019 1.22012 1.00810 0.99829 0.94768 1.21678 0.99261 0.95291 0.98795 1.21332 1.01965 0.94537 0.96070 1.23077 0.95778 0.93344 0.95756 0.91728 0.92978 0.95927 0.96725 0.95381 0.92565 0.89796 0.91676 0.91990 0.92169 0.92425 0.92281 0.89788 0.92977 0.92223 0.92227 0.92245 0.91020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.58 13.29 55.43 0.74 -26.85 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 3 Si 0.89 22.08 29.54 -169.99 -5.02 17.05 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.52 -15.31 9.11 -34.44 -0.31 -15.62 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.03 0.93 5.30 -27.89 -0.15 0.78 16 10 C 0.03 0.66 4.75 -3.82 -0.02 0.64 16 11 N -0.47 -8.93 6.07 -240.92 -1.46 -10.39 16 12 C 0.01 0.12 7.66 -2.77 -0.02 0.10 16 13 C -0.12 -1.56 2.65 -91.22 -0.24 -1.80 16 14 H 0.11 1.38 5.60 -51.93 -0.29 1.09 16 15 C -0.11 -1.24 5.85 -27.37 -0.16 -1.40 16 16 C -0.12 -1.10 6.11 -26.59 -0.16 -1.27 16 17 C -0.14 -1.37 5.43 -26.63 -0.14 -1.52 16 18 C -0.11 -1.19 5.84 -26.38 -0.15 -1.35 16 19 C -0.10 -1.35 5.80 -26.85 -0.16 -1.51 16 20 C 0.03 0.46 2.71 -68.18 -0.18 0.27 16 21 H 0.06 1.00 7.72 -51.93 -0.40 0.60 16 22 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 23 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.01 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.03 0.61 7.41 -51.93 -0.39 0.22 16 26 H 0.06 1.24 8.08 -51.93 -0.42 0.82 16 27 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 28 H 0.07 1.06 7.55 -51.93 -0.39 0.67 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.68 7.92 -51.93 -0.41 0.27 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.55 7.60 -51.93 -0.39 0.15 16 33 H 0.08 0.92 4.57 -51.93 -0.24 0.68 16 34 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.62 7.43 -51.93 -0.39 0.24 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.07 1.01 8.13 -51.93 -0.42 0.59 16 LS Contribution 290.05 15.07 4.37 4.37 Total: -1.00 -30.56 290.05 -9.84 -40.40 By element: Atomic # 1 Polarization: 3.11 SS G_CDS: -6.66 Total: -3.55 kcal Atomic # 6 Polarization: -19.24 SS G_CDS: -1.80 Total: -21.04 kcal Atomic # 7 Polarization: -36.51 SS G_CDS: -0.73 Total: -37.24 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -30.56 -9.84 -40.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685971953.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.265 kcal (2) G-P(sol) polarization free energy of solvation -30.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds