Wall clock time and date at job start Mon Mar 30 2020 03:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00364 * 2 1 4 4 H 1.48500 * 109.47072 * 240.00094 * 3 2 1 5 5 H 1.48493 * 109.47095 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47014 * 120.00284 * 3 2 1 7 7 C 1.37882 * 119.99849 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00285 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99857 * 359.97438 * 7 2 1 10 10 C 1.52992 * 109.47161 * 180.02562 * 9 7 2 11 11 N 1.46907 * 109.47230 * 179.97438 * 10 9 7 12 12 C 1.49313 * 111.19370 * 268.37080 * 11 10 9 13 13 C 1.52881 * 85.00368 * 219.59630 * 12 11 10 14 14 H 1.09002 * 113.21972 * 272.99958 * 13 12 11 15 15 C 1.51750 * 116.93054 * 139.68855 * 13 12 11 16 16 C 1.52985 * 108.72345 * 183.16868 * 15 13 12 17 17 C 1.53286 * 109.37753 * 359.83463 * 16 15 13 18 18 C 1.52908 * 110.83858 * 82.80638 * 17 16 15 19 19 C 1.53771 * 109.33374 * 259.35407 * 18 17 16 20 20 C 1.46819 * 110.99969 * 170.00092 * 11 10 9 21 21 H 1.09000 * 113.16584 * 27.06506 * 20 11 10 22 22 H 0.97008 * 119.99896 * 359.97438 * 1 2 3 23 23 H 1.08995 * 109.47357 * 59.99722 * 9 7 2 24 24 H 1.09004 * 109.46555 * 300.00078 * 9 7 2 25 25 H 1.09003 * 109.47141 * 60.00251 * 10 9 7 26 26 H 1.08998 * 109.47525 * 300.00207 * 10 9 7 27 27 H 1.08997 * 114.06677 * 105.60273 * 12 11 10 28 28 H 1.09005 * 113.92960 * 333.56974 * 12 11 10 29 29 H 1.09001 * 109.59157 * 63.40157 * 15 13 12 30 30 H 1.08997 * 109.72449 * 303.01852 * 15 13 12 31 31 H 1.08999 * 109.48975 * 239.85856 * 16 15 13 32 32 H 1.09004 * 109.49793 * 119.80903 * 16 15 13 33 33 H 1.08997 * 109.20477 * 322.45172 * 17 16 15 34 34 H 1.08998 * 109.20267 * 203.15855 * 17 16 15 35 35 H 1.09002 * 109.49901 * 19.32209 * 18 17 16 36 36 H 1.09000 * 109.49971 * 139.39095 * 18 17 16 37 37 H 1.09000 * 109.60431 * 179.60616 * 19 18 17 38 38 H 1.08997 * 109.60509 * 300.09666 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2450 -3.6621 -0.0005 11 7 1.5104 -4.9344 0.0001 12 6 1.2753 -5.4212 1.3919 13 6 1.5788 -6.8047 0.8164 14 1 0.7013 -7.2986 0.3992 15 6 2.4191 -7.7354 1.6712 16 6 2.6728 -9.0254 0.8889 17 6 1.9895 -8.9328 -0.4801 18 6 2.8659 -8.1710 -1.4750 19 6 2.3524 -6.7274 -1.6043 20 6 2.4163 -6.0650 -0.2379 21 1 3.4388 -5.8707 0.0857 22 1 -0.4850 0.8401 0.0004 23 1 0.6239 -2.5567 -0.8902 24 1 0.6246 -2.5570 0.8897 25 1 2.8717 -3.6045 0.8895 26 1 2.8717 -3.6045 -0.8905 27 1 0.2483 -5.3018 1.7370 28 1 2.0136 -5.0711 2.1134 29 1 1.8856 -7.9660 2.5933 30 1 3.3701 -7.2587 1.9084 31 1 2.2658 -9.8720 1.4419 32 1 3.7454 -9.1626 0.7515 33 1 1.0370 -8.4143 -0.3711 34 1 1.8080 -9.9386 -0.8590 35 1 3.8960 -8.1603 -1.1186 36 1 2.8225 -8.6611 -2.4476 37 1 2.9785 -6.1782 -2.3075 38 1 1.3216 -6.7362 -1.9584 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000685971953.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:18 Heat of formation + Delta-G solvation = 0.528736 kcal Electronic energy + Delta-G solvation = -15710.602535 eV Core-core repulsion = 13359.512308 eV Total energy + Delta-G solvation = -2351.090227 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.88081 -37.32713 -35.38676 -33.45796 -32.67423 -29.30152 -27.89082 -26.11673 -24.49417 -23.39590 -21.93209 -21.25006 -19.59887 -18.56371 -16.81842 -16.56044 -16.33308 -15.96740 -15.55397 -14.89356 -14.63883 -14.46182 -14.03936 -13.86306 -13.51801 -13.10967 -13.02326 -12.95933 -12.61344 -12.50123 -12.04248 -11.85597 -11.58134 -11.51560 -11.30787 -11.21146 -11.07997 -10.97450 -10.62774 -10.57773 -9.65102 -8.22067 -6.35112 1.37803 1.41846 1.49961 2.38483 3.01251 3.10476 3.48949 3.70775 4.06291 4.14941 4.19872 4.24742 4.34986 4.36861 4.43656 4.47903 4.56310 4.60453 4.77429 4.88858 4.96023 4.99927 5.02224 5.07404 5.19250 5.29328 5.31061 5.37355 5.41419 5.45818 5.48393 5.54901 5.68734 5.77879 5.79531 6.16039 6.31275 6.81619 7.34398 8.90015 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.057275 B = 0.005366 C = 0.005227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.747937 B = 5216.766610 C = 5355.446859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.001 3.999 3 Si 0.970 3.030 4 H -0.266 1.266 5 H -0.281 1.281 6 H -0.265 1.265 7 C -0.549 4.549 8 H 0.059 0.941 9 C 0.043 3.957 10 C 0.048 3.952 11 N -0.497 5.497 12 C -0.001 4.001 13 C -0.095 4.095 14 H 0.111 0.889 15 C -0.109 4.109 16 C -0.111 4.111 17 C -0.137 4.137 18 C -0.105 4.105 19 C -0.101 4.101 20 C 0.030 3.970 21 H 0.065 0.935 22 H 0.265 0.735 23 H -0.013 1.013 24 H -0.014 1.014 25 H 0.030 0.970 26 H 0.053 0.947 27 H 0.076 0.924 28 H 0.065 0.935 29 H 0.073 0.927 30 H 0.057 0.943 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.073 0.927 37 H 0.051 0.949 38 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.266 -18.665 1.243 19.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.793 3.207 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.190 1.190 7 C -0.587 4.587 8 H 0.077 0.923 9 C 0.006 3.994 10 C -0.080 4.080 11 N -0.219 5.219 12 C -0.130 4.130 13 C -0.113 4.113 14 H 0.129 0.871 15 C -0.147 4.147 16 C -0.148 4.148 17 C -0.174 4.174 18 C -0.143 4.143 19 C -0.139 4.139 20 C -0.079 4.079 21 H 0.083 0.917 22 H 0.073 0.927 23 H 0.006 0.994 24 H 0.004 0.996 25 H 0.049 0.951 26 H 0.071 0.929 27 H 0.095 0.905 28 H 0.084 0.916 29 H 0.092 0.908 30 H 0.076 0.924 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.070 0.930 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.576 -18.406 0.787 19.248 hybrid contribution 0.758 1.433 0.451 1.683 sum 6.334 -16.973 1.239 18.159 Atomic orbital electron populations 1.70120 1.07962 1.27937 1.51211 1.26019 0.95776 1.03489 0.94416 0.85440 0.78243 0.77727 0.79255 1.19081 1.20569 1.19018 1.21612 0.93448 0.92354 1.51333 0.92255 1.18768 0.94056 0.92112 0.94506 1.22448 0.95707 0.90948 0.98913 1.68741 1.33864 1.00910 1.18435 1.24050 1.01788 0.96187 0.90963 1.22784 0.99581 0.93279 0.95647 0.87137 1.21334 0.99094 0.95833 0.98467 1.21652 1.00910 0.96733 0.95551 1.21996 1.00002 1.00473 0.94950 1.21651 0.99534 0.93166 0.99976 1.21357 1.01363 0.96419 0.94733 1.23185 0.95352 0.91796 0.97584 0.91711 0.92668 0.99439 0.99574 0.95129 0.92853 0.90501 0.91634 0.90820 0.92378 0.90826 0.91491 0.90902 0.91280 0.91586 0.90869 0.93003 0.92135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.92 13.29 21.45 0.28 -58.64 16 2 C 0.00 0.06 5.46 84.66 0.46 0.52 16 3 Si 0.97 45.36 29.54 68.60 2.03 47.38 16 4 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 5 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 6 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 7 C -0.55 -32.81 9.11 25.60 0.23 -32.58 16 8 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 9 C 0.04 2.47 5.30 29.85 0.16 2.62 16 10 C 0.05 2.20 4.75 86.30 0.41 2.61 16 11 N -0.50 -19.33 6.07 -916.13 -5.56 -24.89 16 12 C 0.00 -0.05 7.66 85.65 0.66 0.61 16 13 C -0.09 -2.41 2.65 -10.96 -0.03 -2.44 16 14 H 0.11 2.75 5.60 -2.39 -0.01 2.74 16 15 C -0.11 -2.13 5.85 30.18 0.18 -1.95 16 16 C -0.11 -1.75 6.11 30.68 0.19 -1.56 16 17 C -0.14 -2.34 5.43 30.66 0.17 -2.17 16 18 C -0.11 -1.99 5.84 30.82 0.18 -1.81 16 19 C -0.10 -2.62 5.80 30.52 0.18 -2.44 16 20 C 0.03 0.89 2.71 44.66 0.12 1.01 16 21 H 0.06 1.94 7.72 -2.39 -0.02 1.92 16 22 H 0.26 15.62 8.31 -92.70 -0.77 14.85 16 23 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 24 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 25 H 0.03 1.35 7.41 -2.39 -0.02 1.34 16 26 H 0.05 2.41 8.08 -2.39 -0.02 2.39 16 27 H 0.08 2.59 8.14 -2.39 -0.02 2.58 16 28 H 0.07 2.15 7.55 -2.38 -0.02 2.13 16 29 H 0.07 1.29 8.14 -2.39 -0.02 1.28 16 30 H 0.06 1.17 7.92 -2.39 -0.02 1.16 16 31 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.07 0.99 7.60 -2.39 -0.02 0.97 16 33 H 0.07 1.43 4.57 -2.39 -0.01 1.42 16 34 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.07 1.19 7.43 -2.39 -0.02 1.17 16 36 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.06 1.70 8.13 -2.39 -0.02 1.68 16 Total: -1.00 -67.02 290.05 0.65 -66.37 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: 1.00 Total: 7.34 kcal Atomic # 6 Polarization: -40.47 SS G_CDS: 2.90 Total: -37.57 kcal Atomic # 7 Polarization: -78.25 SS G_CDS: -5.28 Total: -83.53 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.38 kcal Total: -67.02 0.65 -66.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685971953.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.898 kcal (2) G-P(sol) polarization free energy of solvation -67.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds