Wall clock time and date at job start Mon Mar 30 2020 03:13:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00077 * 2 1 4 4 H 1.48510 * 109.46866 * 269.99977 * 3 2 1 5 5 H 1.48502 * 109.47245 * 29.99762 * 3 2 1 6 6 H 1.48494 * 109.47271 * 149.99899 * 3 2 1 7 7 C 1.37875 * 119.99944 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47184 * 179.97438 * 9 7 2 11 11 N 1.46898 * 109.47006 * 179.97438 * 10 9 7 12 12 C 1.47248 * 111.00047 * 91.52713 * 11 10 9 13 13 C 1.53095 * 88.66479 * 137.69936 * 12 11 10 14 14 H 1.08995 * 114.57791 * 221.29630 * 13 12 11 15 15 C 1.51290 * 114.59285 * 87.39889 * 13 12 11 16 16 C 1.51141 * 112.43515 * 181.14724 * 15 13 12 17 17 C 1.50032 * 114.86312 * 85.46119 * 16 15 13 18 18 C 1.55347 * 107.11469 * 297.43624 * 17 16 15 19 19 C 1.53354 * 106.32357 * 76.87233 * 18 17 16 20 20 C 1.47564 * 110.99909 * 188.58978 * 11 10 9 21 21 H 1.09000 * 113.90416 * 337.87068 * 20 11 10 22 22 H 0.96997 * 119.99752 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.47612 * 59.99944 * 9 7 2 24 24 H 1.09001 * 109.47122 * 299.99775 * 9 7 2 25 25 H 1.09001 * 109.47002 * 299.99404 * 10 9 7 26 26 H 1.08993 * 109.46955 * 59.99842 * 10 9 7 27 27 H 1.09001 * 113.35517 * 252.66167 * 12 11 10 28 28 H 1.09000 * 113.35554 * 22.70314 * 12 11 10 29 29 H 1.09001 * 108.88836 * 301.90322 * 15 13 12 30 30 H 1.08999 * 108.89069 * 60.38354 * 15 13 12 31 31 H 1.08997 * 108.40381 * 206.85491 * 16 15 13 32 32 H 1.09003 * 108.40930 * 324.06909 * 16 15 13 33 33 H 1.08998 * 109.92682 * 56.84060 * 17 16 15 34 34 H 1.09003 * 109.92564 * 178.03876 * 17 16 15 35 35 H 1.09004 * 110.07286 * 196.07224 * 18 17 16 36 36 H 1.08992 * 110.07592 * 317.66913 * 18 17 16 37 37 H 1.08994 * 109.32848 * 16.67306 * 19 18 17 38 38 H 1.09011 * 109.32161 * 136.12854 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 7 1.5108 -4.9343 0.0012 12 6 1.2782 -5.4100 -1.3728 13 6 1.6379 -6.8230 -0.9062 14 1 2.2588 -7.3862 -1.6029 15 6 0.4761 -7.6178 -0.3518 16 6 0.8905 -8.9930 0.1191 17 6 1.4144 -9.0474 1.5239 18 6 2.6988 -8.1747 1.5670 19 6 2.2278 -6.7155 1.5935 20 6 2.4261 -6.0733 0.2069 21 1 3.4627 -5.8596 -0.0537 22 1 -0.4849 0.8400 -0.0004 23 1 0.6247 -2.5571 -0.8897 24 1 0.6241 -2.5567 0.8903 25 1 2.8719 -3.6044 -0.8895 26 1 2.8719 -3.6043 0.8905 27 1 0.2413 -5.3118 -1.6944 28 1 1.9827 -5.0008 -2.0969 29 1 0.0443 -7.0728 0.4876 30 1 -0.2813 -7.7241 -1.1283 31 1 0.0280 -9.6556 0.0475 32 1 1.6639 -9.3678 -0.5513 33 1 0.6707 -8.6481 2.2135 34 1 1.6554 -10.0764 1.7909 35 1 3.2735 -8.3988 2.4657 36 1 3.3045 -8.3563 0.6792 37 1 1.1744 -6.6815 1.8712 38 1 2.8103 -6.1618 2.3300 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000685971954.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:20 Heat of formation + Delta-G solvation = 7.711914 kcal Electronic energy + Delta-G solvation = -15712.291038 eV Core-core repulsion = 13361.512296 eV Total energy + Delta-G solvation = -2350.778741 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.48725 -36.34590 -33.37713 -31.91830 -30.94679 -28.14595 -26.46438 -24.45394 -22.90395 -21.87622 -20.77029 -20.15324 -17.98258 -16.36967 -15.80939 -15.26118 -15.08807 -14.47371 -14.04768 -13.76309 -13.01742 -12.72535 -12.55071 -12.39567 -12.08749 -11.97107 -11.71272 -11.13686 -10.96205 -10.85312 -10.70690 -10.50168 -10.43473 -10.27989 -10.03042 -9.79467 -9.61288 -9.28586 -9.03209 -8.31298 -8.16118 -5.96181 -3.98922 3.33438 3.39479 3.42923 4.36381 4.50217 4.55620 4.80636 4.95675 5.11311 5.27082 5.33784 5.35204 5.39442 5.49197 5.67878 5.72757 5.78977 5.88445 5.93579 6.00265 6.10265 6.14708 6.20702 6.24003 6.29384 6.31412 6.39766 6.45387 6.53984 6.72690 6.95281 7.15536 7.60096 7.80735 7.93945 8.12895 8.46858 9.08714 9.64588 11.15182 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.057593 B = 0.005389 C = 0.005228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.053787 B = 5194.806449 C = 5354.984942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.053 0.947 9 C 0.034 3.966 10 C 0.030 3.970 11 N -0.467 5.467 12 C 0.008 3.992 13 C -0.112 4.112 14 H 0.073 0.927 15 C -0.096 4.096 16 C -0.114 4.114 17 C -0.118 4.118 18 C -0.118 4.118 19 C -0.103 4.103 20 C 0.026 3.974 21 H 0.072 0.928 22 H 0.260 0.740 23 H 0.014 0.986 24 H 0.023 0.977 25 H 0.028 0.972 26 H 0.057 0.943 27 H 0.079 0.921 28 H 0.063 0.937 29 H 0.077 0.923 30 H 0.058 0.942 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.065 0.935 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.064 0.936 37 H 0.078 0.922 38 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.461 -17.428 0.134 17.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.071 0.929 9 C -0.004 4.004 10 C -0.098 4.098 11 N -0.189 5.189 12 C -0.121 4.121 13 C -0.131 4.131 14 H 0.092 0.908 15 C -0.134 4.134 16 C -0.152 4.152 17 C -0.155 4.155 18 C -0.156 4.156 19 C -0.141 4.141 20 C -0.084 4.084 21 H 0.090 0.910 22 H 0.070 0.930 23 H 0.032 0.968 24 H 0.041 0.959 25 H 0.046 0.954 26 H 0.075 0.925 27 H 0.098 0.902 28 H 0.081 0.919 29 H 0.096 0.904 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.096 0.904 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.747 -17.147 0.596 17.375 hybrid contribution 1.248 1.131 -0.640 1.802 sum 3.995 -16.016 -0.044 16.506 Atomic orbital electron populations 1.69982 1.06028 1.26503 1.50726 1.24996 0.94818 0.99139 0.95349 0.86607 0.79847 0.83565 0.78048 1.20710 1.21178 1.19919 1.21223 0.92915 0.91204 1.50791 0.92914 1.18950 0.93813 0.89907 0.97691 1.22839 0.97153 0.90712 0.99111 1.68723 1.31715 1.01476 1.16990 1.23605 1.02225 0.93628 0.92616 1.22674 0.97627 0.95301 0.97459 0.90827 1.20584 0.96745 0.94850 1.01199 1.20631 1.00521 0.97230 0.96785 1.21609 0.97520 0.99316 0.97093 1.22118 0.96970 0.95249 1.01249 1.21829 1.02316 0.94185 0.95722 1.24146 0.95822 0.93059 0.95360 0.91003 0.93031 0.96754 0.95892 0.95350 0.92460 0.90243 0.91867 0.90416 0.92333 0.92955 0.92738 0.91642 0.92382 0.92395 0.91741 0.90371 0.92814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.55 13.29 55.43 0.74 -26.81 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.52 -15.24 9.11 -34.44 -0.31 -15.55 16 8 H 0.05 1.49 7.74 -52.48 -0.41 1.08 16 9 C 0.03 0.92 5.29 -27.88 -0.15 0.77 16 10 C 0.03 0.65 4.72 -3.82 -0.02 0.63 16 11 N -0.47 -8.79 5.79 -228.96 -1.33 -10.12 16 12 C 0.01 0.14 7.26 -5.78 -0.04 0.10 16 13 C -0.11 -1.50 3.78 -90.02 -0.34 -1.84 16 14 H 0.07 0.88 8.06 -51.93 -0.42 0.46 16 15 C -0.10 -1.18 4.75 -28.53 -0.14 -1.32 16 16 C -0.11 -1.16 5.14 -29.14 -0.15 -1.31 16 17 C -0.12 -1.17 5.84 -26.96 -0.16 -1.32 16 18 C -0.12 -1.27 5.84 -25.30 -0.15 -1.41 16 19 C -0.10 -1.39 5.20 -25.98 -0.14 -1.53 16 20 C 0.03 0.39 3.25 -67.56 -0.22 0.17 16 21 H 0.07 1.08 7.91 -51.93 -0.41 0.67 16 22 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 23 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.03 0.61 7.34 -51.93 -0.38 0.23 16 26 H 0.06 1.26 8.10 -51.93 -0.42 0.84 16 27 H 0.08 1.33 8.12 -51.93 -0.42 0.90 16 28 H 0.06 1.04 7.42 -51.93 -0.39 0.65 16 29 H 0.08 1.09 6.11 -51.93 -0.32 0.77 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.05 0.53 7.74 -51.93 -0.40 0.13 16 33 H 0.06 0.67 7.53 -51.93 -0.39 0.28 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.68 7.32 -51.93 -0.38 0.30 16 37 H 0.08 1.14 5.59 -51.93 -0.29 0.85 16 38 H 0.05 0.75 8.14 -51.92 -0.42 0.33 16 LS Contribution 289.85 15.07 4.37 4.37 Total: -1.00 -30.41 289.85 -9.86 -40.28 By element: Atomic # 1 Polarization: 2.97 SS G_CDS: -6.72 Total: -3.75 kcal Atomic # 6 Polarization: -19.09 SS G_CDS: -1.90 Total: -20.99 kcal Atomic # 7 Polarization: -36.34 SS G_CDS: -0.59 Total: -36.93 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -30.41 -9.86 -40.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685971954.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.991 kcal (2) G-P(sol) polarization free energy of solvation -30.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds