Wall clock time and date at job start Mon Mar 30 2020 03:13:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00077 * 2 1 4 4 H 1.48510 * 109.46866 * 269.99977 * 3 2 1 5 5 H 1.48502 * 109.47245 * 29.99762 * 3 2 1 6 6 H 1.48494 * 109.47271 * 149.99899 * 3 2 1 7 7 C 1.37875 * 119.99944 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47184 * 179.97438 * 9 7 2 11 11 N 1.46898 * 109.47006 * 179.97438 * 10 9 7 12 12 C 1.47248 * 111.00047 * 91.52713 * 11 10 9 13 13 C 1.53095 * 88.66479 * 137.69936 * 12 11 10 14 14 H 1.08995 * 114.57791 * 221.29630 * 13 12 11 15 15 C 1.51290 * 114.59285 * 87.39889 * 13 12 11 16 16 C 1.51141 * 112.43515 * 181.14724 * 15 13 12 17 17 C 1.50032 * 114.86312 * 85.46119 * 16 15 13 18 18 C 1.55347 * 107.11469 * 297.43624 * 17 16 15 19 19 C 1.53354 * 106.32357 * 76.87233 * 18 17 16 20 20 C 1.47564 * 110.99909 * 188.58978 * 11 10 9 21 21 H 1.09000 * 113.90416 * 337.87068 * 20 11 10 22 22 H 0.96997 * 119.99752 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.47612 * 59.99944 * 9 7 2 24 24 H 1.09001 * 109.47122 * 299.99775 * 9 7 2 25 25 H 1.09001 * 109.47002 * 299.99404 * 10 9 7 26 26 H 1.08993 * 109.46955 * 59.99842 * 10 9 7 27 27 H 1.09001 * 113.35517 * 252.66167 * 12 11 10 28 28 H 1.09000 * 113.35554 * 22.70314 * 12 11 10 29 29 H 1.09001 * 108.88836 * 301.90322 * 15 13 12 30 30 H 1.08999 * 108.89069 * 60.38354 * 15 13 12 31 31 H 1.08997 * 108.40381 * 206.85491 * 16 15 13 32 32 H 1.09003 * 108.40930 * 324.06909 * 16 15 13 33 33 H 1.08998 * 109.92682 * 56.84060 * 17 16 15 34 34 H 1.09003 * 109.92564 * 178.03876 * 17 16 15 35 35 H 1.09004 * 110.07286 * 196.07224 * 18 17 16 36 36 H 1.08992 * 110.07592 * 317.66913 * 18 17 16 37 37 H 1.08994 * 109.32848 * 16.67306 * 19 18 17 38 38 H 1.09011 * 109.32161 * 136.12854 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 7 1.5108 -4.9343 0.0012 12 6 1.2782 -5.4100 -1.3728 13 6 1.6379 -6.8230 -0.9062 14 1 2.2588 -7.3862 -1.6029 15 6 0.4761 -7.6178 -0.3518 16 6 0.8905 -8.9930 0.1191 17 6 1.4144 -9.0474 1.5239 18 6 2.6988 -8.1747 1.5670 19 6 2.2278 -6.7155 1.5935 20 6 2.4261 -6.0733 0.2069 21 1 3.4627 -5.8596 -0.0537 22 1 -0.4849 0.8400 -0.0004 23 1 0.6247 -2.5571 -0.8897 24 1 0.6241 -2.5567 0.8903 25 1 2.8719 -3.6044 -0.8895 26 1 2.8719 -3.6043 0.8905 27 1 0.2413 -5.3118 -1.6944 28 1 1.9827 -5.0008 -2.0969 29 1 0.0443 -7.0728 0.4876 30 1 -0.2813 -7.7241 -1.1283 31 1 0.0280 -9.6556 0.0475 32 1 1.6639 -9.3678 -0.5513 33 1 0.6707 -8.6481 2.2135 34 1 1.6554 -10.0764 1.7909 35 1 3.2735 -8.3988 2.4657 36 1 3.3045 -8.3563 0.6792 37 1 1.1744 -6.6815 1.8712 38 1 2.8103 -6.1618 2.3300 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000685971954.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:20 Heat of formation + Delta-G solvation = -11.128744 kcal Electronic energy + Delta-G solvation = -15713.108030 eV Core-core repulsion = 13361.512296 eV Total energy + Delta-G solvation = -2351.595734 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.73738 -37.45197 -35.45706 -33.22682 -32.50317 -29.66362 -27.81628 -26.11860 -24.30026 -23.15121 -22.19164 -21.38891 -19.18292 -18.51536 -16.99970 -16.55713 -16.51743 -16.29996 -15.49859 -14.98840 -14.32390 -14.07442 -13.87468 -13.67660 -13.49090 -13.44883 -13.12575 -12.82095 -12.64347 -12.51585 -12.05376 -11.83816 -11.70283 -11.51011 -11.31920 -11.24707 -11.10054 -10.81542 -10.80714 -10.58527 -9.64197 -8.22657 -6.35591 1.37661 1.40039 1.51260 2.38214 3.10088 3.12691 3.38056 3.81847 3.99581 4.15299 4.18855 4.20521 4.29453 4.38274 4.47425 4.52619 4.62795 4.72476 4.77962 4.83124 4.94963 5.01145 5.03050 5.20235 5.23179 5.25619 5.36913 5.39698 5.41302 5.45177 5.50240 5.59723 5.67313 5.78513 5.81491 6.16369 6.34610 6.81559 7.34111 8.89720 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.057593 B = 0.005389 C = 0.005228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.053787 B = 5194.806449 C = 5354.984942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.970 3.030 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.262 1.262 7 C -0.547 4.547 8 H 0.060 0.940 9 C 0.043 3.957 10 C 0.048 3.952 11 N -0.492 5.492 12 C -0.001 4.001 13 C -0.088 4.088 14 H 0.101 0.899 15 C -0.096 4.096 16 C -0.111 4.111 17 C -0.116 4.116 18 C -0.111 4.111 19 C -0.100 4.100 20 C 0.025 3.975 21 H 0.077 0.923 22 H 0.264 0.736 23 H -0.015 1.015 24 H -0.013 1.013 25 H 0.032 0.968 26 H 0.054 0.946 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.056 0.944 34 H 0.079 0.921 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.063 0.937 38 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.025 -18.706 -0.140 19.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.794 3.206 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.187 1.187 7 C -0.586 4.586 8 H 0.078 0.922 9 C 0.005 3.995 10 C -0.080 4.080 11 N -0.215 5.215 12 C -0.130 4.130 13 C -0.107 4.107 14 H 0.119 0.881 15 C -0.133 4.133 16 C -0.148 4.148 17 C -0.154 4.154 18 C -0.149 4.149 19 C -0.138 4.138 20 C -0.084 4.084 21 H 0.095 0.905 22 H 0.073 0.927 23 H 0.003 0.997 24 H 0.005 0.995 25 H 0.051 0.949 26 H 0.073 0.927 27 H 0.087 0.913 28 H 0.082 0.918 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.075 0.925 34 H 0.097 0.903 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.082 0.918 38 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 4.318 -18.447 0.322 18.949 hybrid contribution 0.694 1.516 -0.553 1.756 sum 5.013 -16.932 -0.230 17.660 Atomic orbital electron populations 1.70129 1.07980 1.27866 1.51330 1.26023 0.95770 1.03519 0.94443 0.85380 0.78595 0.78031 0.78615 1.19545 1.20552 1.18652 1.21639 0.93475 0.92318 1.51152 0.92188 1.18770 0.94056 0.92170 0.94457 1.22471 0.95690 0.90780 0.99087 1.68689 1.32810 1.01110 1.18858 1.23707 1.01736 0.96054 0.91511 1.22623 0.97721 0.93768 0.96592 0.88102 1.20598 0.96352 0.95854 1.00500 1.20590 1.01507 0.95641 0.97086 1.21612 0.96728 1.00213 0.96816 1.22092 0.97623 0.92904 1.02262 1.21829 1.01384 0.96221 0.94408 1.24279 0.95573 0.91512 0.97067 0.90530 0.92687 0.99667 0.99472 0.94932 0.92703 0.91273 0.91841 0.92812 0.91753 0.91704 0.91422 0.92520 0.90262 0.91225 0.90890 0.91813 0.93878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.97 13.29 21.45 0.28 -58.69 16 2 C 0.00 0.02 5.46 84.65 0.46 0.48 16 3 Si 0.97 45.34 29.54 68.60 2.03 47.37 16 4 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 5 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 6 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 7 C -0.55 -32.62 9.11 25.60 0.23 -32.39 16 8 H 0.06 3.40 7.74 -2.91 -0.02 3.38 16 9 C 0.04 2.45 5.29 29.85 0.16 2.61 16 10 C 0.05 2.17 4.72 86.31 0.41 2.58 16 11 N -0.49 -18.96 5.79 -878.28 -5.09 -24.05 16 12 C 0.00 -0.03 7.26 84.85 0.62 0.58 16 13 C -0.09 -2.22 3.78 -10.41 -0.04 -2.26 16 14 H 0.10 2.06 8.06 -2.39 -0.02 2.04 16 15 C -0.10 -2.19 4.75 29.43 0.14 -2.05 16 16 C -0.11 -1.92 5.14 29.03 0.15 -1.77 16 17 C -0.12 -1.98 5.84 30.45 0.18 -1.80 16 18 C -0.11 -2.10 5.84 31.52 0.18 -1.91 16 19 C -0.10 -2.65 5.20 31.08 0.16 -2.49 16 20 C 0.02 0.73 3.25 44.65 0.15 0.87 16 21 H 0.08 2.20 7.91 -2.39 -0.02 2.18 16 22 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 23 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 24 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 25 H 0.03 1.42 7.34 -2.39 -0.02 1.40 16 26 H 0.05 2.46 8.10 -2.39 -0.02 2.44 16 27 H 0.07 2.38 8.12 -2.39 -0.02 2.36 16 28 H 0.06 2.08 7.42 -2.39 -0.02 2.07 16 29 H 0.05 1.50 6.11 -2.39 -0.01 1.49 16 30 H 0.06 1.40 8.14 -2.39 -0.02 1.39 16 31 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.07 1.03 7.74 -2.39 -0.02 1.01 16 33 H 0.06 1.07 7.53 -2.39 -0.02 1.05 16 34 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 36 H 0.07 1.29 7.32 -2.39 -0.02 1.27 16 37 H 0.06 1.87 5.59 -2.39 -0.01 1.85 16 38 H 0.04 1.20 8.14 -2.38 -0.02 1.18 16 Total: -1.00 -67.05 289.85 1.02 -66.03 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: 1.00 Total: 6.87 kcal Atomic # 6 Polarization: -40.34 SS G_CDS: 2.80 Total: -37.54 kcal Atomic # 7 Polarization: -77.93 SS G_CDS: -4.80 Total: -82.73 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Total: -67.05 1.02 -66.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685971954.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.904 kcal (2) G-P(sol) polarization free energy of solvation -67.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds