Wall clock time and date at job start Mon Mar 30 2020 03:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.46929 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.46929 * 179.97438 * 11 10 9 13 13 N 1.46906 * 109.47410 * 179.97438 * 12 11 10 14 14 C 1.50629 * 110.99588 * 82.05737 * 13 12 11 15 15 C 1.49737 * 81.80217 * 156.78563 * 14 13 12 16 16 H 1.08998 * 113.91956 * 67.97045 * 15 14 13 17 17 C 1.51172 * 129.55445 * 226.43238 * 15 14 13 18 18 C 1.55607 * 104.49148 * 118.29054 * 17 15 14 19 19 C 1.56152 * 104.84447 * 351.11327 * 18 17 15 20 20 C 1.42989 * 111.00106 * 169.99947 * 13 12 11 21 21 H 1.09003 * 113.18771 * 314.38860 * 20 13 12 22 22 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 24 24 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 25 25 H 1.09000 * 109.46986 * 300.00089 * 10 9 7 26 26 H 1.09002 * 109.46857 * 60.00224 * 10 9 7 27 27 H 1.09000 * 109.47441 * 299.99910 * 11 10 9 28 28 H 1.09002 * 109.47087 * 60.00464 * 11 10 9 29 29 H 1.09004 * 109.47429 * 300.00346 * 12 11 10 30 30 H 1.09006 * 109.47297 * 60.00171 * 12 11 10 31 31 H 1.09007 * 114.47824 * 270.01529 * 14 13 12 32 32 H 1.09004 * 114.48192 * 43.55025 * 14 13 12 33 33 H 1.09001 * 110.43307 * 359.53318 * 17 15 14 34 34 H 1.08998 * 110.53636 * 237.09280 * 17 15 14 35 35 H 1.09002 * 110.36087 * 232.27363 * 18 17 15 36 36 H 1.08994 * 110.45524 * 110.00644 * 18 17 15 37 37 H 1.08999 * 111.02214 * 216.05680 * 19 18 17 38 38 H 1.09005 * 111.05406 * 92.17753 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4803 -4.9870 0.0012 12 6 2.4746 -6.1499 0.0005 13 7 1.7402 -7.4222 0.0018 14 6 1.3006 -7.7930 -1.3904 15 6 1.2870 -9.1646 -0.7899 16 1 0.5116 -9.3101 -0.0378 17 6 1.8470 -10.4592 -1.3337 18 6 2.9224 -10.8858 -0.2930 19 6 3.0563 -9.6626 0.6683 20 6 2.6223 -8.5234 -0.2306 21 1 3.3199 -8.3489 -1.0497 22 1 -0.4850 -0.8401 -0.0004 23 1 0.6241 -2.5566 0.8903 24 1 0.6247 -2.5571 -0.8897 25 1 2.8720 -3.6043 -0.8894 26 1 2.8720 -3.6043 0.8906 27 1 0.8540 -5.0446 0.8914 28 1 0.8534 -5.0451 -0.8886 29 1 3.1007 -6.0922 -0.8899 30 1 3.1019 -6.0922 0.8901 31 1 0.3180 -7.4127 -1.6701 32 1 2.0594 -7.6436 -2.1586 33 1 2.3052 -10.2956 -2.3091 34 1 1.0646 -11.2147 -1.4037 35 1 3.8725 -11.0842 -0.7891 36 1 2.5915 -11.7665 0.2574 37 1 4.0884 -9.5324 0.9939 38 1 2.3882 -9.7619 1.5238 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687776836.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:56 Heat of formation + Delta-G solvation = 58.733185 kcal Electronic energy + Delta-G solvation = -15054.543193 eV Core-core repulsion = 12705.976900 eV Total energy + Delta-G solvation = -2348.566293 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.98270 -35.94650 -34.43241 -32.51504 -29.88682 -28.57651 -25.99605 -24.28786 -23.49475 -21.43303 -20.87816 -20.07628 -19.58676 -16.61684 -15.67511 -15.33890 -15.10296 -14.82062 -14.54735 -13.77431 -13.68934 -13.07140 -12.74516 -12.28721 -12.17753 -11.76137 -11.45723 -11.37066 -11.07282 -10.95144 -10.76527 -10.64832 -10.58960 -10.49126 -10.08686 -9.73492 -9.61942 -9.30024 -9.14268 -8.44873 -8.27310 -6.30982 -3.99305 3.27348 3.46238 3.48737 3.67437 4.17123 4.47479 4.58972 4.66165 4.76529 4.96113 5.03952 5.06545 5.24978 5.35602 5.43640 5.46602 5.53658 5.58576 5.70140 5.71333 5.76645 5.85627 5.89391 5.99560 6.05286 6.22495 6.25986 6.27366 6.50563 6.73678 6.86029 6.95973 7.11596 7.49045 7.62701 8.29097 8.52290 8.94620 9.73245 11.09776 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.081844 B = 0.003974 C = 0.003885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 342.030096 B = 7044.976487 C = 7205.722646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.012 3.988 3 Si 1.069 2.931 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.288 1.288 7 C -0.602 4.602 8 H 0.047 0.953 9 C 0.008 3.992 10 C -0.102 4.102 11 C -0.110 4.110 12 C 0.006 3.994 13 N -0.426 5.426 14 C 0.011 3.989 15 C -0.140 4.140 16 H 0.111 0.889 17 C -0.106 4.106 18 C -0.119 4.119 19 C -0.095 4.095 20 C -0.028 4.028 21 H 0.075 0.925 22 H 0.268 0.732 23 H 0.006 0.994 24 H 0.005 0.995 25 H 0.046 0.954 26 H 0.048 0.952 27 H 0.062 0.938 28 H 0.054 0.946 29 H 0.041 0.959 30 H 0.072 0.928 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.062 0.938 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.138 -21.161 -2.169 21.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.191 4.191 3 Si 0.897 3.103 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.215 1.215 7 C -0.640 4.640 8 H 0.065 0.935 9 C -0.029 4.029 10 C -0.141 4.141 11 C -0.148 4.148 12 C -0.122 4.122 13 N -0.147 5.147 14 C -0.117 4.117 15 C -0.159 4.159 16 H 0.129 0.871 17 C -0.144 4.144 18 C -0.158 4.158 19 C -0.133 4.133 20 C -0.138 4.138 21 H 0.092 0.908 22 H 0.079 0.921 23 H 0.025 0.975 24 H 0.023 0.977 25 H 0.064 0.936 26 H 0.066 0.934 27 H 0.081 0.919 28 H 0.072 0.928 29 H 0.059 0.941 30 H 0.090 0.910 31 H 0.105 0.895 32 H 0.096 0.904 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.494 -19.416 -1.528 19.988 hybrid contribution 0.942 -1.489 -0.605 1.863 sum 5.436 -20.905 -2.133 21.705 Atomic orbital electron populations 1.70775 1.06876 1.30584 1.46890 1.25868 0.96599 1.02745 0.93893 0.83548 0.74876 0.75372 0.76462 1.20765 1.21470 1.21501 1.22098 0.94245 0.92220 1.55453 0.93457 1.19219 0.94672 0.93171 0.95844 1.21474 0.98803 0.93550 1.00229 1.21556 0.97736 0.93636 1.01850 1.22902 0.96914 0.91415 1.01010 1.70736 1.21848 1.00848 1.21290 1.23804 1.02116 0.94505 0.91245 1.23407 0.98976 0.92060 1.01502 0.87100 1.21582 0.97970 0.96392 0.98486 1.22931 0.98720 0.97674 0.96430 1.21785 1.01114 0.92728 0.97678 1.24263 0.96025 0.94388 0.99083 0.90765 0.92115 0.97531 0.97651 0.93551 0.93355 0.91913 0.92752 0.94080 0.90971 0.89536 0.90420 0.91720 0.91650 0.91590 0.91337 0.91968 0.90730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -29.02 13.65 55.43 0.76 -28.27 16 2 C 0.01 0.37 5.46 -17.82 -0.10 0.27 16 3 Si 1.07 26.04 29.90 -169.99 -5.08 20.96 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.60 -17.94 9.11 -34.44 -0.31 -18.26 16 8 H 0.05 1.38 7.74 -52.48 -0.41 0.97 16 9 C 0.01 0.21 4.28 -27.88 -0.12 0.09 16 10 C -0.10 -2.23 5.15 -26.73 -0.14 -2.37 16 11 C -0.11 -2.01 5.42 -26.73 -0.14 -2.15 16 12 C 0.01 0.09 4.93 -3.82 -0.02 0.07 16 13 N -0.43 -5.89 6.25 -366.27 -2.29 -8.18 16 14 C 0.01 0.13 7.21 -32.63 -0.24 -0.11 16 15 C -0.14 -1.46 4.60 -93.36 -0.43 -1.89 16 16 H 0.11 1.25 8.07 -51.93 -0.42 0.83 16 17 C -0.11 -0.87 6.62 -26.26 -0.17 -1.04 16 18 C -0.12 -0.92 6.99 -23.65 -0.17 -1.09 16 19 C -0.09 -0.91 6.68 -25.82 -0.17 -1.08 16 20 C -0.03 -0.32 3.70 -96.91 -0.36 -0.68 16 21 H 0.07 0.84 6.91 -51.93 -0.36 0.48 16 22 H 0.27 8.50 7.22 -40.82 -0.29 8.20 16 23 H 0.01 0.18 8.01 -51.93 -0.42 -0.23 16 24 H 0.01 0.15 8.01 -51.93 -0.42 -0.27 16 25 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 27 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.05 0.99 7.98 -51.93 -0.41 0.58 16 29 H 0.04 0.61 7.59 -51.93 -0.39 0.21 16 30 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.08 0.85 7.07 -51.93 -0.37 0.48 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 299.44 15.07 4.51 4.51 Total: -1.00 -31.59 299.44 -11.40 -42.99 By element: Atomic # 1 Polarization: 3.15 SS G_CDS: -6.93 Total: -3.78 kcal Atomic # 6 Polarization: -25.87 SS G_CDS: -2.37 Total: -28.23 kcal Atomic # 7 Polarization: -34.91 SS G_CDS: -1.53 Total: -36.45 kcal Atomic # 14 Polarization: 26.04 SS G_CDS: -5.08 Total: 20.96 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -31.59 -11.40 -42.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687776836.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.725 kcal (2) G-P(sol) polarization free energy of solvation -31.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds