Wall clock time and date at job start Mon Mar 30 2020 03:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.46929 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.46929 * 179.97438 * 11 10 9 13 13 N 1.46906 * 109.47410 * 179.97438 * 12 11 10 14 14 C 1.50629 * 110.99588 * 82.05737 * 13 12 11 15 15 C 1.49737 * 81.80217 * 156.78563 * 14 13 12 16 16 H 1.08998 * 113.91956 * 67.97045 * 15 14 13 17 17 C 1.51172 * 129.55445 * 226.43238 * 15 14 13 18 18 C 1.55607 * 104.49148 * 118.29054 * 17 15 14 19 19 C 1.56152 * 104.84447 * 351.11327 * 18 17 15 20 20 C 1.42989 * 111.00106 * 169.99947 * 13 12 11 21 21 H 1.09003 * 113.18771 * 314.38860 * 20 13 12 22 22 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 24 24 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 25 25 H 1.09000 * 109.46986 * 300.00089 * 10 9 7 26 26 H 1.09002 * 109.46857 * 60.00224 * 10 9 7 27 27 H 1.09000 * 109.47441 * 299.99910 * 11 10 9 28 28 H 1.09002 * 109.47087 * 60.00464 * 11 10 9 29 29 H 1.09004 * 109.47429 * 300.00346 * 12 11 10 30 30 H 1.09006 * 109.47297 * 60.00171 * 12 11 10 31 31 H 1.09007 * 114.47824 * 270.01529 * 14 13 12 32 32 H 1.09004 * 114.48192 * 43.55025 * 14 13 12 33 33 H 1.09001 * 110.43307 * 359.53318 * 17 15 14 34 34 H 1.08998 * 110.53636 * 237.09280 * 17 15 14 35 35 H 1.09002 * 110.36087 * 232.27363 * 18 17 15 36 36 H 1.08994 * 110.45524 * 110.00644 * 18 17 15 37 37 H 1.08999 * 111.02214 * 216.05680 * 19 18 17 38 38 H 1.09005 * 111.05406 * 92.17753 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4803 -4.9870 0.0012 12 6 2.4746 -6.1499 0.0005 13 7 1.7402 -7.4222 0.0018 14 6 1.3006 -7.7930 -1.3904 15 6 1.2870 -9.1646 -0.7899 16 1 0.5116 -9.3101 -0.0378 17 6 1.8470 -10.4592 -1.3337 18 6 2.9224 -10.8858 -0.2930 19 6 3.0563 -9.6626 0.6683 20 6 2.6223 -8.5234 -0.2306 21 1 3.3199 -8.3489 -1.0497 22 1 -0.4850 -0.8401 -0.0004 23 1 0.6241 -2.5566 0.8903 24 1 0.6247 -2.5571 -0.8897 25 1 2.8720 -3.6043 -0.8894 26 1 2.8720 -3.6043 0.8906 27 1 0.8540 -5.0446 0.8914 28 1 0.8534 -5.0451 -0.8886 29 1 3.1007 -6.0922 -0.8899 30 1 3.1019 -6.0922 0.8901 31 1 0.3180 -7.4127 -1.6701 32 1 2.0594 -7.6436 -2.1586 33 1 2.3052 -10.2956 -2.3091 34 1 1.0646 -11.2147 -1.4037 35 1 3.8725 -11.0842 -0.7891 36 1 2.5915 -11.7665 0.2574 37 1 4.0884 -9.5324 0.9939 38 1 2.3882 -9.7619 1.5238 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687776836.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:56 Heat of formation + Delta-G solvation = 37.518327 kcal Electronic energy + Delta-G solvation = -15055.463139 eV Core-core repulsion = 12705.976900 eV Total energy + Delta-G solvation = -2349.486238 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.88701 -37.33947 -35.95246 -34.33886 -31.27947 -29.66786 -27.51438 -25.31522 -25.08393 -23.02839 -22.06396 -21.43395 -20.40574 -18.88279 -16.70344 -16.62794 -15.87193 -15.77048 -15.63513 -15.54365 -15.14713 -14.97252 -14.21029 -13.81825 -13.26910 -12.94098 -12.90738 -12.61094 -12.42373 -12.16129 -12.08440 -12.00153 -11.93675 -11.68465 -11.54642 -11.45969 -11.31869 -10.68047 -10.57282 -10.32099 -10.03154 -8.72656 -6.43235 1.50543 1.59879 1.79480 2.41646 2.55532 3.12637 3.23314 3.62279 3.72111 3.94908 4.00002 4.11334 4.22603 4.31651 4.35060 4.41612 4.41931 4.59121 4.62730 4.68647 4.76133 4.84385 4.91807 4.96582 5.02256 5.06215 5.11202 5.14350 5.18711 5.35092 5.38488 5.42629 5.50371 5.52090 5.97073 5.99697 6.15075 6.53900 7.40009 8.68012 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.081844 B = 0.003974 C = 0.003885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 342.030096 B = 7044.976487 C = 7205.722646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.043 4.043 3 Si 1.121 2.879 4 H -0.282 1.282 5 H -0.268 1.268 6 H -0.267 1.267 7 C -0.623 4.623 8 H 0.051 0.949 9 C 0.007 3.993 10 C -0.090 4.090 11 C -0.098 4.098 12 C 0.016 3.984 13 N -0.449 5.449 14 C 0.008 3.992 15 C -0.129 4.129 16 H 0.099 0.901 17 C -0.102 4.102 18 C -0.112 4.112 19 C -0.096 4.096 20 C -0.036 4.036 21 H 0.081 0.919 22 H 0.254 0.746 23 H -0.015 1.015 24 H -0.013 1.013 25 H 0.051 0.949 26 H 0.049 0.951 27 H 0.050 0.950 28 H 0.051 0.949 29 H 0.049 0.951 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.066 0.934 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.748 -22.228 -2.688 23.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.239 4.239 3 Si 0.941 3.059 4 H -0.207 1.207 5 H -0.193 1.193 6 H -0.192 1.192 7 C -0.661 4.661 8 H 0.070 0.930 9 C -0.030 4.030 10 C -0.129 4.129 11 C -0.136 4.136 12 C -0.112 4.112 13 N -0.170 5.170 14 C -0.120 4.120 15 C -0.148 4.148 16 H 0.117 0.883 17 C -0.140 4.140 18 C -0.150 4.150 19 C -0.135 4.135 20 C -0.146 4.146 21 H 0.098 0.902 22 H 0.063 0.937 23 H 0.003 0.997 24 H 0.005 0.995 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.087 0.913 31 H 0.098 0.902 32 H 0.107 0.893 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.085 0.915 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.107 -20.522 -2.047 21.509 hybrid contribution 0.397 -1.198 -0.433 1.334 sum 6.505 -21.719 -2.481 22.808 Atomic orbital electron populations 1.70919 1.08001 1.29773 1.48828 1.27584 0.96642 1.07135 0.92578 0.82908 0.74108 0.70745 0.78146 1.20715 1.19289 1.19182 1.22553 0.94770 0.93567 1.55194 0.93022 1.19195 0.95184 0.94782 0.93850 1.21305 0.97750 0.93358 1.00456 1.21366 0.97889 0.93226 1.01132 1.22712 0.95994 0.91256 1.01271 1.70791 1.22744 1.00580 1.22915 1.23891 1.02060 0.95424 0.90584 1.23302 0.98040 0.92607 1.00891 0.88271 1.21599 0.98357 0.95166 0.98902 1.22914 0.99185 0.97032 0.95891 1.21847 1.01114 0.92829 0.97671 1.24375 0.96638 0.93587 0.99956 0.90165 0.93675 0.99691 0.99493 0.93014 0.93248 0.93140 0.92977 0.93238 0.91260 0.90233 0.89269 0.90896 0.90528 0.90358 0.90153 0.91521 0.91597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.55 13.65 21.45 0.29 -60.26 16 2 C -0.04 -2.57 5.46 84.65 0.46 -2.11 16 3 Si 1.12 51.60 29.90 68.60 2.05 53.65 16 4 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 5 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 6 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 7 C -0.62 -37.43 9.11 25.60 0.23 -37.19 16 8 H 0.05 2.99 7.74 -2.91 -0.02 2.97 16 9 C 0.01 0.39 4.28 29.85 0.13 0.51 16 10 C -0.09 -3.97 5.15 30.59 0.16 -3.81 16 11 C -0.10 -3.61 5.42 30.59 0.17 -3.45 16 12 C 0.02 0.47 4.93 86.30 0.43 0.90 16 13 N -0.45 -12.07 6.25 ******* -8.21 -20.28 16 14 C 0.01 0.17 7.21 65.55 0.47 0.65 16 15 C -0.13 -2.48 4.60 -9.44 -0.04 -2.53 16 16 H 0.10 2.15 8.07 -2.39 -0.02 2.13 16 17 C -0.10 -1.40 6.62 30.90 0.20 -1.19 16 18 C -0.11 -1.41 6.99 32.59 0.23 -1.18 16 19 C -0.10 -1.67 6.68 31.19 0.21 -1.46 16 20 C -0.04 -0.76 3.70 28.06 0.10 -0.66 16 21 H 0.08 1.62 6.91 -2.39 -0.02 1.60 16 22 H 0.25 16.66 7.22 -92.71 -0.67 16.00 16 23 H -0.02 -0.90 8.01 -2.39 -0.02 -0.92 16 24 H -0.01 -0.77 8.01 -2.38 -0.02 -0.79 16 25 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 26 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 27 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.05 1.92 7.98 -2.39 -0.02 1.90 16 29 H 0.05 1.39 7.59 -2.38 -0.02 1.37 16 30 H 0.07 2.10 8.14 -2.38 -0.02 2.08 16 31 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 32 H 0.09 1.79 7.07 -2.39 -0.02 1.78 16 33 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.08 0.90 8.14 -2.39 -0.02 0.89 16 35 H 0.08 0.82 8.14 -2.39 -0.02 0.81 16 36 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 Total: -1.00 -67.94 299.44 -2.03 -69.98 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: 1.09 Total: 8.43 kcal Atomic # 6 Polarization: -54.26 SS G_CDS: 2.75 Total: -51.52 kcal Atomic # 7 Polarization: -72.62 SS G_CDS: -7.92 Total: -80.54 kcal Atomic # 14 Polarization: 51.60 SS G_CDS: 2.05 Total: 53.65 kcal Total: -67.94 -2.03 -69.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687776836.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.496 kcal (2) G-P(sol) polarization free energy of solvation -67.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds