Wall clock time and date at job start Mon Mar 30 2020 03:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86806 * 120.00023 * 2 1 4 4 H 1.48501 * 109.46737 * 269.99687 * 3 2 1 5 5 H 1.48505 * 109.47054 * 29.99351 * 3 2 1 6 6 H 1.48494 * 109.47414 * 149.99579 * 3 2 1 7 7 C 1.37879 * 120.00173 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99604 * 0.02562 * 7 2 1 9 9 C 1.50693 * 119.99811 * 180.02562 * 7 2 1 10 10 C 1.53008 * 109.46984 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47219 * 179.97438 * 10 9 7 12 12 C 1.52995 * 109.47124 * 180.02562 * 11 10 9 13 13 N 1.46902 * 109.47050 * 180.02562 * 12 11 10 14 14 C 1.47488 * 111.00130 * 78.68718 * 13 12 11 15 15 C 1.53247 * 87.89140 * 139.48689 * 14 13 12 16 16 H 1.09002 * 116.02963 * 90.95714 * 15 14 13 17 17 C 1.53390 * 114.46233 * 228.56355 * 15 14 13 18 18 C 1.53509 * 107.40187 * 73.49590 * 17 15 14 19 19 C 1.53590 * 107.19273 * 359.26097 * 18 17 15 20 20 C 1.47664 * 110.99787 * 174.67250 * 13 12 11 21 21 H 1.08996 * 115.94099 * 102.40094 * 20 13 12 22 22 H 0.97004 * 119.99765 * 0.02562 * 1 2 3 23 23 H 1.08996 * 109.47266 * 60.00670 * 9 7 2 24 24 H 1.09000 * 109.47299 * 299.99931 * 9 7 2 25 25 H 1.09005 * 109.46463 * 60.00306 * 10 9 7 26 26 H 1.08995 * 109.47211 * 300.00529 * 10 9 7 27 27 H 1.09000 * 109.47236 * 300.00035 * 11 10 9 28 28 H 1.08998 * 109.47325 * 60.00143 * 11 10 9 29 29 H 1.09008 * 109.46878 * 300.00128 * 12 11 10 30 30 H 1.08999 * 109.47710 * 59.99969 * 12 11 10 31 31 H 1.08998 * 113.48043 * 254.23908 * 14 13 12 32 32 H 1.08998 * 113.48390 * 24.73000 * 14 13 12 33 33 H 1.09002 * 109.85687 * 192.94507 * 17 15 14 34 34 H 1.09001 * 109.86142 * 313.90596 * 17 15 14 35 35 H 1.08997 * 109.89751 * 118.65427 * 18 17 15 36 36 H 1.09001 * 109.89167 * 239.70656 * 18 17 15 37 37 H 1.09005 * 110.12481 * 136.96644 * 19 18 17 38 38 H 1.08994 * 110.12692 * 258.58218 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1939 0.0011 10 6 4.0216 -2.6365 0.0010 11 6 5.5516 -2.6365 0.0009 12 6 6.0616 -4.0789 0.0002 13 7 7.5306 -4.0789 0.0007 14 6 8.0587 -3.8096 1.3513 15 6 9.1255 -4.8771 1.0854 16 1 10.0589 -4.5222 0.6483 17 6 9.2875 -5.9073 2.2102 18 6 8.0697 -6.8404 2.1571 19 6 7.1731 -6.3517 1.0098 20 6 8.0597 -5.4516 0.1280 21 1 8.4275 -5.9079 -0.7909 22 1 -0.4850 0.8401 -0.0004 23 1 3.8745 -0.6800 0.8911 24 1 3.8752 -0.6803 -0.8888 25 1 3.6586 -3.1501 -0.8894 26 1 3.6579 -3.1506 0.8906 27 1 5.9149 -2.1226 -0.8890 28 1 5.9150 -2.1227 0.8909 29 1 5.6982 -4.5932 0.8900 30 1 5.6983 -4.5924 -0.8900 31 1 8.4677 -2.8058 1.4655 32 1 7.3663 -4.0769 2.1496 33 1 10.2011 -6.4819 2.0573 34 1 9.3261 -5.4000 3.1742 35 1 8.3940 -7.8630 1.9647 36 1 7.5263 -6.7950 3.1010 37 1 6.8080 -7.2005 0.4316 38 1 6.3342 -5.7802 1.4068 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687776839.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:03 Heat of formation + Delta-G solvation = 18.078243 kcal Electronic energy + Delta-G solvation = -15275.473910 eV Core-core repulsion = 12925.144686 eV Total energy + Delta-G solvation = -2350.329224 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.46174 -35.54196 -33.87665 -32.29221 -30.45518 -28.88403 -26.39074 -25.06727 -23.76534 -21.74428 -20.02224 -19.76824 -18.46888 -16.83266 -16.56427 -15.78765 -15.32319 -14.73382 -14.23606 -13.81205 -13.55615 -13.00731 -12.71553 -12.44603 -12.12327 -11.88418 -11.59924 -11.47865 -11.16341 -11.10268 -10.84545 -10.69529 -10.61599 -10.35390 -10.19741 -9.84139 -9.63924 -9.41006 -9.11308 -8.76734 -8.49578 -6.00508 -3.97930 3.34208 3.41017 3.46014 3.86763 4.15672 4.36055 4.49341 4.75450 4.91215 4.99441 5.11154 5.20933 5.25775 5.33810 5.36865 5.42369 5.44421 5.65418 5.70567 5.76338 5.80447 5.86284 5.91593 6.00282 6.11279 6.18775 6.22533 6.30416 6.53825 6.70855 6.81043 6.96266 7.15891 7.37953 7.51007 7.84948 8.58973 9.04761 9.62697 11.13138 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.055875 B = 0.004687 C = 0.004525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.000731 B = 5971.901509 C = 6186.444822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.065 3.935 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.519 4.519 8 H 0.070 0.930 9 C -0.014 4.014 10 C -0.101 4.101 11 C -0.113 4.113 12 C 0.012 3.988 13 N -0.464 5.464 14 C 0.005 3.995 15 C -0.119 4.119 16 H 0.105 0.895 17 C -0.116 4.116 18 C -0.119 4.119 19 C -0.150 4.150 20 C 0.023 3.977 21 H 0.101 0.899 22 H 0.262 0.738 23 H 0.014 0.986 24 H 0.011 0.989 25 H 0.052 0.948 26 H 0.050 0.950 27 H 0.063 0.937 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.069 0.931 38 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.009 -12.087 3.628 22.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.557 4.557 8 H 0.089 0.911 9 C -0.051 4.051 10 C -0.139 4.139 11 C -0.151 4.151 12 C -0.116 4.116 13 N -0.185 5.185 14 C -0.124 4.124 15 C -0.138 4.138 16 H 0.123 0.877 17 C -0.154 4.154 18 C -0.157 4.157 19 C -0.189 4.189 20 C -0.086 4.086 21 H 0.119 0.881 22 H 0.072 0.928 23 H 0.032 0.968 24 H 0.029 0.971 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.081 0.919 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.092 0.908 31 H 0.100 0.900 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 18.993 -11.529 3.041 22.426 hybrid contribution -0.111 0.430 0.602 0.748 sum 18.882 -11.100 3.643 22.204 Atomic orbital electron populations 1.69926 1.06312 1.26809 1.51496 1.25048 0.94730 0.99204 0.94626 0.86761 0.80347 0.83565 0.78520 1.20290 1.21440 1.19026 1.21193 0.89702 0.94393 1.50457 0.91146 1.19568 0.96926 0.92507 0.96136 1.21429 0.91910 0.99767 1.00836 1.21595 0.97264 0.94375 1.01873 1.22896 0.88341 0.99029 1.01357 1.69171 1.10116 1.14380 1.24847 1.23750 0.96564 0.99842 0.92219 1.23332 0.97702 0.96321 0.96448 0.87685 1.21850 0.98266 0.96569 0.98674 1.21935 0.96058 0.99239 0.98455 1.22620 0.99263 0.99958 0.97035 1.24083 0.95335 0.90979 0.98213 0.88101 0.92814 0.96794 0.97096 0.92888 0.93121 0.91854 0.92784 0.93106 0.90808 0.89990 0.91171 0.91661 0.91558 0.91798 0.91769 0.91174 0.89800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.59 13.96 55.43 0.77 -27.82 16 2 C 0.06 1.94 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 22.36 27.47 -169.99 -4.67 17.69 16 4 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.27 -6.51 6.54 56.52 0.37 -6.14 16 7 C -0.52 -15.30 9.66 -34.44 -0.33 -15.64 16 8 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 9 C -0.01 -0.35 4.04 -27.88 -0.11 -0.46 16 10 C -0.10 -2.07 5.15 -26.73 -0.14 -2.21 16 11 C -0.11 -1.93 5.37 -26.73 -0.14 -2.07 16 12 C 0.01 0.17 4.38 -3.83 -0.02 0.15 16 13 N -0.46 -6.13 6.38 -234.95 -1.50 -7.62 16 14 C 0.01 0.06 6.51 -7.45 -0.05 0.01 16 15 C -0.12 -1.15 5.19 -89.58 -0.47 -1.62 16 16 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 17 C -0.12 -0.94 6.33 -26.27 -0.17 -1.10 16 18 C -0.12 -0.99 6.72 -26.16 -0.18 -1.16 16 19 C -0.15 -1.48 5.38 -25.86 -0.14 -1.62 16 20 C 0.02 0.25 5.24 -70.10 -0.37 -0.11 16 21 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 22 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 23 H 0.01 0.34 7.20 -51.93 -0.37 -0.03 16 24 H 0.01 0.27 7.57 -51.93 -0.39 -0.13 16 25 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 26 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.05 0.92 7.84 -51.93 -0.41 0.51 16 29 H 0.05 0.70 4.96 -51.92 -0.26 0.44 16 30 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 31 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.07 0.82 6.76 -51.93 -0.35 0.47 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.08 0.93 4.54 -51.93 -0.24 0.69 16 LS Contribution 290.87 15.07 4.38 4.38 Total: -1.00 -31.00 290.87 -9.89 -40.89 By element: Atomic # 1 Polarization: 3.15 SS G_CDS: -6.68 Total: -3.53 kcal Atomic # 6 Polarization: -21.79 SS G_CDS: -2.20 Total: -23.99 kcal Atomic # 7 Polarization: -34.72 SS G_CDS: -0.72 Total: -35.44 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -4.67 Total: 17.69 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -31.00 -9.89 -40.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687776839.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.965 kcal (2) G-P(sol) polarization free energy of solvation -30.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds