Wall clock time and date at job start Mon Mar 30 2020 03:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86806 * 120.00023 * 2 1 4 4 H 1.48501 * 109.46737 * 269.99687 * 3 2 1 5 5 H 1.48505 * 109.47054 * 29.99351 * 3 2 1 6 6 H 1.48494 * 109.47414 * 149.99579 * 3 2 1 7 7 C 1.37879 * 120.00173 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99604 * 0.02562 * 7 2 1 9 9 C 1.50693 * 119.99811 * 180.02562 * 7 2 1 10 10 C 1.53008 * 109.46984 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47219 * 179.97438 * 10 9 7 12 12 C 1.52995 * 109.47124 * 180.02562 * 11 10 9 13 13 N 1.46902 * 109.47050 * 180.02562 * 12 11 10 14 14 C 1.47488 * 111.00130 * 78.68718 * 13 12 11 15 15 C 1.53247 * 87.89140 * 139.48689 * 14 13 12 16 16 H 1.09002 * 116.02963 * 90.95714 * 15 14 13 17 17 C 1.53390 * 114.46233 * 228.56355 * 15 14 13 18 18 C 1.53509 * 107.40187 * 73.49590 * 17 15 14 19 19 C 1.53590 * 107.19273 * 359.26097 * 18 17 15 20 20 C 1.47664 * 110.99787 * 174.67250 * 13 12 11 21 21 H 1.08996 * 115.94099 * 102.40094 * 20 13 12 22 22 H 0.97004 * 119.99765 * 0.02562 * 1 2 3 23 23 H 1.08996 * 109.47266 * 60.00670 * 9 7 2 24 24 H 1.09000 * 109.47299 * 299.99931 * 9 7 2 25 25 H 1.09005 * 109.46463 * 60.00306 * 10 9 7 26 26 H 1.08995 * 109.47211 * 300.00529 * 10 9 7 27 27 H 1.09000 * 109.47236 * 300.00035 * 11 10 9 28 28 H 1.08998 * 109.47325 * 60.00143 * 11 10 9 29 29 H 1.09008 * 109.46878 * 300.00128 * 12 11 10 30 30 H 1.08999 * 109.47710 * 59.99969 * 12 11 10 31 31 H 1.08998 * 113.48043 * 254.23908 * 14 13 12 32 32 H 1.08998 * 113.48390 * 24.73000 * 14 13 12 33 33 H 1.09002 * 109.85687 * 192.94507 * 17 15 14 34 34 H 1.09001 * 109.86142 * 313.90596 * 17 15 14 35 35 H 1.08997 * 109.89751 * 118.65427 * 18 17 15 36 36 H 1.09001 * 109.89167 * 239.70656 * 18 17 15 37 37 H 1.09005 * 110.12481 * 136.96644 * 19 18 17 38 38 H 1.08994 * 110.12692 * 258.58218 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1939 0.0011 10 6 4.0216 -2.6365 0.0010 11 6 5.5516 -2.6365 0.0009 12 6 6.0616 -4.0789 0.0002 13 7 7.5306 -4.0789 0.0007 14 6 8.0587 -3.8096 1.3513 15 6 9.1255 -4.8771 1.0854 16 1 10.0589 -4.5222 0.6483 17 6 9.2875 -5.9073 2.2102 18 6 8.0697 -6.8404 2.1571 19 6 7.1731 -6.3517 1.0098 20 6 8.0597 -5.4516 0.1280 21 1 8.4275 -5.9079 -0.7909 22 1 -0.4850 0.8401 -0.0004 23 1 3.8745 -0.6800 0.8911 24 1 3.8752 -0.6803 -0.8888 25 1 3.6586 -3.1501 -0.8894 26 1 3.6579 -3.1506 0.8906 27 1 5.9149 -2.1226 -0.8890 28 1 5.9150 -2.1227 0.8909 29 1 5.6982 -4.5932 0.8900 30 1 5.6983 -4.5924 -0.8900 31 1 8.4677 -2.8058 1.4655 32 1 7.3663 -4.0769 2.1496 33 1 10.2011 -6.4819 2.0573 34 1 9.3261 -5.4000 3.1742 35 1 8.3940 -7.8630 1.9647 36 1 7.5263 -6.7950 3.1010 37 1 6.8080 -7.2005 0.4316 38 1 6.3342 -5.7802 1.4068 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687776839.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:03 Heat of formation + Delta-G solvation = -1.774277 kcal Electronic energy + Delta-G solvation = -15276.334780 eV Core-core repulsion = 12925.144686 eV Total energy + Delta-G solvation = -2351.190094 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.32055 -36.98267 -35.25324 -34.10105 -31.76606 -30.07786 -27.73314 -25.96015 -25.15723 -23.08766 -21.81456 -20.61989 -19.31195 -18.88287 -17.58884 -16.67332 -16.51463 -16.35363 -15.75177 -14.92906 -14.75601 -14.69155 -13.87564 -13.80494 -13.50041 -13.25676 -13.02111 -12.74342 -12.39665 -12.14889 -12.04142 -11.86368 -11.79378 -11.73007 -11.47199 -11.34640 -11.14996 -11.03713 -11.01055 -10.77933 -9.73310 -8.31269 -6.35490 1.34603 1.36179 1.48920 2.35131 2.98920 3.03950 3.34771 3.59793 3.87686 3.98083 4.14176 4.18269 4.29995 4.37098 4.45337 4.50867 4.56794 4.62157 4.71155 4.73632 4.82473 4.86287 5.03738 5.05031 5.09848 5.11267 5.16862 5.21781 5.28263 5.39911 5.45503 5.47266 5.54504 5.62197 5.66676 6.14458 6.27380 6.72368 7.29437 8.85729 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.055875 B = 0.004687 C = 0.004525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.000731 B = 5971.901509 C = 6186.444822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.003 3.997 3 Si 0.953 3.047 4 H -0.266 1.266 5 H -0.281 1.281 6 H -0.248 1.248 7 C -0.536 4.536 8 H 0.030 0.970 9 C -0.012 4.012 10 C -0.094 4.094 11 C -0.101 4.101 12 C 0.020 3.980 13 N -0.482 5.482 14 C 0.000 4.000 15 C -0.108 4.108 16 H 0.113 0.887 17 C -0.112 4.112 18 C -0.117 4.117 19 C -0.150 4.150 20 C 0.020 3.980 21 H 0.105 0.895 22 H 0.267 0.733 23 H 0.018 0.982 24 H 0.016 0.984 25 H 0.047 0.953 26 H 0.047 0.953 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.065 0.935 37 H 0.074 0.926 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.530 -12.004 4.037 24.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.194 4.194 3 Si 0.776 3.224 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.172 1.172 7 C -0.574 4.574 8 H 0.049 0.951 9 C -0.049 4.049 10 C -0.132 4.132 11 C -0.139 4.139 12 C -0.109 4.109 13 N -0.203 5.203 14 C -0.129 4.129 15 C -0.127 4.127 16 H 0.131 0.869 17 C -0.150 4.150 18 C -0.155 4.155 19 C -0.188 4.188 20 C -0.090 4.090 21 H 0.123 0.877 22 H 0.076 0.924 23 H 0.036 0.964 24 H 0.034 0.966 25 H 0.065 0.935 26 H 0.066 0.934 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.098 0.902 32 H 0.086 0.914 33 H 0.099 0.901 34 H 0.089 0.911 35 H 0.094 0.906 36 H 0.084 0.916 37 H 0.093 0.907 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 21.530 -11.466 3.451 24.636 hybrid contribution -0.964 0.327 0.463 1.118 sum 20.566 -11.139 3.914 23.714 Atomic orbital electron populations 1.70076 1.08304 1.28211 1.52711 1.26057 0.95660 1.03636 0.94031 0.85616 0.79414 0.78087 0.79280 1.19095 1.20674 1.17191 1.21547 0.92285 0.93113 1.50421 0.95128 1.19536 0.93754 0.95371 0.96289 1.21297 0.94491 0.96957 1.00465 1.21411 0.94371 0.96390 1.01736 1.22729 0.89622 0.96971 1.01538 1.69150 1.08816 1.16351 1.26006 1.23808 0.97216 1.00493 0.91374 1.23311 0.97216 0.95616 0.96520 0.86915 1.21846 0.98774 0.96170 0.98191 1.21943 0.95847 0.99939 0.97775 1.22597 0.98953 0.99739 0.97500 1.24198 0.95760 0.90070 0.98927 0.87677 0.92443 0.96396 0.96594 0.93456 0.93422 0.92271 0.92530 0.92547 0.91182 0.90214 0.91366 0.90129 0.91094 0.90569 0.91642 0.90733 0.91245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.26 13.96 21.45 0.30 -60.97 16 2 C 0.00 0.16 5.47 84.65 0.46 0.62 16 3 Si 0.95 45.65 27.47 68.60 1.88 47.53 16 4 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 5 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 6 H -0.25 -11.12 6.54 99.48 0.65 -10.47 16 7 C -0.54 -32.20 9.66 25.60 0.25 -31.96 16 8 H 0.03 2.01 7.99 -2.91 -0.02 1.99 16 9 C -0.01 -0.59 4.04 29.85 0.12 -0.47 16 10 C -0.09 -3.82 5.15 30.60 0.16 -3.67 16 11 C -0.10 -3.34 5.37 30.59 0.16 -3.18 16 12 C 0.02 0.54 4.38 86.30 0.38 0.92 16 13 N -0.48 -12.01 6.38 -897.25 -5.72 -17.73 16 14 C 0.00 0.00 6.51 83.63 0.54 0.54 16 15 C -0.11 -1.83 5.19 -10.12 -0.05 -1.88 16 16 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 17 C -0.11 -1.49 6.33 30.90 0.20 -1.30 16 18 C -0.12 -1.66 6.72 30.96 0.21 -1.45 16 19 C -0.15 -2.69 5.38 31.16 0.17 -2.52 16 20 C 0.02 0.39 5.24 42.95 0.22 0.61 16 21 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 22 H 0.27 15.92 8.31 -92.71 -0.77 15.15 16 23 H 0.02 0.86 7.20 -2.39 -0.02 0.84 16 24 H 0.02 0.76 7.57 -2.39 -0.02 0.74 16 25 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 26 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 27 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 28 H 0.06 1.83 7.84 -2.39 -0.02 1.81 16 29 H 0.06 1.51 4.96 -2.38 -0.01 1.49 16 30 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.07 1.49 6.76 -2.39 -0.02 1.47 16 33 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 38 H 0.07 1.46 4.54 -2.39 -0.01 1.45 16 Total: -1.00 -66.58 290.87 0.23 -66.35 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: 0.94 Total: 8.53 kcal Atomic # 6 Polarization: -46.54 SS G_CDS: 2.82 Total: -43.72 kcal Atomic # 7 Polarization: -73.27 SS G_CDS: -5.42 Total: -78.69 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 1.88 Total: 47.53 kcal Total: -66.58 0.23 -66.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687776839.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.577 kcal (2) G-P(sol) polarization free energy of solvation -66.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds