Wall clock time and date at job start Mon Mar 30 2020 02:53:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 120.00066 * 2 1 4 4 H 1.48499 * 109.46989 * 270.00213 * 3 2 1 5 5 H 1.48491 * 109.47001 * 30.00166 * 3 2 1 6 6 H 1.48498 * 109.47129 * 150.00573 * 3 2 1 7 7 C 1.37882 * 119.99864 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99622 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00309 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47302 * 180.02562 * 9 7 2 11 11 N 1.46902 * 109.47182 * 180.02562 * 10 9 7 12 12 C 1.47536 * 111.00257 * 91.52492 * 11 10 9 13 13 C 1.53555 * 87.98974 * 138.42586 * 12 11 10 14 14 C 1.47155 * 111.00185 * 187.41040 * 11 10 9 15 15 C 1.52844 * 113.47594 * 106.67683 * 14 11 10 16 16 C 1.53124 * 109.22457 * 172.71530 * 15 14 11 17 17 C 1.52961 * 109.44685 * 57.99603 * 16 15 14 18 18 C 1.52974 * 109.68776 * 298.37788 * 17 16 15 19 19 C 1.52839 * 113.46525 * 336.35509 * 14 11 10 20 20 H 0.96998 * 120.00192 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.47179 * 60.00433 * 9 7 2 22 22 H 1.09004 * 109.47312 * 300.00728 * 9 7 2 23 23 H 1.08992 * 109.47119 * 60.00409 * 10 9 7 24 24 H 1.09001 * 109.46822 * 299.99634 * 10 9 7 25 25 H 1.09004 * 113.46602 * 253.21018 * 12 11 10 26 26 H 1.08997 * 113.46277 * 23.64420 * 12 11 10 27 27 H 1.09004 * 114.18222 * 87.85153 * 13 12 11 28 28 H 1.08998 * 114.18157 * 220.39820 * 13 12 11 29 29 H 1.09001 * 109.51134 * 292.64244 * 15 14 11 30 30 H 1.08997 * 109.51093 * 52.78786 * 15 14 11 31 31 H 1.09004 * 109.47501 * 298.00413 * 16 15 14 32 32 H 1.08999 * 109.47353 * 177.99122 * 16 15 14 33 33 H 1.09001 * 109.43813 * 178.30746 * 17 16 15 34 34 H 1.09003 * 109.43532 * 58.44202 * 17 16 15 35 35 H 1.09001 * 109.47677 * 301.63061 * 18 17 16 36 36 H 1.08997 * 109.47791 * 181.61517 * 18 17 16 37 37 H 1.08994 * 109.51659 * 307.21901 * 19 14 11 38 38 H 1.09003 * 109.51488 * 67.36864 * 19 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5108 -4.9343 -0.0012 12 6 1.2786 -5.4102 -1.3782 13 6 1.6232 -6.8246 -0.8898 14 6 2.4268 -6.0723 0.1760 15 6 2.3438 -6.7107 1.5623 16 6 3.1935 -7.9844 1.5825 17 6 4.6381 -7.6387 1.2173 18 6 4.6873 -7.0586 -0.1973 19 6 3.8634 -5.7689 -0.2484 20 1 -0.4850 0.8400 0.0004 21 1 0.6241 -2.5568 -0.8903 22 1 0.6246 -2.5571 0.8896 23 1 2.8718 -3.6044 0.8894 24 1 2.8719 -3.6043 -0.8906 25 1 0.2444 -5.3039 -1.7056 26 1 1.9927 -5.0143 -2.1004 27 1 0.7721 -7.3812 -0.4973 28 1 2.2307 -7.4020 -1.5867 29 1 2.7193 -6.0106 2.3086 30 1 1.3069 -6.9611 1.7862 31 1 2.7966 -8.6975 0.8599 32 1 3.1659 -8.4238 2.5796 33 1 5.2490 -8.5404 1.2610 34 1 5.0251 -6.9046 1.9240 35 1 4.2747 -7.7814 -0.9012 36 1 5.7211 -6.8403 -0.4648 37 1 3.8674 -5.3743 -1.2644 38 1 4.2960 -5.0336 0.4302 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687802335.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:25 Heat of formation + Delta-G solvation = -12.934148 kcal Electronic energy + Delta-G solvation = -15939.905248 eV Core-core repulsion = 13588.231226 eV Total energy + Delta-G solvation = -2351.674022 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.10856 -37.26852 -35.50656 -33.01242 -31.76215 -29.63506 -29.10632 -25.75038 -24.26036 -23.51822 -22.19000 -21.46374 -18.89083 -18.49130 -16.94942 -16.65177 -16.50590 -16.05158 -15.46742 -14.78052 -14.62189 -14.38832 -14.10783 -13.61577 -13.49229 -13.19162 -12.92512 -12.85427 -12.62119 -12.46531 -12.23406 -12.00796 -11.70136 -11.65595 -11.49696 -11.43616 -11.22295 -10.88975 -10.74585 -10.57604 -9.57351 -8.23046 -6.35948 1.36923 1.39399 1.50572 2.37646 3.09484 3.11024 3.50915 3.73113 3.95586 4.10931 4.17444 4.26409 4.32080 4.38230 4.47013 4.53891 4.61502 4.67332 4.72986 4.81344 4.88189 4.94951 5.03744 5.09786 5.11895 5.23524 5.26461 5.27790 5.35292 5.41653 5.48320 5.53542 5.59781 5.78469 5.80884 6.16559 6.34842 6.81121 7.33631 8.89372 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.042478 B = 0.006221 C = 0.005896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.006813 B = 4499.938475 C = 4747.486838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.970 3.030 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.263 1.263 7 C -0.547 4.547 8 H 0.059 0.941 9 C 0.041 3.959 10 C 0.054 3.946 11 N -0.494 5.494 12 C -0.008 4.008 13 C -0.114 4.114 14 C 0.054 3.946 15 C -0.094 4.094 16 C -0.108 4.108 17 C -0.119 4.119 18 C -0.107 4.107 19 C -0.121 4.121 20 H 0.264 0.736 21 H -0.015 1.015 22 H -0.015 1.015 23 H 0.051 0.949 24 H 0.035 0.965 25 H 0.069 0.931 26 H 0.064 0.936 27 H 0.096 0.904 28 H 0.096 0.904 29 H 0.041 0.959 30 H 0.061 0.939 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.050 0.950 35 H 0.076 0.924 36 H 0.069 0.931 37 H 0.057 0.943 38 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.839 -17.210 -0.574 19.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.793 3.207 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.187 1.187 7 C -0.585 4.585 8 H 0.078 0.922 9 C 0.003 3.997 10 C -0.074 4.074 11 N -0.215 5.215 12 C -0.137 4.137 13 C -0.152 4.152 14 C -0.036 4.036 15 C -0.132 4.132 16 C -0.146 4.146 17 C -0.156 4.156 18 C -0.145 4.145 19 C -0.160 4.160 20 H 0.073 0.927 21 H 0.003 0.997 22 H 0.004 0.996 23 H 0.069 0.931 24 H 0.053 0.947 25 H 0.088 0.912 26 H 0.082 0.918 27 H 0.114 0.886 28 H 0.115 0.885 29 H 0.060 0.940 30 H 0.080 0.920 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.099 0.901 34 H 0.069 0.931 35 H 0.094 0.906 36 H 0.088 0.912 37 H 0.076 0.924 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 8.127 -16.943 -0.095 18.791 hybrid contribution 0.527 1.527 -0.453 1.677 sum 8.654 -15.416 -0.548 17.687 Atomic orbital electron populations 1.70124 1.07973 1.27870 1.51313 1.26029 0.95783 1.03526 0.94461 0.85385 0.78594 0.78041 0.78651 1.19487 1.20518 1.18675 1.21624 0.93435 0.92289 1.51142 0.92233 1.18799 0.94132 0.92347 0.94379 1.22362 0.95638 0.90460 0.98955 1.68950 1.32301 1.01240 1.19035 1.23787 1.01658 0.96653 0.91554 1.23148 1.00063 0.94662 0.97289 1.22598 0.92103 0.91915 0.96979 1.21345 1.00338 0.97107 0.94376 1.21477 0.94759 0.96094 1.02253 1.21528 0.96815 1.01017 0.96243 1.21474 0.99498 0.95595 0.97937 1.21771 0.94429 0.99167 1.00613 0.92678 0.99679 0.99631 0.93065 0.94681 0.91212 0.91782 0.88576 0.88528 0.94038 0.92010 0.90665 0.90979 0.90089 0.93113 0.90560 0.91206 0.92446 0.93064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.14 13.29 21.45 0.28 -58.86 16 2 C 0.00 -0.01 5.46 84.66 0.46 0.46 16 3 Si 0.97 45.50 29.54 68.60 2.03 47.52 16 4 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 5 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 6 H -0.26 -11.74 7.11 99.48 0.71 -11.04 16 7 C -0.55 -32.72 9.11 25.60 0.23 -32.49 16 8 H 0.06 3.40 7.74 -2.91 -0.02 3.37 16 9 C 0.04 2.35 5.29 29.85 0.16 2.51 16 10 C 0.05 2.46 3.74 86.30 0.32 2.78 16 11 N -0.49 -19.23 6.12 -882.26 -5.40 -24.63 16 12 C -0.01 -0.25 7.37 83.26 0.61 0.37 16 13 C -0.11 -2.83 7.12 30.86 0.22 -2.61 16 14 C 0.05 1.58 0.73 0.34 0.00 1.58 16 15 C -0.09 -2.48 5.39 30.58 0.16 -2.32 16 16 C -0.11 -2.03 5.84 30.62 0.18 -1.85 16 17 C -0.12 -2.12 5.87 30.57 0.18 -1.94 16 18 C -0.11 -2.06 5.83 30.63 0.18 -1.88 16 19 C -0.12 -3.25 3.71 30.58 0.11 -3.14 16 20 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 21 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 22 H -0.01 -0.94 8.14 -2.38 -0.02 -0.96 16 23 H 0.05 2.34 7.38 -2.39 -0.02 2.33 16 24 H 0.03 1.54 6.20 -2.39 -0.01 1.53 16 25 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 26 H 0.06 2.11 6.62 -2.39 -0.02 2.09 16 27 H 0.10 2.24 8.10 -2.38 -0.02 2.22 16 28 H 0.10 1.88 7.36 -2.39 -0.02 1.86 16 29 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.06 1.69 8.12 -2.39 -0.02 1.67 16 31 H 0.07 1.23 7.94 -2.38 -0.02 1.21 16 32 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.08 1.26 7.35 -2.39 -0.02 1.24 16 36 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.06 1.61 6.37 -2.39 -0.02 1.59 16 38 H 0.05 1.56 7.10 -2.39 -0.02 1.55 16 Total: -1.00 -68.09 289.47 0.73 -67.36 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: 1.00 Total: 7.14 kcal Atomic # 6 Polarization: -41.35 SS G_CDS: 2.83 Total: -38.53 kcal Atomic # 7 Polarization: -78.37 SS G_CDS: -5.12 Total: -83.49 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.52 kcal Total: -68.09 0.73 -67.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687802335.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.422 kcal (2) G-P(sol) polarization free energy of solvation -68.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds