Wall clock time and date at job start Mon Mar 30 2020 02:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46908 * 111.00059 * 2 1 4 4 C 1.53002 * 109.47044 * 293.95606 * 3 2 1 5 5 C 1.52997 * 109.47241 * 179.97438 * 4 3 2 6 6 C 1.50690 * 109.47522 * 180.02562 * 5 4 3 7 7 H 1.08001 * 119.99826 * 359.97438 * 6 5 4 8 8 C 1.37880 * 120.00479 * 180.02562 * 6 5 4 9 9 N 1.31512 * 119.99406 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00130 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47203 * 89.99860 * 10 8 6 12 12 H 1.48503 * 109.47000 * 209.99728 * 10 8 6 13 13 H 1.48503 * 109.47181 * 329.99755 * 10 8 6 14 14 C 1.39205 * 111.00637 * 123.95620 * 2 1 3 15 15 C 1.36174 * 126.21706 * 298.84284 * 14 2 1 16 16 C 1.39775 * 107.81196 * 179.84042 * 15 14 2 17 17 N 1.30837 * 108.32253 * 0.42352 * 16 15 14 18 18 N 1.35247 * 126.22562 * 119.14803 * 14 2 1 19 19 C 1.46504 * 126.03764 * 0.02562 * 18 14 2 20 20 H 1.08999 * 109.47482 * 65.56235 * 1 2 3 21 21 H 1.08996 * 109.47007 * 185.56659 * 1 2 3 22 22 H 1.09004 * 109.46668 * 305.56318 * 1 2 3 23 23 H 1.08998 * 109.46948 * 53.95425 * 3 2 1 24 24 H 1.08994 * 109.46972 * 173.95575 * 3 2 1 25 25 H 1.08993 * 109.47311 * 300.00166 * 4 3 2 26 26 H 1.09003 * 109.46681 * 60.00153 * 4 3 2 27 27 H 1.09009 * 109.46903 * 300.00382 * 5 4 3 28 28 H 1.08995 * 109.47204 * 59.99657 * 5 4 3 29 29 H 0.96997 * 119.99579 * 179.97438 * 9 8 6 30 30 H 1.07999 * 126.09583 * 359.97438 * 15 14 2 31 31 H 1.07996 * 125.83880 * 180.16273 * 16 15 14 32 32 H 1.08994 * 109.47100 * 93.41095 * 19 18 14 33 33 H 1.09001 * 109.46550 * 213.41566 * 19 18 14 34 34 H 1.09000 * 109.47336 * 333.41111 * 19 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6314 2.0575 -1.3183 5 6 2.1792 3.4861 -1.3180 6 6 1.8201 4.1620 -2.6161 7 1 1.2578 3.6261 -3.3665 8 6 2.2103 5.4642 -2.8464 9 7 2.8954 6.1166 -1.9328 10 14 1.7658 6.3018 -4.4558 11 1 0.4535 6.9822 -4.3138 12 1 2.8081 7.3031 -4.7971 13 1 1.6825 5.2861 -5.5359 14 6 1.9680 -0.7259 1.0779 15 6 1.7617 -0.4533 2.3960 16 6 2.4328 -1.4250 3.1438 17 7 3.0271 -2.2442 2.3146 18 7 2.7506 -1.8266 1.0066 19 6 3.2255 -2.4684 -0.2218 20 1 -0.3634 0.4251 -0.9356 21 1 -0.3633 -1.0228 0.0997 22 1 -0.3633 0.5977 0.8360 23 1 1.5612 1.9274 0.8309 24 1 3.0797 1.3444 0.1082 25 1 2.0657 1.5017 -2.1492 26 1 0.5471 2.0845 -1.4264 27 1 1.7445 4.0417 -0.4870 28 1 3.2634 3.4595 -1.2096 29 1 3.1703 7.0326 -2.0949 30 1 1.1810 0.3662 2.7930 31 1 2.4600 -1.4864 4.2216 32 1 4.2090 -2.0758 -0.4800 33 1 3.2934 -3.5451 -0.0663 34 1 2.5275 -2.2617 -1.0330 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687802570.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:05 Heat of formation + Delta-G solvation = 76.424527 kcal Electronic energy + Delta-G solvation = -14967.064147 eV Core-core repulsion = 12515.724665 eV Total energy + Delta-G solvation = -2451.339482 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.23424 -37.34982 -33.72107 -33.08586 -31.46591 -28.96879 -27.18837 -26.70400 -25.21345 -22.70611 -21.10822 -20.00798 -19.56456 -17.11607 -16.34369 -15.57790 -15.21892 -14.66009 -14.41837 -14.18784 -13.76587 -13.45006 -13.11529 -12.57382 -12.36091 -12.29506 -11.92071 -11.71264 -11.32608 -10.88346 -10.74653 -10.59495 -10.51069 -9.69981 -9.49043 -9.18967 -9.07207 -8.55109 -8.42589 -8.35848 -6.01093 -4.03544 1.87196 2.47088 2.84514 3.31287 3.37675 3.40938 3.96755 4.45625 4.65819 5.14659 5.25090 5.28522 5.34881 5.46496 5.51185 5.61534 5.67642 5.69178 5.81538 5.96040 6.08990 6.19426 6.51692 6.54690 6.69578 6.80908 7.02062 7.13958 7.44288 7.65624 7.79044 7.82582 7.98593 8.41033 9.03476 9.60643 11.10367 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.050866 B = 0.005001 C = 0.004929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.336967 B = 5597.632041 C = 5679.455163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.501 5.501 3 C 0.069 3.931 4 C -0.104 4.104 5 C 0.022 3.978 6 C -0.519 4.519 7 H 0.055 0.945 8 C 0.056 3.944 9 N -0.896 5.896 10 Si 0.892 3.108 11 H -0.281 1.281 12 H -0.287 1.287 13 H -0.274 1.274 14 C 0.271 3.729 15 C -0.304 4.304 16 C 0.051 3.949 17 N -0.301 5.301 18 N -0.360 5.360 19 C 0.105 3.895 20 H 0.084 0.916 21 H 0.061 0.939 22 H 0.037 0.963 23 H 0.042 0.958 24 H 0.070 0.930 25 H 0.056 0.944 26 H 0.051 0.949 27 H 0.015 0.985 28 H 0.016 0.984 29 H 0.260 0.740 30 H 0.144 0.856 31 H 0.181 0.819 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.821 -14.268 5.926 15.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.224 5.224 3 C -0.056 4.056 4 C -0.143 4.143 5 C -0.015 4.015 6 C -0.558 4.558 7 H 0.074 0.926 8 C -0.145 4.145 9 N -0.535 5.535 10 Si 0.720 3.280 11 H -0.207 1.207 12 H -0.212 1.212 13 H -0.199 1.199 14 C 0.049 3.951 15 C -0.335 4.335 16 C -0.134 4.134 17 N -0.124 5.124 18 N -0.143 5.143 19 C -0.037 4.037 20 H 0.103 0.897 21 H 0.080 0.920 22 H 0.056 0.944 23 H 0.060 0.940 24 H 0.088 0.912 25 H 0.075 0.925 26 H 0.070 0.930 27 H 0.034 0.966 28 H 0.034 0.966 29 H 0.070 0.930 30 H 0.162 0.838 31 H 0.198 0.802 32 H 0.091 0.909 33 H 0.100 0.900 34 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -1.789 -15.436 5.271 16.409 hybrid contribution -0.901 1.694 -0.071 1.920 sum -2.690 -13.741 5.200 14.936 Atomic orbital electron populations 1.22402 0.84560 1.01491 1.02489 1.58731 1.09050 1.15788 1.38861 1.22414 0.99696 0.83522 1.00010 1.21690 1.00394 0.98338 0.93833 1.19066 0.96301 0.89001 0.97180 1.21218 1.34921 0.97610 1.02025 0.92641 1.25026 0.95170 0.97512 0.96750 1.69964 1.38205 1.11299 1.34033 0.86595 0.78099 0.79348 0.83965 1.20670 1.21234 1.19858 1.19236 0.94957 0.89831 0.91097 1.21612 1.13348 1.06223 0.92355 1.23610 0.96498 0.93502 0.99773 1.77357 1.24701 1.23903 0.86418 1.48620 1.38435 1.21306 1.05929 1.21806 1.01008 0.98102 0.82742 0.89694 0.91987 0.94448 0.93967 0.91157 0.92510 0.93036 0.96645 0.96579 0.92993 0.83797 0.80224 0.90880 0.90034 0.88718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.49 8.98 60.06 0.54 1.03 16 2 N -0.50 -7.57 4.64 -181.09 -0.84 -8.41 16 3 C 0.07 1.20 4.71 -3.82 -0.02 1.18 16 4 C -0.10 -2.09 5.07 -26.73 -0.14 -2.23 16 5 C 0.02 0.56 4.97 -27.89 -0.14 0.43 16 6 C -0.52 -14.56 9.11 -34.44 -0.31 -14.87 16 7 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 8 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 9 N -0.90 -26.85 13.29 55.43 0.74 -26.12 16 10 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 12 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 13 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 14 C 0.27 4.08 5.54 -153.41 -0.85 3.23 16 15 C -0.30 -4.29 10.20 -39.75 -0.41 -4.69 16 16 C 0.05 0.67 12.01 -17.40 -0.21 0.46 16 17 N -0.30 -4.49 12.56 30.60 0.38 -4.11 16 18 N -0.36 -5.25 4.02 -67.24 -0.27 -5.52 16 19 C 0.10 1.17 11.42 59.85 0.68 1.85 16 20 H 0.08 1.10 6.74 -51.93 -0.35 0.75 16 21 H 0.06 0.73 8.06 -51.93 -0.42 0.31 16 22 H 0.04 0.47 8.02 -51.93 -0.42 0.06 16 23 H 0.04 0.73 8.04 -51.93 -0.42 0.31 16 24 H 0.07 1.28 8.06 -51.93 -0.42 0.86 16 25 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 26 H 0.05 0.99 6.68 -51.93 -0.35 0.65 16 27 H 0.02 0.41 8.14 -51.92 -0.42 -0.01 16 28 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 30 H 0.14 1.86 8.06 -52.49 -0.42 1.44 16 31 H 0.18 1.70 8.06 -52.49 -0.42 1.28 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.09 0.99 8.02 -51.93 -0.42 0.57 16 LS Contribution 289.33 15.07 4.36 4.36 Total: -1.00 -31.53 289.33 -6.88 -38.41 By element: Atomic # 1 Polarization: 2.28 SS G_CDS: -5.29 Total: -3.00 kcal Atomic # 6 Polarization: -11.15 SS G_CDS: -0.94 Total: -12.09 kcal Atomic # 7 Polarization: -44.17 SS G_CDS: 0.01 Total: -44.16 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -31.53 -6.88 -38.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687802570.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.836 kcal (2) G-P(sol) polarization free energy of solvation -31.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds