Wall clock time and date at job start Mon Mar 30 2020 02:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46908 * 111.00059 * 2 1 4 4 C 1.53002 * 109.47044 * 293.95606 * 3 2 1 5 5 C 1.52997 * 109.47241 * 179.97438 * 4 3 2 6 6 C 1.50690 * 109.47522 * 180.02562 * 5 4 3 7 7 H 1.08001 * 119.99826 * 359.97438 * 6 5 4 8 8 C 1.37880 * 120.00479 * 180.02562 * 6 5 4 9 9 N 1.31512 * 119.99406 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00130 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47203 * 89.99860 * 10 8 6 12 12 H 1.48503 * 109.47000 * 209.99728 * 10 8 6 13 13 H 1.48503 * 109.47181 * 329.99755 * 10 8 6 14 14 C 1.39205 * 111.00637 * 123.95620 * 2 1 3 15 15 C 1.36174 * 126.21706 * 298.84284 * 14 2 1 16 16 C 1.39775 * 107.81196 * 179.84042 * 15 14 2 17 17 N 1.30837 * 108.32253 * 0.42352 * 16 15 14 18 18 N 1.35247 * 126.22562 * 119.14803 * 14 2 1 19 19 C 1.46504 * 126.03764 * 0.02562 * 18 14 2 20 20 H 1.08999 * 109.47482 * 65.56235 * 1 2 3 21 21 H 1.08996 * 109.47007 * 185.56659 * 1 2 3 22 22 H 1.09004 * 109.46668 * 305.56318 * 1 2 3 23 23 H 1.08998 * 109.46948 * 53.95425 * 3 2 1 24 24 H 1.08994 * 109.46972 * 173.95575 * 3 2 1 25 25 H 1.08993 * 109.47311 * 300.00166 * 4 3 2 26 26 H 1.09003 * 109.46681 * 60.00153 * 4 3 2 27 27 H 1.09009 * 109.46903 * 300.00382 * 5 4 3 28 28 H 1.08995 * 109.47204 * 59.99657 * 5 4 3 29 29 H 0.96997 * 119.99579 * 179.97438 * 9 8 6 30 30 H 1.07999 * 126.09583 * 359.97438 * 15 14 2 31 31 H 1.07996 * 125.83880 * 180.16273 * 16 15 14 32 32 H 1.08994 * 109.47100 * 93.41095 * 19 18 14 33 33 H 1.09001 * 109.46550 * 213.41566 * 19 18 14 34 34 H 1.09000 * 109.47336 * 333.41111 * 19 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6314 2.0575 -1.3183 5 6 2.1792 3.4861 -1.3180 6 6 1.8201 4.1620 -2.6161 7 1 1.2578 3.6261 -3.3665 8 6 2.2103 5.4642 -2.8464 9 7 2.8954 6.1166 -1.9328 10 14 1.7658 6.3018 -4.4558 11 1 0.4535 6.9822 -4.3138 12 1 2.8081 7.3031 -4.7971 13 1 1.6825 5.2861 -5.5359 14 6 1.9680 -0.7259 1.0779 15 6 1.7617 -0.4533 2.3960 16 6 2.4328 -1.4250 3.1438 17 7 3.0271 -2.2442 2.3146 18 7 2.7506 -1.8266 1.0066 19 6 3.2255 -2.4684 -0.2218 20 1 -0.3634 0.4251 -0.9356 21 1 -0.3633 -1.0228 0.0997 22 1 -0.3633 0.5977 0.8360 23 1 1.5612 1.9274 0.8309 24 1 3.0797 1.3444 0.1082 25 1 2.0657 1.5017 -2.1492 26 1 0.5471 2.0845 -1.4264 27 1 1.7445 4.0417 -0.4870 28 1 3.2634 3.4595 -1.2096 29 1 3.1703 7.0326 -2.0949 30 1 1.1810 0.3662 2.7930 31 1 2.4600 -1.4864 4.2216 32 1 4.2090 -2.0758 -0.4800 33 1 3.2934 -3.5451 -0.0663 34 1 2.5275 -2.2617 -1.0330 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687802570.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:04 Heat of formation + Delta-G solvation = 56.779128 kcal Electronic energy + Delta-G solvation = -14967.916035 eV Core-core repulsion = 12515.724665 eV Total energy + Delta-G solvation = -2452.191371 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.30869 -38.62200 -35.66273 -34.10155 -33.32458 -30.15421 -28.79902 -27.67303 -26.67218 -24.43054 -22.29764 -21.55793 -20.71626 -18.51464 -18.16241 -16.77438 -16.55725 -16.42277 -15.74277 -15.37676 -14.99733 -14.55615 -14.34963 -14.23788 -13.67592 -13.49875 -13.22672 -13.18604 -12.82146 -12.65191 -12.46529 -12.36752 -11.72640 -11.47479 -11.41878 -11.16874 -10.53631 -10.24180 -9.75270 -9.51882 -8.18690 -6.29543 0.77039 1.42047 1.43234 1.45872 1.54434 1.80295 2.42390 2.82738 3.15106 3.71318 4.00057 4.15343 4.33653 4.39572 4.45842 4.53327 4.61081 4.64407 4.66990 4.70860 4.85176 4.96682 5.00495 5.04254 5.24680 5.51265 5.58577 5.69863 5.72341 5.82162 5.86892 6.25739 6.32811 6.75804 6.87670 7.39944 8.93359 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.050866 B = 0.005001 C = 0.004929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.336967 B = 5597.632041 C = 5679.455163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.499 5.499 3 C 0.084 3.916 4 C -0.087 4.087 5 C 0.025 3.975 6 C -0.540 4.540 7 H 0.062 0.938 8 C -0.001 4.001 9 N -0.935 5.935 10 Si 0.965 3.035 11 H -0.272 1.272 12 H -0.284 1.284 13 H -0.262 1.262 14 C 0.253 3.747 15 C -0.311 4.311 16 C 0.053 3.947 17 N -0.322 5.322 18 N -0.368 5.368 19 C 0.099 3.901 20 H 0.086 0.914 21 H 0.076 0.924 22 H 0.041 0.959 23 H 0.041 0.959 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.062 0.938 27 H -0.007 1.007 28 H -0.011 1.011 29 H 0.263 0.737 30 H 0.153 0.847 31 H 0.214 0.786 32 H 0.075 0.925 33 H 0.099 0.901 34 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.696 -15.044 5.457 16.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.222 5.222 3 C -0.042 4.042 4 C -0.125 4.125 5 C -0.013 4.013 6 C -0.578 4.578 7 H 0.080 0.920 8 C -0.198 4.198 9 N -0.575 5.575 10 Si 0.789 3.211 11 H -0.197 1.197 12 H -0.210 1.210 13 H -0.187 1.187 14 C 0.030 3.970 15 C -0.343 4.343 16 C -0.131 4.131 17 N -0.145 5.145 18 N -0.151 5.151 19 C -0.042 4.042 20 H 0.104 0.896 21 H 0.095 0.905 22 H 0.060 0.940 23 H 0.059 0.941 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.081 0.919 27 H 0.011 0.989 28 H 0.007 0.993 29 H 0.072 0.928 30 H 0.170 0.830 31 H 0.231 0.769 32 H 0.094 0.906 33 H 0.118 0.882 34 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -2.672 -16.241 4.796 17.144 hybrid contribution -0.616 1.906 0.129 2.007 sum -3.288 -14.335 4.925 15.510 Atomic orbital electron populations 1.22474 0.83173 1.02592 1.02722 1.58597 1.10205 1.14089 1.39351 1.22067 0.98940 0.84940 0.98300 1.21399 1.00603 0.95123 0.95356 1.18965 0.94589 0.92082 0.95622 1.21675 1.34894 0.98223 1.03015 0.91952 1.25978 0.94943 0.98368 1.00557 1.70100 1.39374 1.11754 1.36291 0.85453 0.77984 0.78244 0.79408 1.19708 1.20963 1.18656 1.19362 0.95795 0.90432 0.91363 1.21858 1.13474 1.06656 0.92285 1.24169 0.95234 0.92445 1.01241 1.77327 1.25453 1.24858 0.86875 1.48890 1.38270 1.21371 1.06587 1.22013 1.01154 0.99100 0.81886 0.89555 0.90503 0.94035 0.94061 0.92505 0.92578 0.91943 0.98868 0.99287 0.92824 0.82975 0.76942 0.90641 0.88235 0.88215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.90 8.98 127.69 1.15 2.05 16 2 N -0.50 -14.50 4.64 -726.83 -3.37 -17.87 16 3 C 0.08 2.89 4.71 86.30 0.41 3.30 16 4 C -0.09 -3.45 5.07 30.59 0.16 -3.29 16 5 C 0.03 1.31 4.97 29.84 0.15 1.45 16 6 C -0.54 -30.36 9.11 25.60 0.23 -30.12 16 7 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 8 C 0.00 -0.05 5.46 84.66 0.46 0.41 16 9 N -0.93 -56.82 13.29 21.45 0.28 -56.53 16 10 Si 0.96 43.83 29.54 68.60 2.03 45.85 16 11 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 12 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 13 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 14 C 0.25 7.30 5.54 131.43 0.73 8.03 16 15 C -0.31 -8.32 10.20 22.16 0.23 -8.09 16 16 C 0.05 1.31 12.01 85.21 1.02 2.33 16 17 N -0.32 -9.14 12.56 -57.09 -0.72 -9.85 16 18 N -0.37 -10.27 4.02 -366.65 -1.47 -11.74 16 19 C 0.10 2.07 11.42 127.77 1.46 3.53 16 20 H 0.09 2.07 6.74 -2.39 -0.02 2.05 16 21 H 0.08 1.65 8.06 -2.39 -0.02 1.63 16 22 H 0.04 0.98 8.02 -2.39 -0.02 0.96 16 23 H 0.04 1.42 8.04 -2.39 -0.02 1.40 16 24 H 0.06 2.09 8.06 -2.39 -0.02 2.07 16 25 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 26 H 0.06 2.34 6.68 -2.39 -0.02 2.32 16 27 H -0.01 -0.40 8.14 -2.38 -0.02 -0.41 16 28 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 29 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 30 H 0.15 3.71 8.06 -2.91 -0.02 3.68 16 31 H 0.21 3.45 8.06 -2.91 -0.02 3.43 16 32 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.10 1.96 8.02 -2.39 -0.02 1.94 16 Total: -1.00 -66.81 289.33 3.79 -63.02 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: 1.06 Total: 7.53 kcal Atomic # 6 Polarization: -26.39 SS G_CDS: 5.99 Total: -20.40 kcal Atomic # 7 Polarization: -90.72 SS G_CDS: -5.28 Total: -96.00 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.85 kcal Total: -66.81 3.79 -63.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687802570.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.800 kcal (2) G-P(sol) polarization free energy of solvation -66.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds