Wall clock time and date at job start Mon Mar 30 2020 02:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46497 * 109.47730 * 2 1 4 4 C 1.36945 * 119.99761 * 270.32885 * 3 2 1 5 5 H 1.08001 * 120.00030 * 326.14090 * 4 3 2 6 6 C 1.38813 * 119.99954 * 146.14322 * 4 3 2 7 7 N 1.31624 * 119.99741 * 336.89932 * 6 4 3 8 8 Si 1.86794 * 120.00231 * 156.90119 * 6 4 3 9 9 H 1.48502 * 109.47166 * 89.99563 * 8 6 4 10 10 H 1.48503 * 109.47155 * 210.00142 * 8 6 4 11 11 H 1.48502 * 109.47103 * 330.00049 * 8 6 4 12 12 C 1.46496 * 120.00225 * 90.32587 * 3 2 1 13 13 C 1.52997 * 109.47395 * 90.00097 * 12 3 2 14 14 C 1.52991 * 109.47275 * 179.97438 * 13 12 3 15 15 C 1.50707 * 109.47383 * 180.02562 * 14 13 12 16 16 C 1.39867 * 126.03583 * 270.00529 * 15 14 13 17 17 N 1.30844 * 108.19771 * 179.73513 * 16 15 14 18 18 N 1.40087 * 108.20318 * 0.40470 * 17 16 15 19 19 H 0.97004 * 126.03084 * 179.85308 * 18 17 16 20 20 C 1.34937 * 107.92605 * 359.58814 * 18 17 16 21 21 H 1.09002 * 109.46914 * 300.00260 * 1 2 3 22 22 H 1.08996 * 109.47074 * 59.99697 * 1 2 3 23 23 H 1.08996 * 109.47527 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.46914 * 239.99740 * 2 1 3 25 25 H 1.09001 * 109.47491 * 120.00169 * 2 1 3 26 26 H 0.97001 * 119.99924 * 179.97438 * 7 6 4 27 27 H 1.09002 * 109.47197 * 329.99935 * 12 3 2 28 28 H 1.09007 * 109.47159 * 210.00750 * 12 3 2 29 29 H 1.09008 * 109.46853 * 60.00088 * 13 12 3 30 30 H 1.08997 * 109.47049 * 300.00714 * 13 12 3 31 31 H 1.08998 * 109.47575 * 60.00260 * 14 13 12 32 32 H 1.09006 * 109.47544 * 300.00177 * 14 13 12 33 33 H 1.07998 * 125.90689 * 359.97438 * 16 15 14 34 34 H 1.08000 * 126.12631 * 180.22164 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2403 2.0289 -1.1860 5 1 2.5927 1.4772 -2.0450 6 6 2.0123 3.3947 -1.2841 7 7 1.1859 3.9857 -0.4473 8 14 2.8783 4.3937 -2.6036 9 1 2.0453 4.4179 -3.8328 10 1 3.0846 5.7819 -2.1180 11 1 4.1935 3.7757 -2.9092 12 6 2.2695 2.0693 1.2686 13 6 3.7168 1.8280 1.7021 14 6 3.9791 2.5473 3.0267 15 6 5.4049 2.3101 3.4534 16 6 5.8603 1.2562 4.2523 17 7 7.1540 1.3846 4.3997 18 7 7.5618 2.5312 3.7059 19 1 8.4691 2.8692 3.6458 20 6 6.4707 3.0790 3.1313 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 1.0269 4.9401 -0.5156 27 1 1.5927 1.6839 2.0312 28 1 2.1018 3.1389 1.1412 29 1 4.3936 2.2136 0.9395 30 1 3.8844 0.7586 1.8295 31 1 3.3024 2.1622 3.7895 32 1 3.8116 3.6168 2.8989 33 1 5.2501 0.4698 4.6715 34 1 6.4515 3.9715 2.5235 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687803556.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:38 Heat of formation + Delta-G solvation = 78.983415 kcal Electronic energy + Delta-G solvation = -15133.575645 eV Core-core repulsion = 12682.347124 eV Total energy + Delta-G solvation = -2451.228521 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.95286 -36.22532 -33.60104 -31.71760 -31.16445 -29.76196 -28.03497 -25.18581 -23.43175 -21.85539 -21.36338 -19.76288 -19.53657 -17.51343 -16.50601 -14.80344 -14.43790 -14.37138 -14.04246 -13.89205 -13.41994 -12.90150 -12.63740 -12.41698 -11.83360 -11.55113 -11.26628 -10.94796 -10.86279 -10.62859 -10.36277 -10.26905 -10.18534 -9.78479 -9.67937 -9.50570 -9.36541 -8.42348 -8.18857 -6.50642 -5.69853 -3.22876 2.05670 3.00328 3.05298 3.38130 3.45724 3.49539 4.54402 4.99385 5.11168 5.37801 5.54466 5.64792 5.71694 5.98149 6.18978 6.25759 6.26985 6.39727 6.52200 6.58720 6.68954 6.74053 6.85867 6.96555 7.03674 7.05410 7.32886 7.37732 7.41263 7.79629 7.84027 7.92512 8.59070 9.28216 9.92995 10.49617 11.29324 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.024098 B = 0.007730 C = 0.006341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.660426 B = 3621.585827 C = 4414.899541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.142 3.858 3 N -0.587 5.587 4 C -0.250 4.250 5 H 0.059 0.941 6 C 0.007 3.993 7 N -0.888 5.888 8 Si 0.892 3.108 9 H -0.287 1.287 10 H -0.290 1.290 11 H -0.280 1.280 12 C 0.142 3.858 13 C -0.124 4.124 14 C -0.042 4.042 15 C -0.217 4.217 16 C 0.053 3.947 17 N -0.307 5.307 18 N -0.485 5.485 19 H 0.435 0.565 20 C 0.051 3.949 21 H 0.042 0.958 22 H 0.053 0.947 23 H 0.028 0.972 24 H 0.038 0.962 25 H 0.032 0.968 26 H 0.252 0.748 27 H 0.019 0.981 28 H 0.099 0.901 29 H 0.055 0.945 30 H 0.040 0.960 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.180 0.820 34 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.286 -1.797 7.240 10.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.015 3.985 3 N -0.308 5.308 4 C -0.380 4.380 5 H 0.077 0.923 6 C -0.193 4.193 7 N -0.532 5.532 8 Si 0.722 3.278 9 H -0.214 1.214 10 H -0.216 1.216 11 H -0.205 1.205 12 C 0.015 3.985 13 C -0.164 4.164 14 C -0.081 4.081 15 C -0.228 4.228 16 C -0.134 4.134 17 N -0.129 5.129 18 N -0.193 5.193 19 H 0.278 0.722 20 C -0.096 4.096 21 H 0.061 0.939 22 H 0.072 0.928 23 H 0.047 0.953 24 H 0.057 0.943 25 H 0.051 0.949 26 H 0.062 0.938 27 H 0.038 0.962 28 H 0.116 0.884 29 H 0.073 0.927 30 H 0.059 0.941 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.197 0.803 34 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 8.254 -2.134 7.761 11.529 hybrid contribution 0.126 1.144 -1.152 1.629 sum 8.379 -0.990 6.609 10.718 Atomic orbital electron populations 1.22287 0.99931 0.98195 1.01804 1.20849 0.91820 0.87837 0.97970 1.43904 1.74567 1.09812 1.02512 1.19053 1.37378 0.91147 0.90460 0.92343 1.25024 0.97659 0.98514 0.98078 1.69992 1.33784 1.10044 1.39343 0.86469 0.80071 0.79582 0.81721 1.21449 1.21580 1.20536 1.21005 0.90264 1.01702 0.85485 1.22145 1.01461 0.98404 0.94434 1.19938 0.89288 1.00980 0.97891 1.20399 0.97541 0.98506 1.06377 1.23820 0.91865 0.99131 0.98578 1.77225 1.14125 1.02971 1.18624 1.46219 1.09525 1.21680 1.41888 0.72217 1.22426 0.87013 1.00407 0.99722 0.93861 0.92815 0.95256 0.94311 0.94936 0.93759 0.96233 0.88380 0.92664 0.94147 0.91886 0.91643 0.80278 0.80862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.33 10.24 37.16 0.38 -2.95 16 2 C 0.14 3.06 6.39 -4.05 -0.03 3.04 16 3 N -0.59 -14.67 2.45 -173.24 -0.42 -15.09 16 4 C -0.25 -6.85 9.49 -15.06 -0.14 -6.99 16 5 H 0.06 1.61 7.93 -52.49 -0.42 1.19 16 6 C 0.01 0.18 4.95 -17.43 -0.09 0.09 16 7 N -0.89 -25.24 11.31 55.49 0.63 -24.62 16 8 Si 0.89 21.41 29.61 -169.99 -5.03 16.37 16 9 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 C 0.14 3.27 5.29 -4.05 -0.02 3.24 16 13 C -0.12 -2.44 5.52 -26.74 -0.15 -2.58 16 14 C -0.04 -0.67 5.70 -27.88 -0.16 -0.83 16 15 C -0.22 -3.25 5.35 -105.05 -0.56 -3.82 16 16 C 0.05 0.76 11.96 -17.36 -0.21 0.55 16 17 N -0.31 -4.55 12.70 30.62 0.39 -4.16 16 18 N -0.48 -6.02 7.36 30.44 0.22 -5.79 16 19 H 0.43 3.82 8.96 -182.60 -1.64 2.18 16 20 C 0.05 0.67 11.90 -17.23 -0.21 0.47 16 21 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 22 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 23 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.04 0.82 8.04 -51.93 -0.42 0.41 16 25 H 0.03 0.64 8.07 -51.93 -0.42 0.22 16 26 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 27 H 0.02 0.43 8.07 -51.93 -0.42 0.01 16 28 H 0.10 2.55 5.31 -51.93 -0.28 2.28 16 29 H 0.05 1.19 8.14 -51.92 -0.42 0.77 16 30 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.18 2.14 8.06 -52.49 -0.42 1.72 16 34 H 0.17 1.88 8.06 -52.49 -0.42 1.46 16 LS Contribution 289.35 15.07 4.36 4.36 Total: -1.00 -30.76 289.35 -7.56 -38.32 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -6.52 Total: 0.38 kcal Atomic # 6 Polarization: -8.60 SS G_CDS: -1.18 Total: -9.77 kcal Atomic # 7 Polarization: -50.48 SS G_CDS: 0.82 Total: -49.66 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.03 Total: 16.37 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -30.76 -7.56 -38.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687803556.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.306 kcal (2) G-P(sol) polarization free energy of solvation -30.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds