Wall clock time and date at job start Mon Mar 30 2020 02:34:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46893 * 110.99924 * 2 1 4 4 C 1.50706 * 109.47176 * 179.97438 * 3 2 1 5 5 C 1.39870 * 126.03842 * 269.69770 * 4 3 2 6 6 N 1.30843 * 108.19739 * 179.81381 * 5 4 3 7 7 N 1.40085 * 108.20785 * 0.44192 * 6 5 4 8 8 C 1.46498 * 126.03860 * 179.69717 * 7 6 5 9 9 H 1.08997 * 109.47255 * 25.02619 * 8 7 6 10 10 C 1.53011 * 109.46936 * 145.02180 * 8 7 6 11 11 C 1.52993 * 109.47223 * 265.02102 * 8 7 6 12 12 C 1.50698 * 109.47243 * 175.00385 * 11 8 7 13 13 H 1.07996 * 119.99887 * 359.97438 * 12 11 8 14 14 C 1.37875 * 119.99928 * 180.02562 * 12 11 8 15 15 N 1.31522 * 120.00241 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 120.00000 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.47336 * 89.99651 * 16 14 12 18 18 H 1.48501 * 109.47370 * 209.99710 * 16 14 12 19 19 H 1.48499 * 109.47144 * 329.99617 * 16 14 12 20 20 C 1.34949 * 107.92279 * 359.71181 * 7 6 5 21 21 H 1.08993 * 109.46933 * 299.99334 * 1 2 3 22 22 H 1.09003 * 109.46864 * 60.00013 * 1 2 3 23 23 H 1.09004 * 109.47251 * 179.97438 * 1 2 3 24 24 H 1.00893 * 110.99793 * 123.96030 * 2 1 3 25 25 H 1.09001 * 109.46739 * 60.00281 * 3 2 1 26 26 H 1.09000 * 109.47767 * 300.00540 * 3 2 1 27 27 H 1.07992 * 125.90134 * 359.97438 * 5 4 3 28 28 H 1.08998 * 109.46901 * 180.02562 * 10 8 7 29 29 H 1.09003 * 109.46502 * 299.99543 * 10 8 7 30 30 H 1.08991 * 109.46937 * 59.99731 * 10 8 7 31 31 H 1.09004 * 109.47384 * 295.00137 * 11 8 7 32 32 H 1.08999 * 109.47146 * 54.99527 * 11 8 7 33 33 H 0.96994 * 119.99667 * 179.97438 * 15 14 12 34 34 H 1.08005 * 126.12769 * 179.97438 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.5020 1.3312 0.0006 5 6 4.3242 1.3154 1.1320 6 7 5.5693 1.2760 0.7317 7 7 5.5789 1.2757 -0.6691 8 6 6.7690 1.2443 -1.5229 9 1 7.5951 0.7877 -0.9780 10 6 6.4728 0.4248 -2.7807 11 6 7.1482 2.6718 -1.9219 12 6 8.4403 2.6502 -2.6971 13 1 8.9411 1.7122 -2.8859 14 6 8.9836 3.8281 -3.1644 15 7 8.3740 4.9705 -2.9340 16 14 10.5857 3.8015 -4.1247 17 1 10.2924 3.6520 -5.5728 18 1 11.3205 5.0717 -3.8971 19 1 11.4178 2.6596 -3.6678 20 6 4.2982 1.3098 -1.0932 21 1 -0.3633 0.5137 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8306 -0.5262 0.7813 25 1 1.6459 1.8946 0.8900 26 1 1.6459 1.8948 -0.8899 27 1 3.9893 1.3303 2.1585 28 1 7.3584 0.4010 -3.4157 29 1 6.2027 -0.5922 -2.4963 30 1 5.6467 0.8813 -3.3255 31 1 6.3594 3.0974 -2.5423 32 1 7.2725 3.2788 -1.0252 33 1 8.7565 5.7991 -3.2625 34 1 3.9680 1.3189 -2.1215 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693464675.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:39 Heat of formation + Delta-G solvation = 64.541408 kcal Electronic energy + Delta-G solvation = -14916.531023 eV Core-core repulsion = 12464.676250 eV Total energy + Delta-G solvation = -2451.854773 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.73479 -36.18797 -35.11967 -32.51342 -30.40499 -29.60707 -27.08653 -26.29139 -23.99579 -23.07544 -21.65364 -19.85721 -19.24890 -16.76661 -16.10364 -15.42190 -14.86820 -14.54877 -14.30643 -13.93045 -13.75547 -13.28335 -12.73576 -12.38899 -12.09212 -12.01974 -11.84314 -11.58069 -11.51148 -11.01449 -10.94001 -10.61306 -10.22329 -9.97983 -9.88650 -9.32084 -8.75794 -8.47741 -8.46708 -7.84912 -6.11671 -4.16455 2.50866 3.13631 3.18534 3.25983 3.33186 3.36236 4.37351 4.51153 5.00924 5.24301 5.26938 5.28073 5.35128 5.52020 5.60831 5.65974 5.77653 5.77912 5.88303 5.98578 6.21444 6.44715 6.52819 6.63023 6.69471 6.98427 7.15020 7.38475 7.44529 7.52512 7.66493 7.88091 8.20694 8.30473 8.88346 9.48159 10.99590 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.053824 B = 0.005264 C = 0.005240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.093659 B = 5318.003858 C = 5341.961446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.693 5.693 3 C 0.144 3.856 4 C -0.263 4.263 5 C 0.035 3.965 6 N -0.299 5.299 7 N -0.343 5.343 8 C 0.152 3.848 9 H 0.091 0.909 10 C -0.148 4.148 11 C 0.020 3.980 12 C -0.523 4.523 13 H 0.061 0.939 14 C 0.061 3.939 15 N -0.890 5.890 16 Si 0.896 3.104 17 H -0.279 1.279 18 H -0.286 1.286 19 H -0.272 1.272 20 C 0.084 3.916 21 H 0.018 0.982 22 H 0.063 0.937 23 H 0.063 0.937 24 H 0.341 0.659 25 H 0.032 0.968 26 H 0.072 0.928 27 H 0.170 0.830 28 H 0.089 0.911 29 H 0.045 0.955 30 H 0.057 0.943 31 H 0.022 0.978 32 H 0.025 0.975 33 H 0.263 0.737 34 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.819 -8.096 3.880 14.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.324 5.324 3 C 0.014 3.986 4 C -0.276 4.276 5 C -0.150 4.150 6 N -0.120 5.120 7 N -0.123 5.123 8 C 0.052 3.948 9 H 0.109 0.891 10 C -0.206 4.206 11 C -0.018 4.018 12 C -0.562 4.562 13 H 0.079 0.921 14 C -0.141 4.141 15 N -0.528 5.528 16 Si 0.724 3.276 17 H -0.205 1.205 18 H -0.211 1.211 19 H -0.197 1.197 20 C -0.066 4.066 21 H 0.036 0.964 22 H 0.081 0.919 23 H 0.082 0.918 24 H 0.158 0.842 25 H 0.050 0.950 26 H 0.091 0.909 27 H 0.187 0.813 28 H 0.108 0.892 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.041 0.959 32 H 0.043 0.957 33 H 0.072 0.928 34 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -10.381 -8.011 3.445 13.557 hybrid contribution -0.211 0.509 0.134 0.567 sum -10.592 -7.502 3.579 13.464 Atomic orbital electron populations 1.22186 0.88472 1.01461 1.00164 1.60491 1.06775 1.14927 1.50191 1.20049 0.89585 0.88663 1.00257 1.19719 0.95275 1.20394 0.92186 1.23557 0.90474 1.01954 0.99062 1.77318 1.20794 1.23830 0.90076 1.49302 1.06112 1.52721 1.04153 1.21841 0.82780 1.01568 0.88625 0.89085 1.22069 1.03615 0.97837 0.97091 1.19487 0.97132 0.87966 0.97239 1.21029 1.06808 0.93341 1.35018 0.92100 1.25003 0.97575 0.95431 0.96136 1.69975 1.39352 0.97921 1.45601 0.86525 0.83308 0.77622 0.80171 1.20522 1.21131 1.19710 1.22196 0.84681 0.99936 0.99754 0.96362 0.91857 0.91806 0.84180 0.94978 0.90911 0.81264 0.89241 0.93632 0.92381 0.95941 0.95688 0.92757 0.81671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.70 60.07 0.64 0.89 16 2 N -0.69 -8.01 6.84 -122.42 -0.84 -8.85 16 3 C 0.14 1.81 6.17 -4.98 -0.03 1.77 16 4 C -0.26 -4.13 5.61 -105.05 -0.59 -4.72 16 5 C 0.04 0.58 11.96 -17.36 -0.21 0.37 16 6 N -0.30 -6.01 12.58 30.62 0.39 -5.63 16 7 N -0.34 -6.84 3.53 -54.86 -0.19 -7.03 16 8 C 0.15 3.16 3.35 -67.93 -0.23 2.94 16 9 H 0.09 1.94 8.14 -51.93 -0.42 1.52 16 10 C -0.15 -2.60 8.64 37.16 0.32 -2.28 16 11 C 0.02 0.50 4.77 -27.89 -0.13 0.37 16 12 C -0.52 -14.10 8.41 -34.44 -0.29 -14.39 16 13 H 0.06 1.55 7.06 -52.49 -0.37 1.18 16 14 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 15 N -0.89 -26.30 13.29 55.43 0.74 -25.57 16 16 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 17 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 18 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 20 C 0.08 1.47 10.50 -17.22 -0.18 1.29 16 21 H 0.02 0.15 8.14 -51.93 -0.42 -0.27 16 22 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.34 3.72 8.81 -39.30 -0.35 3.37 16 25 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.17 2.19 8.06 -52.49 -0.42 1.77 16 28 H 0.09 1.60 6.95 -51.93 -0.36 1.24 16 29 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.97 7.16 -51.93 -0.37 0.60 16 31 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 34 H 0.17 2.56 7.26 -52.48 -0.38 2.18 16 LS Contribution 289.54 15.07 4.36 4.36 Total: -1.00 -30.49 289.54 -6.55 -37.04 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -5.19 Total: 1.83 kcal Atomic # 6 Polarization: -11.37 SS G_CDS: -0.79 Total: -12.16 kcal Atomic # 7 Polarization: -47.16 SS G_CDS: 0.09 Total: -47.07 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -30.49 -6.55 -37.04 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693464675.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.581 kcal (2) G-P(sol) polarization free energy of solvation -30.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds