Wall clock time and date at job start Mon Mar 30 2020 02:32:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 N 1.46899 * 109.47254 * 120.00004 * 2 1 3 5 5 C 1.53002 * 109.46817 * 240.00231 * 2 1 3 6 6 C 1.50703 * 109.46970 * 175.00092 * 5 2 1 7 7 C 1.39877 * 126.03772 * 269.69222 * 6 5 2 8 8 N 1.30830 * 108.19817 * 179.81611 * 7 6 5 9 9 N 1.40081 * 108.21105 * 0.43734 * 8 7 6 10 10 C 1.46500 * 126.04205 * 179.69904 * 9 8 7 11 11 C 1.53007 * 109.46926 * 305.02312 * 10 9 8 12 12 C 1.50695 * 109.47235 * 179.97438 * 11 10 9 13 13 H 1.08004 * 120.00234 * 0.02562 * 12 11 10 14 14 C 1.37880 * 120.00302 * 180.02562 * 12 11 10 15 15 N 1.31508 * 119.99767 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99959 * 180.02562 * 14 12 11 17 17 H 1.48493 * 109.47347 * 60.00168 * 16 14 12 18 18 H 1.48507 * 109.46811 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47179 * 299.99569 * 16 14 12 20 20 C 1.34949 * 107.92562 * 359.71980 * 9 8 7 21 21 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 23 23 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 24 24 H 1.00893 * 111.00096 * 296.05084 * 4 2 1 25 25 H 1.00903 * 110.99833 * 59.99705 * 4 2 1 26 26 H 1.09000 * 109.47059 * 294.99790 * 5 2 1 27 27 H 1.08996 * 109.47073 * 54.99883 * 5 2 1 28 28 H 1.07998 * 125.89344 * 359.97438 * 7 6 5 29 29 H 1.09000 * 109.47099 * 65.02115 * 10 9 8 30 30 H 1.08996 * 109.47694 * 185.02582 * 10 9 8 31 31 H 1.09000 * 109.47070 * 299.99820 * 11 10 9 32 32 H 1.09005 * 109.46564 * 59.99872 * 11 10 9 33 33 H 0.97000 * 120.00351 * 179.97438 * 15 14 12 34 34 H 1.07995 * 126.13195 * 180.02562 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0399 -0.7212 -1.2493 6 6 3.5418 -0.6149 -1.3128 7 6 4.2691 0.3994 -1.9444 8 7 5.5432 0.1505 -1.7820 9 7 5.6673 -1.0370 -1.0494 10 6 6.9236 -1.6779 -0.6529 11 6 7.7879 -1.9166 -1.8928 12 6 9.0804 -2.5752 -1.4849 13 1 9.2668 -2.8014 -0.4454 14 6 10.0252 -2.8892 -2.4388 15 7 9.7986 -2.6134 -3.7045 16 14 11.6272 -3.7062 -1.9332 17 1 11.3345 -5.0057 -1.2769 18 1 12.4660 -3.9379 -3.1366 19 1 12.3543 -2.8252 -0.9845 20 6 4.4252 -1.4868 -0.7738 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5137 0.8900 23 1 -0.3635 0.5138 -0.8899 24 1 1.7502 -0.1990 2.0372 25 1 1.6961 -1.6479 1.2227 26 1 1.7515 -1.7715 -1.2057 27 1 1.6053 -0.2617 -2.1370 28 1 3.8509 1.2435 -2.4725 29 1 7.4577 -1.0309 0.0431 30 1 6.7088 -2.6315 -0.1708 31 1 7.2538 -2.5636 -2.5888 32 1 8.0027 -0.9629 -2.3750 33 1 10.4634 -2.8339 -4.3756 34 1 4.1801 -2.3820 -0.2216 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693518377.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:43 Heat of formation + Delta-G solvation = 55.168002 kcal Electronic energy + Delta-G solvation = -14717.228618 eV Core-core repulsion = 12264.967383 eV Total energy + Delta-G solvation = -2452.261234 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.54920 -36.70962 -34.15787 -32.26775 -30.61314 -29.41391 -28.73308 -26.08388 -24.43646 -21.80117 -20.98491 -19.99883 -19.26103 -16.70538 -16.20574 -15.68298 -14.76172 -14.59319 -14.21669 -14.01411 -13.45011 -13.17752 -12.91728 -12.58036 -12.29989 -12.22930 -11.66916 -11.43436 -11.28479 -10.99356 -10.93761 -10.67765 -10.20037 -9.88829 -9.66441 -9.26974 -8.70283 -8.63510 -8.40270 -7.64995 -6.04719 -4.10053 2.66467 3.31080 3.31447 3.36241 3.37935 3.40540 4.42239 4.52537 4.88762 5.02488 5.24067 5.26546 5.31052 5.41575 5.57569 5.70944 5.79370 5.82902 5.87345 6.11687 6.17289 6.23776 6.46063 6.63762 6.68596 7.15955 7.28817 7.42075 7.56026 7.68228 7.76675 7.99543 8.27976 8.45277 8.96196 9.54197 11.06443 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.068727 B = 0.004719 C = 0.004556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 407.310054 B = 5932.299921 C = 6144.032844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.091 3.909 3 H 0.079 0.921 4 N -0.837 5.837 5 C -0.026 4.026 6 C -0.243 4.243 7 C 0.027 3.973 8 N -0.288 5.288 9 N -0.352 5.352 10 C 0.132 3.868 11 C 0.017 3.983 12 C -0.529 4.529 13 H 0.058 0.942 14 C 0.061 3.939 15 N -0.889 5.889 16 Si 0.897 3.103 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.275 1.275 20 C 0.071 3.929 21 H 0.052 0.948 22 H 0.050 0.950 23 H 0.060 0.940 24 H 0.335 0.665 25 H 0.335 0.665 26 H 0.059 0.941 27 H 0.067 0.933 28 H 0.169 0.831 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.019 0.981 32 H 0.033 0.967 33 H 0.263 0.737 34 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.165 2.926 7.355 18.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.021 4.021 3 H 0.097 0.903 4 N -0.365 5.365 5 C -0.065 4.065 6 C -0.255 4.255 7 C -0.159 4.159 8 N -0.110 5.110 9 N -0.133 5.133 10 C 0.012 3.988 11 C -0.021 4.021 12 C -0.568 4.568 13 H 0.076 0.924 14 C -0.141 4.141 15 N -0.527 5.527 16 Si 0.725 3.275 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.201 1.201 20 C -0.077 4.077 21 H 0.072 0.928 22 H 0.069 0.931 23 H 0.079 0.921 24 H 0.147 0.853 25 H 0.147 0.853 26 H 0.078 0.922 27 H 0.086 0.914 28 H 0.186 0.814 29 H 0.090 0.910 30 H 0.100 0.900 31 H 0.038 0.962 32 H 0.051 0.949 33 H 0.073 0.927 34 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -14.982 3.376 6.684 16.749 hybrid contribution -0.995 -0.860 0.628 1.458 sum -15.977 2.515 7.312 17.750 Atomic orbital electron populations 1.22681 0.98413 1.01707 1.01934 1.21485 0.90755 0.98771 0.91086 0.90325 1.58798 1.67607 1.06040 1.04080 1.19801 0.90860 0.99796 0.96021 1.19608 0.95238 0.99603 1.11077 1.23584 0.90922 0.99901 1.01469 1.77365 1.18863 1.00504 1.14235 1.49075 1.06331 1.17805 1.40042 1.22200 0.80505 0.95295 1.00752 1.19340 0.93309 0.98330 0.91126 1.21013 1.01487 1.40467 0.93842 0.92394 1.24999 0.98583 0.95693 0.94860 1.69973 1.35311 1.46986 1.00462 0.86580 0.83149 0.79875 0.77938 1.20151 1.21199 1.20097 1.22137 0.84836 1.00106 1.00639 0.92846 0.93127 0.92121 0.85285 0.85263 0.92184 0.91404 0.81399 0.90976 0.89996 0.96221 0.94850 0.92739 0.82171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.43 9.48 37.16 0.35 -1.07 16 2 C 0.09 0.89 3.34 -67.71 -0.23 0.66 16 3 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 4 N -0.84 -8.08 8.86 -4.67 -0.04 -8.12 16 5 C -0.03 -0.29 5.35 -27.88 -0.15 -0.44 16 6 C -0.24 -3.76 5.10 -105.05 -0.54 -4.30 16 7 C 0.03 0.46 11.96 -17.36 -0.21 0.25 16 8 N -0.29 -6.15 12.42 30.62 0.38 -5.77 16 9 N -0.35 -7.21 3.68 -61.36 -0.23 -7.44 16 10 C 0.13 2.84 6.45 -4.04 -0.03 2.81 16 11 C 0.02 0.45 5.16 -27.88 -0.14 0.30 16 12 C -0.53 -14.93 9.11 -34.44 -0.31 -15.24 16 13 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 14 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 15 N -0.89 -27.11 13.29 55.43 0.74 -26.38 16 16 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 17 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 18 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 20 C 0.07 1.21 11.27 -17.22 -0.19 1.01 16 21 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 22 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 23 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.34 2.76 9.07 -39.30 -0.36 2.40 16 25 H 0.34 2.80 9.00 -39.29 -0.35 2.45 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.17 2.34 8.06 -52.49 -0.42 1.92 16 29 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 30 H 0.08 1.57 8.07 -51.93 -0.42 1.15 16 31 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.03 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 34 H 0.16 2.29 8.06 -52.49 -0.42 1.87 16 LS Contribution 293.36 15.07 4.42 4.42 Total: -1.00 -32.29 293.36 -6.61 -38.90 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -5.32 Total: 2.20 kcal Atomic # 6 Polarization: -12.81 SS G_CDS: -1.54 Total: -14.35 kcal Atomic # 7 Polarization: -48.55 SS G_CDS: 0.85 Total: -47.70 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -32.29 -6.61 -38.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693518377.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.070 kcal (2) G-P(sol) polarization free energy of solvation -32.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds