Wall clock time and date at job start Mon Mar 30 2020 02:32:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 N 1.46899 * 109.47254 * 120.00004 * 2 1 3 5 5 C 1.53002 * 109.46817 * 240.00231 * 2 1 3 6 6 C 1.50703 * 109.46970 * 175.00092 * 5 2 1 7 7 C 1.39877 * 126.03772 * 269.69222 * 6 5 2 8 8 N 1.30830 * 108.19817 * 179.81611 * 7 6 5 9 9 N 1.40081 * 108.21105 * 0.43734 * 8 7 6 10 10 C 1.46500 * 126.04205 * 179.69904 * 9 8 7 11 11 C 1.53007 * 109.46926 * 305.02312 * 10 9 8 12 12 C 1.50695 * 109.47235 * 179.97438 * 11 10 9 13 13 H 1.08004 * 120.00234 * 0.02562 * 12 11 10 14 14 C 1.37880 * 120.00302 * 180.02562 * 12 11 10 15 15 N 1.31508 * 119.99767 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99959 * 180.02562 * 14 12 11 17 17 H 1.48493 * 109.47347 * 60.00168 * 16 14 12 18 18 H 1.48507 * 109.46811 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47179 * 299.99569 * 16 14 12 20 20 C 1.34949 * 107.92562 * 359.71980 * 9 8 7 21 21 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 23 23 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 24 24 H 1.00893 * 111.00096 * 296.05084 * 4 2 1 25 25 H 1.00903 * 110.99833 * 59.99705 * 4 2 1 26 26 H 1.09000 * 109.47059 * 294.99790 * 5 2 1 27 27 H 1.08996 * 109.47073 * 54.99883 * 5 2 1 28 28 H 1.07998 * 125.89344 * 359.97438 * 7 6 5 29 29 H 1.09000 * 109.47099 * 65.02115 * 10 9 8 30 30 H 1.08996 * 109.47694 * 185.02582 * 10 9 8 31 31 H 1.09000 * 109.47070 * 299.99820 * 11 10 9 32 32 H 1.09005 * 109.46564 * 59.99872 * 11 10 9 33 33 H 0.97000 * 120.00351 * 179.97438 * 15 14 12 34 34 H 1.07995 * 126.13195 * 180.02562 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0399 -0.7212 -1.2493 6 6 3.5418 -0.6149 -1.3128 7 6 4.2691 0.3994 -1.9444 8 7 5.5432 0.1505 -1.7820 9 7 5.6673 -1.0370 -1.0494 10 6 6.9236 -1.6779 -0.6529 11 6 7.7879 -1.9166 -1.8928 12 6 9.0804 -2.5752 -1.4849 13 1 9.2668 -2.8014 -0.4454 14 6 10.0252 -2.8892 -2.4388 15 7 9.7986 -2.6134 -3.7045 16 14 11.6272 -3.7062 -1.9332 17 1 11.3345 -5.0057 -1.2769 18 1 12.4660 -3.9379 -3.1366 19 1 12.3543 -2.8252 -0.9845 20 6 4.4252 -1.4868 -0.7738 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5137 0.8900 23 1 -0.3635 0.5138 -0.8899 24 1 1.7502 -0.1990 2.0372 25 1 1.6961 -1.6479 1.2227 26 1 1.7515 -1.7715 -1.2057 27 1 1.6053 -0.2617 -2.1370 28 1 3.8509 1.2435 -2.4725 29 1 7.4577 -1.0309 0.0431 30 1 6.7088 -2.6315 -0.1708 31 1 7.2538 -2.5636 -2.5888 32 1 8.0027 -0.9629 -2.3750 33 1 10.4634 -2.8339 -4.3756 34 1 4.1801 -2.3820 -0.2216 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693518377.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:43 Heat of formation + Delta-G solvation = 32.572704 kcal Electronic energy + Delta-G solvation = -14718.208423 eV Core-core repulsion = 12264.967383 eV Total energy + Delta-G solvation = -2453.241040 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.94082 -37.55666 -36.04938 -34.14343 -31.79940 -31.12295 -29.58443 -27.51783 -26.01642 -23.67130 -21.86866 -21.47547 -20.58582 -18.72124 -17.34545 -16.90868 -16.62039 -16.01028 -15.39412 -15.21854 -14.85606 -14.32240 -14.27743 -13.85489 -13.72920 -13.36942 -13.19832 -12.84276 -12.67465 -12.42863 -12.37340 -12.10183 -11.77583 -11.70002 -11.43545 -11.13350 -10.61004 -10.18300 -9.40187 -8.99920 -8.24366 -6.39149 1.25777 1.40605 1.44933 1.52719 1.86852 2.09574 2.40405 3.09411 3.82083 3.83495 4.15452 4.18460 4.33146 4.38280 4.44350 4.53651 4.69442 4.71133 4.82384 5.04031 5.07928 5.16161 5.23285 5.35922 5.38585 5.50922 5.54678 5.71382 5.93492 6.10131 6.40956 6.49123 6.77666 6.79092 7.03214 7.31505 8.88047 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.068727 B = 0.004719 C = 0.004556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 407.310054 B = 5932.299921 C = 6144.032844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.096 3.904 3 H 0.064 0.936 4 N -0.851 5.851 5 C -0.024 4.024 6 C -0.232 4.232 7 C 0.027 3.973 8 N -0.349 5.349 9 N -0.375 5.375 10 C 0.147 3.853 11 C 0.029 3.971 12 C -0.548 4.548 13 H 0.075 0.925 14 C 0.000 4.000 15 N -0.935 5.935 16 Si 0.976 3.024 17 H -0.260 1.260 18 H -0.285 1.285 19 H -0.265 1.265 20 C 0.064 3.936 21 H 0.060 0.940 22 H 0.056 0.944 23 H 0.064 0.936 24 H 0.343 0.657 25 H 0.343 0.657 26 H 0.071 0.929 27 H 0.081 0.919 28 H 0.197 0.803 29 H 0.072 0.928 30 H 0.109 0.891 31 H -0.014 1.014 32 H -0.010 1.010 33 H 0.265 0.735 34 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.310 2.125 8.828 20.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.016 4.016 3 H 0.082 0.918 4 N -0.381 5.381 5 C -0.063 4.063 6 C -0.243 4.243 7 C -0.158 4.158 8 N -0.171 5.171 9 N -0.157 5.157 10 C 0.027 3.973 11 C -0.009 4.009 12 C -0.586 4.586 13 H 0.093 0.907 14 C -0.199 4.199 15 N -0.574 5.574 16 Si 0.799 3.201 17 H -0.185 1.185 18 H -0.211 1.211 19 H -0.190 1.190 20 C -0.083 4.083 21 H 0.079 0.921 22 H 0.075 0.925 23 H 0.083 0.917 24 H 0.156 0.844 25 H 0.156 0.844 26 H 0.090 0.910 27 H 0.099 0.901 28 H 0.214 0.786 29 H 0.090 0.910 30 H 0.127 0.873 31 H 0.005 0.995 32 H 0.008 0.992 33 H 0.073 0.927 34 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -16.165 2.577 8.180 18.299 hybrid contribution -0.755 -0.554 0.135 0.946 sum -16.920 2.023 8.315 18.962 Atomic orbital electron populations 1.22566 0.96415 1.02352 1.02521 1.21343 0.92207 0.97640 0.90379 0.91770 1.58780 1.68132 1.06754 1.04435 1.19922 0.87763 1.01041 0.97540 1.20078 0.97283 0.97984 1.08978 1.24212 0.90133 1.00850 1.00615 1.77309 1.21326 1.01992 1.16484 1.48932 1.06822 1.18312 1.41637 1.21834 0.80809 0.96739 0.97933 1.19082 0.94038 0.95132 0.92624 1.21508 1.02090 1.40230 0.94766 0.90692 1.26081 1.02867 0.96238 0.94667 1.70140 1.36871 1.48421 1.01958 0.85346 0.77836 0.79239 0.77682 1.18466 1.21080 1.18969 1.22723 0.83709 1.01142 1.00679 0.92139 0.92472 0.91657 0.84433 0.84361 0.90989 0.90061 0.78631 0.90983 0.87305 0.99523 0.99189 0.92651 0.79504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.19 9.48 71.98 0.68 -1.51 16 2 C 0.10 1.64 3.34 44.92 0.15 1.79 16 3 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 4 N -0.85 -14.42 8.86 -168.68 -1.49 -15.91 16 5 C -0.02 -0.47 5.35 29.85 0.16 -0.31 16 6 C -0.23 -6.81 5.10 -20.14 -0.10 -6.91 16 7 C 0.03 0.92 11.96 85.24 1.02 1.94 16 8 N -0.35 -15.28 12.42 -57.02 -0.71 -15.99 16 9 N -0.38 -15.52 3.68 -348.05 -1.28 -16.80 16 10 C 0.15 6.40 6.45 86.38 0.56 6.96 16 11 C 0.03 1.62 5.16 29.85 0.15 1.77 16 12 C -0.55 -31.25 9.11 25.60 0.23 -31.02 16 13 H 0.07 3.92 7.74 -2.91 -0.02 3.90 16 14 C 0.00 -0.02 5.46 84.66 0.46 0.45 16 15 N -0.93 -58.61 13.29 21.45 0.28 -58.33 16 16 Si 0.98 44.16 29.54 68.60 2.03 46.19 16 17 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 18 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 19 H -0.26 -11.47 7.11 99.48 0.71 -10.77 16 20 C 0.06 2.09 11.27 83.54 0.94 3.03 16 21 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 22 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 23 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 24 H 0.34 4.91 9.07 -89.70 -0.81 4.10 16 25 H 0.34 4.81 9.00 -89.69 -0.81 4.00 16 26 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.20 5.23 8.06 -2.91 -0.02 5.21 16 29 H 0.07 3.07 8.14 -2.39 -0.02 3.05 16 30 H 0.11 4.06 8.07 -2.39 -0.02 4.04 16 31 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 32 H -0.01 -0.66 8.14 -2.38 -0.02 -0.68 16 33 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 34 H 0.19 4.91 8.06 -2.91 -0.02 4.88 16 Total: -1.00 -71.96 293.36 2.55 -69.41 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: -0.53 Total: 15.25 kcal Atomic # 6 Polarization: -28.07 SS G_CDS: 4.26 Total: -23.81 kcal Atomic # 7 Polarization: -103.84 SS G_CDS: -3.20 Total: -107.04 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -71.96 2.55 -69.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693518377.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.978 kcal (2) G-P(sol) polarization free energy of solvation -71.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds