Wall clock time and date at job start Mon Mar 30 2020 02:34:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.46890 * 2 1 4 4 C 1.53001 * 109.46966 * 240.00400 * 2 1 3 5 5 C 1.50695 * 109.47478 * 64.99742 * 4 2 1 6 6 H 1.07999 * 120.00126 * 0.02562 * 5 4 2 7 7 C 1.37881 * 120.00042 * 179.97438 * 5 4 2 8 8 N 1.31508 * 120.00103 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99715 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46984 * 90.00491 * 9 7 5 11 11 H 1.48505 * 109.46854 * 210.00106 * 9 7 5 12 12 H 1.48496 * 109.47273 * 330.00382 * 9 7 5 13 13 N 1.46501 * 109.47426 * 120.00160 * 2 1 3 14 14 C 1.34951 * 126.03605 * 35.31094 * 13 2 1 15 15 C 1.35306 * 107.74429 * 180.14882 * 14 13 2 16 16 C 1.50706 * 126.04096 * 179.87280 * 15 14 13 17 17 C 1.52999 * 109.47090 * 269.71662 * 16 15 14 18 18 N 1.46896 * 109.47443 * 180.02562 * 17 16 15 19 19 C 1.39869 * 107.92235 * 359.60729 * 15 14 13 20 20 N 1.30838 * 108.20185 * 0.24422 * 19 15 14 21 21 H 1.09003 * 109.47252 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47481 * 299.99711 * 1 2 3 23 23 H 1.09008 * 109.47606 * 59.99917 * 1 2 3 24 24 H 1.09004 * 109.46906 * 185.00102 * 4 2 1 25 25 H 1.09004 * 109.47045 * 304.99584 * 4 2 1 26 26 H 0.97008 * 120.00004 * 179.97438 * 8 7 5 27 27 H 1.07996 * 126.12367 * 359.97438 * 14 13 2 28 28 H 1.08994 * 109.46790 * 29.71060 * 16 15 14 29 29 H 1.08997 * 109.47305 * 149.71501 * 16 15 14 30 30 H 1.09011 * 109.46854 * 299.99717 * 17 16 15 31 31 H 1.09005 * 109.47366 * 59.99142 * 17 16 15 32 32 H 1.00898 * 111.00173 * 56.03578 * 18 17 16 33 33 H 1.00896 * 111.00295 * 179.97438 * 18 17 16 34 34 H 1.08000 * 125.90176 * 180.22053 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6412 0.0571 -2.4766 6 1 1.0805 0.9746 -2.3757 7 6 1.9931 -0.4016 -3.7283 8 7 2.6763 -1.5186 -3.8512 9 14 1.4982 0.5628 -5.2497 10 1 2.5629 1.5431 -5.5823 11 1 1.3120 -0.3713 -6.3890 12 1 0.2265 1.2832 -4.9871 13 7 2.0183 -0.6906 1.1961 14 6 1.4435 -1.7596 1.7860 15 6 2.1966 -2.0928 2.8596 16 6 1.9266 -3.2270 3.8145 17 6 1.0543 -2.7263 4.9674 18 7 0.7916 -3.8316 5.8986 19 6 3.2735 -1.2025 2.9229 20 7 3.1676 -0.3615 1.9262 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 3.1263 -0.7994 -1.2056 25 1 1.6053 -1.7198 -1.2952 26 1 2.9236 -1.8415 -4.7319 27 1 0.5420 -2.2578 1.4612 28 1 1.4085 -4.0290 3.2888 29 1 2.8707 -3.6020 4.2095 30 1 1.5725 -1.9241 5.4932 31 1 0.1102 -2.3512 4.5724 32 1 1.6536 -4.2386 6.2292 33 1 0.2172 -3.5260 6.6698 34 1 4.0569 -1.2080 3.6663 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693518475.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:24 Heat of formation + Delta-G solvation = 54.774198 kcal Electronic energy + Delta-G solvation = -14899.171866 eV Core-core repulsion = 12446.893555 eV Total energy + Delta-G solvation = -2452.278311 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.76204 -35.91652 -35.00929 -32.54301 -31.05683 -29.64082 -27.10765 -26.87763 -23.92369 -22.31130 -21.55523 -19.75830 -19.27409 -16.76202 -16.09508 -15.54998 -14.87852 -14.79880 -14.25088 -14.16242 -13.69995 -13.30777 -12.61308 -12.37896 -12.20869 -12.00509 -11.71587 -11.54689 -11.08191 -11.01960 -10.91281 -10.62253 -10.24082 -9.98056 -9.88236 -9.33141 -8.83890 -8.74938 -8.48404 -7.82400 -6.12292 -4.17287 2.48402 3.14779 3.20133 3.25746 3.32676 3.34929 4.36584 4.52235 5.06437 5.17891 5.23926 5.34100 5.37413 5.57627 5.61212 5.73280 5.85683 5.92899 5.99947 6.19526 6.26883 6.43170 6.56134 6.60877 6.67719 7.01070 7.12554 7.29986 7.43575 7.51497 7.65257 7.87153 8.19710 8.29408 8.87464 9.47364 10.98921 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.053743 B = 0.005231 C = 0.005201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.874514 B = 5351.843083 C = 5381.905823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.152 3.848 3 H 0.091 0.909 4 C 0.020 3.980 5 C -0.524 4.524 6 H 0.061 0.939 7 C 0.061 3.939 8 N -0.890 5.890 9 Si 0.896 3.104 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.272 1.272 13 N -0.342 5.342 14 C 0.067 3.933 15 C -0.260 4.260 16 C -0.030 4.030 17 C 0.066 3.934 18 N -0.855 5.855 19 C 0.033 3.967 20 N -0.299 5.299 21 H 0.057 0.943 22 H 0.044 0.956 23 H 0.089 0.911 24 H 0.025 0.975 25 H 0.022 0.978 26 H 0.263 0.737 27 H 0.166 0.834 28 H 0.071 0.929 29 H 0.062 0.938 30 H 0.025 0.975 31 H 0.069 0.931 32 H 0.338 0.662 33 H 0.338 0.662 34 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.686 -1.674 14.568 15.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.052 3.948 3 H 0.109 0.891 4 C -0.018 4.018 5 C -0.563 4.563 6 H 0.079 0.921 7 C -0.141 4.141 8 N -0.528 5.528 9 Si 0.724 3.276 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.197 1.197 13 N -0.123 5.123 14 C -0.082 4.082 15 C -0.273 4.273 16 C -0.069 4.069 17 C -0.065 4.065 18 N -0.384 5.384 19 C -0.152 4.152 20 N -0.120 5.120 21 H 0.076 0.924 22 H 0.063 0.937 23 H 0.108 0.892 24 H 0.043 0.957 25 H 0.041 0.959 26 H 0.073 0.927 27 H 0.183 0.817 28 H 0.089 0.911 29 H 0.080 0.920 30 H 0.043 0.957 31 H 0.088 0.912 32 H 0.150 0.850 33 H 0.150 0.850 34 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -3.504 -1.021 13.075 13.575 hybrid contribution 0.020 0.303 0.147 0.338 sum -3.484 -0.718 13.223 13.693 Atomic orbital electron populations 1.22069 0.93809 1.02465 1.02268 1.21836 0.94067 0.97173 0.81751 0.89090 1.19490 0.97349 0.95853 0.89141 1.21026 1.36161 1.08680 0.90405 0.92116 1.25002 0.94875 0.95016 0.99238 1.69974 1.38040 1.20930 1.23841 0.86525 0.78991 0.79729 0.82376 1.20531 1.21113 1.19716 1.49289 1.17957 1.22882 1.22162 1.22223 0.99746 0.91676 0.94587 1.19814 1.00457 1.04816 1.02176 1.19695 0.98877 0.94795 0.93573 1.21853 0.99683 0.91439 0.93529 1.58752 1.22869 1.34691 1.22074 1.23572 0.99066 0.94796 0.97728 1.77314 1.03494 1.24219 1.07010 0.92382 0.93735 0.89194 0.95687 0.95918 0.92737 0.81714 0.91069 0.91977 0.95693 0.91213 0.85010 0.85034 0.81180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.57 8.65 37.15 0.32 -2.25 16 2 C 0.15 3.15 3.35 -67.93 -0.23 2.92 16 3 H 0.09 1.93 8.14 -51.93 -0.42 1.51 16 4 C 0.02 0.50 4.77 -27.88 -0.13 0.37 16 5 C -0.52 -14.11 8.41 -34.44 -0.29 -14.40 16 6 H 0.06 1.55 7.06 -52.49 -0.37 1.18 16 7 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 8 N -0.89 -26.32 13.29 55.43 0.74 -25.58 16 9 Si 0.90 21.01 29.54 -169.99 -5.02 15.99 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 13 N -0.34 -6.81 3.52 -54.87 -0.19 -7.00 16 14 C 0.07 1.15 10.51 -17.23 -0.18 0.97 16 15 C -0.26 -4.04 5.35 -105.05 -0.56 -4.60 16 16 C -0.03 -0.37 5.96 -27.88 -0.17 -0.54 16 17 C 0.07 0.71 6.77 -3.83 -0.03 0.68 16 18 N -0.85 -7.88 9.62 -10.37 -0.10 -7.98 16 19 C 0.03 0.55 11.96 -17.36 -0.21 0.35 16 20 N -0.30 -6.02 12.58 30.62 0.39 -5.63 16 21 H 0.06 0.96 7.16 -51.93 -0.37 0.59 16 22 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 23 H 0.09 1.60 6.95 -51.92 -0.36 1.24 16 24 H 0.02 0.72 8.14 -51.93 -0.42 0.29 16 25 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 27 H 0.17 2.48 7.27 -52.49 -0.38 2.10 16 28 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.02 0.27 8.14 -51.92 -0.42 -0.16 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.34 2.64 8.99 -39.29 -0.35 2.28 16 33 H 0.34 2.53 9.08 -39.29 -0.36 2.17 16 34 H 0.17 2.22 8.06 -52.49 -0.42 1.80 16 LS Contribution 289.06 15.07 4.36 4.36 Total: -1.00 -30.77 289.06 -6.54 -37.31 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -5.13 Total: 3.43 kcal Atomic # 6 Polarization: -13.33 SS G_CDS: -1.57 Total: -14.90 kcal Atomic # 7 Polarization: -47.01 SS G_CDS: 0.83 Total: -46.19 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -30.77 -6.54 -37.31 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693518475.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.083 kcal (2) G-P(sol) polarization free energy of solvation -30.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds