Wall clock time and date at job start Mon Mar 30 2020 02:34:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.46890 * 2 1 4 4 C 1.53001 * 109.46966 * 240.00400 * 2 1 3 5 5 C 1.50695 * 109.47478 * 64.99742 * 4 2 1 6 6 H 1.07999 * 120.00126 * 0.02562 * 5 4 2 7 7 C 1.37881 * 120.00042 * 179.97438 * 5 4 2 8 8 N 1.31508 * 120.00103 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99715 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46984 * 90.00491 * 9 7 5 11 11 H 1.48505 * 109.46854 * 210.00106 * 9 7 5 12 12 H 1.48496 * 109.47273 * 330.00382 * 9 7 5 13 13 N 1.46501 * 109.47426 * 120.00160 * 2 1 3 14 14 C 1.34951 * 126.03605 * 35.31094 * 13 2 1 15 15 C 1.35306 * 107.74429 * 180.14882 * 14 13 2 16 16 C 1.50706 * 126.04096 * 179.87280 * 15 14 13 17 17 C 1.52999 * 109.47090 * 269.71662 * 16 15 14 18 18 N 1.46896 * 109.47443 * 180.02562 * 17 16 15 19 19 C 1.39869 * 107.92235 * 359.60729 * 15 14 13 20 20 N 1.30838 * 108.20185 * 0.24422 * 19 15 14 21 21 H 1.09003 * 109.47252 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47481 * 299.99711 * 1 2 3 23 23 H 1.09008 * 109.47606 * 59.99917 * 1 2 3 24 24 H 1.09004 * 109.46906 * 185.00102 * 4 2 1 25 25 H 1.09004 * 109.47045 * 304.99584 * 4 2 1 26 26 H 0.97008 * 120.00004 * 179.97438 * 8 7 5 27 27 H 1.07996 * 126.12367 * 359.97438 * 14 13 2 28 28 H 1.08994 * 109.46790 * 29.71060 * 16 15 14 29 29 H 1.08997 * 109.47305 * 149.71501 * 16 15 14 30 30 H 1.09011 * 109.46854 * 299.99717 * 17 16 15 31 31 H 1.09005 * 109.47366 * 59.99142 * 17 16 15 32 32 H 1.00898 * 111.00173 * 56.03578 * 18 17 16 33 33 H 1.00896 * 111.00295 * 179.97438 * 18 17 16 34 34 H 1.08000 * 125.90176 * 180.22053 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6412 0.0571 -2.4766 6 1 1.0805 0.9746 -2.3757 7 6 1.9931 -0.4016 -3.7283 8 7 2.6763 -1.5186 -3.8512 9 14 1.4982 0.5628 -5.2497 10 1 2.5629 1.5431 -5.5823 11 1 1.3120 -0.3713 -6.3890 12 1 0.2265 1.2832 -4.9871 13 7 2.0183 -0.6906 1.1961 14 6 1.4435 -1.7596 1.7860 15 6 2.1966 -2.0928 2.8596 16 6 1.9266 -3.2270 3.8145 17 6 1.0543 -2.7263 4.9674 18 7 0.7916 -3.8316 5.8986 19 6 3.2735 -1.2025 2.9229 20 7 3.1676 -0.3615 1.9262 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 3.1263 -0.7994 -1.2056 25 1 1.6053 -1.7198 -1.2952 26 1 2.9236 -1.8415 -4.7319 27 1 0.5420 -2.2578 1.4612 28 1 1.4085 -4.0290 3.2888 29 1 2.8707 -3.6020 4.2095 30 1 1.5725 -1.9241 5.4932 31 1 0.1102 -2.3512 4.5724 32 1 1.6536 -4.2386 6.2292 33 1 0.2172 -3.5260 6.6698 34 1 4.0569 -1.2080 3.6663 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693518475.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:24 Heat of formation + Delta-G solvation = 33.476812 kcal Electronic energy + Delta-G solvation = -14900.095390 eV Core-core repulsion = 12446.893555 eV Total energy + Delta-G solvation = -2453.201835 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.14108 -37.32405 -36.21281 -34.50720 -32.18302 -31.22522 -28.91485 -28.03445 -25.70395 -23.60916 -22.88949 -21.08713 -20.76542 -18.69462 -17.49028 -16.72073 -16.47056 -15.90459 -15.73781 -15.56966 -14.89346 -14.74917 -14.30683 -13.83339 -13.65163 -13.34995 -13.13304 -12.91182 -12.75686 -12.66710 -12.36042 -12.04380 -11.97987 -11.68712 -11.41123 -11.31922 -10.63320 -10.27613 -9.54653 -9.17944 -8.25258 -6.38193 1.09087 1.40865 1.42289 1.53198 1.72267 1.93169 2.39586 3.09347 3.64189 3.84885 4.01048 4.15266 4.21096 4.28543 4.38323 4.47152 4.60021 4.73973 4.84562 4.93778 4.98126 5.02190 5.21165 5.29928 5.32178 5.40667 5.48583 5.68329 5.87984 6.03782 6.29279 6.31108 6.69353 6.76415 6.90762 7.31936 8.87209 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.053743 B = 0.005231 C = 0.005201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.874514 B = 5351.843083 C = 5381.905823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.162 3.838 3 H 0.081 0.919 4 C 0.032 3.968 5 C -0.535 4.535 6 H 0.075 0.925 7 C 0.002 3.998 8 N -0.934 5.934 9 Si 0.970 3.030 10 H -0.276 1.276 11 H -0.284 1.284 12 H -0.254 1.254 13 N -0.364 5.364 14 C 0.052 3.948 15 C -0.249 4.249 16 C -0.025 4.025 17 C 0.074 3.926 18 N -0.859 5.859 19 C 0.039 3.961 20 N -0.346 5.346 21 H 0.064 0.936 22 H 0.070 0.930 23 H 0.086 0.914 24 H -0.023 1.023 25 H -0.001 1.001 26 H 0.264 0.736 27 H 0.183 0.817 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.028 0.972 31 H 0.061 0.939 32 H 0.347 0.653 33 H 0.349 0.651 34 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.822 -1.433 15.664 16.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.061 3.939 3 H 0.099 0.901 4 C -0.006 4.006 5 C -0.573 4.573 6 H 0.093 0.907 7 C -0.196 4.196 8 N -0.574 5.574 9 Si 0.794 3.206 10 H -0.202 1.202 11 H -0.209 1.209 12 H -0.178 1.178 13 N -0.145 5.145 14 C -0.095 4.095 15 C -0.261 4.261 16 C -0.064 4.064 17 C -0.057 4.057 18 N -0.390 5.390 19 C -0.146 4.146 20 N -0.168 5.168 21 H 0.083 0.917 22 H 0.089 0.911 23 H 0.104 0.896 24 H -0.005 1.005 25 H 0.017 0.983 26 H 0.073 0.927 27 H 0.200 0.800 28 H 0.087 0.913 29 H 0.096 0.904 30 H 0.046 0.954 31 H 0.079 0.921 32 H 0.160 0.840 33 H 0.162 0.838 34 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -4.655 -0.782 14.207 14.971 hybrid contribution 0.442 0.145 -0.076 0.471 sum -4.213 -0.637 14.131 14.760 Atomic orbital electron populations 1.21967 0.90929 1.03266 1.03302 1.21477 0.96139 0.95787 0.80489 0.90117 1.19262 0.94156 0.95296 0.91898 1.21466 1.35765 1.09080 0.91022 0.90651 1.26005 0.94733 0.95944 1.02939 1.70126 1.39615 1.22961 1.24681 0.85372 0.79257 0.78146 0.77841 1.20194 1.20942 1.17794 1.49139 1.18724 1.24219 1.22444 1.22712 1.00625 0.91166 0.95003 1.20195 0.99271 1.04850 1.01826 1.19722 1.00007 0.93335 0.93345 1.21672 0.98888 0.91885 0.93302 1.58692 1.23674 1.34081 1.22559 1.24220 0.99679 0.93675 0.97055 1.77261 1.04405 1.26435 1.08671 0.91703 0.91131 0.89569 1.00464 0.98254 0.92700 0.80021 0.91333 0.90428 0.95396 0.92063 0.83954 0.83779 0.77852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.61 8.65 71.98 0.62 -3.98 16 2 C 0.16 6.84 3.35 44.99 0.15 6.99 16 3 H 0.08 3.51 8.14 -2.39 -0.02 3.49 16 4 C 0.03 1.69 4.77 29.85 0.14 1.84 16 5 C -0.54 -29.22 8.41 25.60 0.22 -29.01 16 6 H 0.08 3.81 7.06 -2.91 -0.02 3.79 16 7 C 0.00 0.12 5.46 84.66 0.46 0.58 16 8 N -0.93 -56.76 13.29 21.45 0.28 -56.48 16 9 Si 0.97 43.10 29.54 68.60 2.03 45.12 16 10 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 11 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 12 H -0.25 -10.48 7.11 99.48 0.71 -9.77 16 13 N -0.36 -14.59 3.52 -327.51 -1.15 -15.74 16 14 C 0.05 1.76 10.51 83.54 0.88 2.64 16 15 C -0.25 -7.36 5.35 -20.14 -0.11 -7.47 16 16 C -0.03 -0.55 5.96 29.85 0.18 -0.38 16 17 C 0.07 1.41 6.77 86.30 0.58 1.99 16 18 N -0.86 -13.55 9.62 -186.71 -1.80 -15.35 16 19 C 0.04 1.23 11.96 85.24 1.02 2.25 16 20 N -0.35 -14.01 12.58 -57.02 -0.72 -14.72 16 21 H 0.06 2.07 7.16 -2.39 -0.02 2.06 16 22 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 23 H 0.09 2.96 6.95 -2.38 -0.02 2.95 16 24 H -0.02 -1.42 8.14 -2.38 -0.02 -1.44 16 25 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 26 H 0.26 15.10 8.31 -92.70 -0.77 14.33 16 27 H 0.18 5.28 7.27 -2.91 -0.02 5.26 16 28 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.03 0.52 8.14 -2.38 -0.02 0.50 16 31 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 32 H 0.35 4.44 8.99 -89.70 -0.81 3.63 16 33 H 0.35 4.33 9.08 -89.70 -0.81 3.51 16 34 H 0.20 4.81 8.06 -2.91 -0.02 4.79 16 Total: -1.00 -67.77 289.06 2.26 -65.51 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: -0.52 Total: 16.22 kcal Atomic # 6 Polarization: -28.70 SS G_CDS: 4.14 Total: -24.55 kcal Atomic # 7 Polarization: -98.91 SS G_CDS: -3.38 Total: -102.29 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.12 kcal Total: -67.77 2.26 -65.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693518475.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.982 kcal (2) G-P(sol) polarization free energy of solvation -67.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds