Wall clock time and date at job start Mon Mar 30 2020 03:16:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86803 * 120.00061 * 2 1 4 4 H 1.48504 * 109.46835 * 270.00135 * 3 2 1 5 5 H 1.48502 * 109.47093 * 29.99702 * 3 2 1 6 6 H 1.48494 * 109.47106 * 150.00166 * 3 2 1 7 7 C 1.37875 * 119.99927 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99791 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00071 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47333 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47118 * 179.97438 * 10 9 7 12 12 N 1.46904 * 109.47047 * 179.97438 * 11 10 9 13 13 C 1.46897 * 111.00065 * 180.02562 * 12 11 10 14 14 C 1.52995 * 109.47201 * 180.02562 * 13 12 11 15 15 C 1.53003 * 119.30184 * 109.47733 * 14 13 12 16 16 C 1.53001 * 60.37853 * 111.30646 * 15 14 13 17 17 H 1.09000 * 119.75831 * 248.88252 * 16 15 14 18 18 C 1.54265 * 118.19593 * 93.61489 * 16 15 14 19 19 C 1.54887 * 104.20056 * 272.21315 * 18 16 15 20 20 C 1.54463 * 117.59686 * 314.22448 * 14 13 12 21 21 H 0.96998 * 119.99708 * 0.02562 * 1 2 3 22 22 H 1.08997 * 109.47475 * 59.99466 * 9 7 2 23 23 H 1.09004 * 109.47187 * 299.99683 * 9 7 2 24 24 H 1.08995 * 109.46794 * 59.99751 * 10 9 7 25 25 H 1.08993 * 109.46877 * 299.99480 * 10 9 7 26 26 H 1.09007 * 109.47134 * 59.99897 * 11 10 9 27 27 H 1.09001 * 109.47108 * 300.00026 * 11 10 9 28 28 H 1.00905 * 110.99168 * 56.04954 * 12 11 10 29 29 H 1.08999 * 109.47266 * 59.99956 * 13 12 11 30 30 H 1.09004 * 109.46896 * 300.00624 * 13 12 11 31 31 H 1.09003 * 117.45337 * 3.71072 * 15 14 13 32 32 H 1.08992 * 117.46289 * 218.90788 * 15 14 13 33 33 H 1.09004 * 110.48891 * 153.53288 * 18 16 15 34 34 H 1.09004 * 110.59809 * 30.94928 * 18 16 15 35 35 H 1.09002 * 110.75856 * 156.25785 * 19 18 16 36 36 H 1.09006 * 110.75640 * 279.44771 * 19 18 16 37 37 H 1.09003 * 110.40626 * 124.47218 * 20 14 13 38 38 H 1.09003 * 110.65885 * 1.77443 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9871 0.0012 12 7 2.4349 -6.1037 0.0006 13 6 1.7346 -7.3950 0.0005 14 6 2.7594 -8.5310 0.0005 15 6 2.9307 -9.3850 1.2584 16 6 2.3195 -10.0055 0.0005 17 1 1.2653 -10.2824 -0.0087 18 6 3.2566 -10.7449 -0.9766 19 6 3.7661 -9.6342 -1.9283 20 6 3.9476 -8.4227 -0.9804 21 1 -0.4849 0.8401 -0.0004 22 1 0.6247 -2.5571 -0.8896 23 1 0.6241 -2.5567 0.8903 24 1 2.8719 -3.6043 0.8905 25 1 2.8718 -3.6044 -0.8895 26 1 0.8532 -5.0450 -0.8886 27 1 0.8539 -5.0445 0.8914 28 1 3.0702 -6.0365 0.7816 29 1 1.1093 -7.4692 -0.8892 30 1 1.1099 -7.4695 0.8907 31 1 2.2623 -9.1855 2.0961 32 1 3.9429 -9.6869 1.5270 33 1 2.7056 -11.5021 -1.5345 34 1 4.0896 -11.1989 -0.4397 35 1 4.7172 -9.9179 -2.3790 36 1 3.0257 -9.4151 -2.6977 37 1 4.8927 -8.4974 -0.4424 38 1 3.8996 -7.4891 -1.5410 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693563229.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:45 Heat of formation + Delta-G solvation = -2.135060 kcal Electronic energy + Delta-G solvation = -14824.403314 eV Core-core repulsion = 12473.197576 eV Total energy + Delta-G solvation = -2351.205738 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.81035 -36.07334 -33.44791 -31.94238 -31.02707 -28.47757 -26.55832 -24.45827 -22.54472 -22.14963 -20.32617 -20.18404 -18.63320 -16.35625 -15.91493 -15.55155 -14.79482 -14.52806 -14.02910 -13.62843 -13.49848 -13.20973 -12.97173 -12.40083 -11.98765 -11.76705 -11.44475 -11.18709 -11.11431 -10.99632 -10.83820 -10.69068 -10.53636 -10.49301 -10.06082 -9.66359 -9.53236 -9.26033 -9.00999 -8.31335 -8.10089 -5.96579 -3.98531 3.34563 3.40378 3.44151 3.47548 4.25519 4.47550 4.51717 4.68856 4.82105 4.99067 5.07837 5.30019 5.37130 5.39198 5.47687 5.58177 5.63920 5.70069 5.74703 5.80830 5.87797 5.90531 6.02913 6.10926 6.17413 6.26928 6.36673 6.38187 6.76471 6.81820 7.18006 7.40708 7.69862 7.72707 7.87751 8.04211 8.47618 9.08808 9.65300 11.14936 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.065463 B = 0.003902 C = 0.003821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 427.622069 B = 7174.270468 C = 7325.674088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.518 4.518 8 H 0.055 0.945 9 C 0.021 3.979 10 C -0.106 4.106 11 C 0.059 3.941 12 N -0.686 5.686 13 C 0.102 3.898 14 C -0.129 4.129 15 C -0.152 4.152 16 C -0.165 4.165 17 H 0.106 0.894 18 C -0.094 4.094 19 C -0.125 4.125 20 C -0.082 4.082 21 H 0.260 0.740 22 H 0.016 0.984 23 H 0.013 0.987 24 H 0.044 0.956 25 H 0.056 0.944 26 H 0.066 0.934 27 H 0.023 0.977 28 H 0.338 0.662 29 H 0.071 0.929 30 H 0.026 0.974 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.061 0.939 38 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.523 -20.138 -0.280 20.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.556 4.556 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.144 4.144 11 C -0.070 4.070 12 N -0.316 5.316 13 C -0.027 4.027 14 C -0.129 4.129 15 C -0.189 4.189 16 C -0.184 4.184 17 H 0.124 0.876 18 C -0.132 4.132 19 C -0.162 4.162 20 C -0.119 4.119 21 H 0.069 0.931 22 H 0.034 0.966 23 H 0.032 0.968 24 H 0.063 0.937 25 H 0.074 0.926 26 H 0.084 0.916 27 H 0.041 0.959 28 H 0.155 0.845 29 H 0.090 0.910 30 H 0.044 0.956 31 H 0.112 0.888 32 H 0.108 0.892 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.080 0.920 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 5.443 -20.000 -0.978 20.751 hybrid contribution -0.078 0.890 1.005 1.345 sum 5.365 -19.111 0.027 19.849 Atomic orbital electron populations 1.69972 1.06066 1.26522 1.51114 1.25037 0.94852 0.99267 0.95417 0.86591 0.79837 0.83461 0.78099 1.20658 1.21278 1.19875 1.21267 0.93067 0.91074 1.50234 0.92663 1.19071 0.94045 0.91416 0.97091 1.21613 0.99148 0.92966 1.00694 1.22129 0.94155 0.90891 0.99798 1.60494 1.20243 1.01089 1.49805 1.21277 0.93567 0.87843 1.00052 1.22503 0.99512 0.91460 0.99426 1.23170 1.01784 1.02543 0.91381 1.23301 0.99667 0.95744 0.99648 0.87594 1.21940 0.97905 0.97276 0.96072 1.22700 1.00707 0.94886 0.97930 1.21857 0.95409 0.99107 0.95574 0.93064 0.96600 0.96834 0.93690 0.92564 0.91571 0.95915 0.84474 0.91026 0.95625 0.88767 0.89160 0.91613 0.91728 0.91689 0.91404 0.92037 0.89401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.45 13.29 55.43 0.74 -26.71 16 2 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 6 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.52 -15.02 9.11 -34.44 -0.31 -15.34 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 9 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 10 C -0.11 -2.26 5.41 -26.73 -0.14 -2.40 16 11 C 0.06 1.05 5.69 -3.82 -0.02 1.03 16 12 N -0.69 -10.31 5.74 -113.78 -0.65 -10.96 16 13 C 0.10 1.33 5.96 -3.83 -0.02 1.31 16 14 C -0.13 -1.44 2.53 -153.29 -0.39 -1.83 16 15 C -0.15 -1.51 9.81 -26.73 -0.26 -1.77 16 16 C -0.16 -1.62 6.82 -89.50 -0.61 -2.23 16 17 H 0.11 1.01 8.14 -51.93 -0.42 0.58 16 18 C -0.09 -0.83 6.63 -25.07 -0.17 -1.00 16 19 C -0.12 -1.18 6.90 -24.74 -0.17 -1.35 16 20 C -0.08 -0.90 6.23 -24.97 -0.16 -1.06 16 21 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 22 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 23 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 24 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 26 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 27 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.34 4.87 8.73 -39.29 -0.34 4.53 16 29 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.03 0.33 8.04 -51.93 -0.42 -0.08 16 31 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.09 1.11 7.55 -51.93 -0.39 0.72 16 LS Contribution 307.89 15.07 4.64 4.64 Total: -1.00 -29.83 307.89 -9.82 -39.65 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -7.03 Total: -0.90 kcal Atomic # 6 Polarization: -20.21 SS G_CDS: -2.49 Total: -22.70 kcal Atomic # 7 Polarization: -37.76 SS G_CDS: 0.08 Total: -37.67 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -29.83 -9.82 -39.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693563229.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.514 kcal (2) G-P(sol) polarization free energy of solvation -29.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds