Wall clock time and date at job start Mon Mar 30 2020 02:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46725 * 239.99880 * 3 2 1 5 5 H 1.48505 * 109.46988 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47116 * 119.99856 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00461 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99611 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 N 1.46901 * 109.46769 * 180.02562 * 10 9 7 12 12 C 1.46906 * 110.99793 * 180.02562 * 11 10 9 13 13 C 1.52995 * 109.46978 * 180.02562 * 12 11 10 14 14 C 1.52312 * 115.91352 * 248.29082 * 13 12 11 15 15 C 1.52067 * 115.92984 * 180.02562 * 13 12 11 16 16 H 1.08997 * 117.25414 * 0.46317 * 15 13 12 17 17 C 1.52712 * 120.52344 * 210.73815 * 15 13 12 18 18 C 1.52880 * 110.15214 * 21.46899 * 17 15 13 19 19 C 1.53292 * 108.58035 * 305.47772 * 18 17 15 20 20 C 1.52076 * 114.64142 * 33.38185 * 13 12 11 21 21 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 23 23 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 24 24 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 25 25 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 26 26 H 1.00899 * 111.00283 * 303.95539 * 11 10 9 27 27 H 1.08995 * 109.47087 * 299.99901 * 12 11 10 28 28 H 1.09002 * 109.46903 * 59.99922 * 12 11 10 29 29 H 1.08999 * 117.53748 * 0.84703 * 14 13 12 30 30 H 1.08993 * 117.53833 * 146.09875 * 14 13 12 31 31 H 1.08999 * 109.35780 * 141.67737 * 17 15 13 32 32 H 1.09005 * 109.35815 * 261.39979 * 17 15 13 33 33 H 1.09000 * 109.61510 * 65.21183 * 18 17 15 34 34 H 1.09005 * 109.61728 * 185.56440 * 18 17 15 35 35 H 1.09001 * 109.61593 * 194.17385 * 19 18 17 36 36 H 1.09007 * 109.61986 * 314.53281 * 19 18 17 37 37 H 1.09004 * 109.26587 * 285.89840 * 20 13 12 38 38 H 1.08997 * 109.26775 * 45.35628 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6620 0.0015 11 7 1.5108 -4.9342 0.0020 12 6 2.4354 -6.0759 0.0024 13 6 1.6353 -7.3800 0.0022 14 6 1.7188 -8.2122 1.2752 15 6 2.4533 -8.6619 0.0032 16 1 3.5386 -8.5615 0.0118 17 6 1.9178 -9.9242 -0.6691 18 6 0.8496 -9.5591 -1.7000 19 6 -0.2280 -8.7157 -1.0091 20 6 0.3201 -7.3170 -0.7587 21 1 -0.4850 0.8400 -0.0004 22 1 0.6241 -2.5575 -0.8880 23 1 0.6247 -2.5564 0.8919 24 1 2.8714 -3.6047 -0.8890 25 1 2.8726 -3.6039 0.8910 26 1 0.8747 -4.9842 0.7836 27 1 3.0633 -6.0352 -0.8876 28 1 3.0634 -6.0345 0.8923 29 1 2.3227 -7.8214 2.0941 30 1 0.8318 -8.7729 1.5698 31 1 2.7369 -10.4440 -1.1661 32 1 1.4802 -10.5777 0.0857 33 1 1.3022 -8.9843 -2.5081 34 1 0.4039 -10.4686 -2.1030 35 1 -1.1108 -8.6570 -1.6458 36 1 -0.4942 -9.1718 -0.0555 37 1 -0.4049 -6.7475 -0.1771 38 1 0.4818 -6.8210 -1.7157 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693592647.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:34 Heat of formation + Delta-G solvation = -6.948546 kcal Electronic energy + Delta-G solvation = -15200.835268 eV Core-core repulsion = 12849.420801 eV Total energy + Delta-G solvation = -2351.414467 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.88604 -35.71498 -33.45637 -32.62843 -30.88369 -29.15593 -25.62833 -24.55391 -23.28946 -21.78390 -20.61349 -20.43504 -18.03009 -16.29952 -16.06944 -14.84206 -14.49589 -14.25223 -14.17776 -13.92224 -13.63240 -13.20668 -12.82416 -12.51664 -12.11678 -11.95841 -11.65385 -11.17529 -11.02373 -10.90211 -10.86516 -10.74665 -10.57350 -10.25763 -9.94824 -9.73309 -9.38809 -9.25391 -9.11292 -8.32774 -7.75695 -5.97475 -4.00045 3.34891 3.39073 3.41551 3.73697 4.43353 4.54548 4.72325 4.78763 4.92940 5.09690 5.12766 5.25969 5.35381 5.38356 5.49612 5.65779 5.69607 5.78738 5.81809 5.90338 5.94877 6.02297 6.17545 6.18467 6.25651 6.35960 6.38079 6.46804 6.48729 6.61443 7.01430 7.53262 7.76565 7.86248 8.00695 8.12080 8.46406 9.07066 9.63524 11.13941 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.061154 B = 0.004516 C = 0.004368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 457.748529 B = 6198.999901 C = 6408.050343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.053 0.947 9 C 0.026 3.974 10 C 0.065 3.935 11 N -0.686 5.686 12 C 0.091 3.909 13 C -0.096 4.096 14 C -0.186 4.186 15 C -0.146 4.146 16 H 0.097 0.903 17 C -0.086 4.086 18 C -0.119 4.119 19 C -0.124 4.124 20 C -0.068 4.068 21 H 0.261 0.739 22 H 0.025 0.975 23 H 0.013 0.987 24 H 0.057 0.943 25 H 0.013 0.987 26 H 0.336 0.664 27 H 0.069 0.931 28 H 0.023 0.977 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.058 0.942 35 H 0.062 0.938 36 H 0.057 0.943 37 H 0.070 0.930 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.200 -18.778 -0.344 18.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.561 4.561 8 H 0.071 0.929 9 C -0.011 4.011 10 C -0.063 4.063 11 N -0.316 5.316 12 C -0.039 4.039 13 C -0.096 4.096 14 C -0.223 4.223 15 C -0.165 4.165 16 H 0.116 0.884 17 C -0.123 4.123 18 C -0.156 4.156 19 C -0.161 4.161 20 C -0.105 4.105 21 H 0.071 0.929 22 H 0.044 0.956 23 H 0.031 0.969 24 H 0.076 0.924 25 H 0.031 0.969 26 H 0.153 0.847 27 H 0.087 0.913 28 H 0.041 0.959 29 H 0.106 0.894 30 H 0.110 0.890 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.088 0.912 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.969 -18.649 -1.024 18.781 hybrid contribution 0.910 1.006 1.053 1.717 sum 2.879 -17.643 0.029 17.876 Atomic orbital electron populations 1.69961 1.06026 1.26674 1.50617 1.24996 0.94833 0.99171 0.95305 0.86653 0.79572 0.83148 0.78581 1.20226 1.21257 1.20314 1.21152 0.92937 0.91083 1.50948 0.92861 1.19055 0.94008 0.90392 0.97685 1.22157 0.96983 0.88631 0.98504 1.60588 1.19670 1.01813 1.49560 1.21559 0.93656 0.88866 0.99803 1.21123 0.97840 0.91113 0.99528 1.23295 1.02649 1.04928 0.91408 1.22258 0.97828 0.95404 1.01000 0.88436 1.21012 0.98165 0.95263 0.97872 1.21552 0.96485 0.99489 0.98109 1.21560 0.97893 0.96459 1.00222 1.20497 0.93825 0.95598 1.00606 0.92950 0.95639 0.96853 0.92445 0.96856 0.84687 0.91289 0.95928 0.89364 0.89000 0.91978 0.92020 0.91620 0.92374 0.91919 0.92467 0.91162 0.90783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.22 13.29 55.43 0.74 -26.48 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.52 -15.07 9.11 -34.44 -0.31 -15.38 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.03 0.69 5.23 -27.88 -0.15 0.54 16 10 C 0.07 1.41 5.62 -3.82 -0.02 1.39 16 11 N -0.69 -12.46 5.58 -113.78 -0.63 -13.09 16 12 C 0.09 1.38 5.69 -3.82 -0.02 1.36 16 13 C -0.10 -1.23 2.38 -155.81 -0.37 -1.60 16 14 C -0.19 -2.14 9.22 -26.77 -0.25 -2.39 16 15 C -0.15 -1.63 5.82 -90.93 -0.53 -2.16 16 16 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 17 C -0.09 -0.82 5.83 -26.94 -0.16 -0.98 16 18 C -0.12 -1.16 5.93 -26.64 -0.16 -1.32 16 19 C -0.12 -1.32 5.67 -26.93 -0.15 -1.47 16 20 C -0.07 -0.88 4.64 -27.56 -0.13 -1.01 16 21 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 22 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 24 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 25 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.34 5.98 8.67 -39.29 -0.34 5.64 16 27 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 28 H 0.02 0.34 7.77 -51.93 -0.40 -0.06 16 29 H 0.09 1.01 7.94 -51.93 -0.41 0.60 16 30 H 0.09 1.00 7.27 -51.93 -0.38 0.62 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.56 8.06 -51.93 -0.42 0.14 16 33 H 0.07 0.69 8.06 -51.93 -0.42 0.27 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.59 7.12 -51.92 -0.37 0.22 16 37 H 0.07 0.97 8.01 -51.93 -0.42 0.55 16 38 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 300.71 15.07 4.53 4.53 Total: -1.00 -29.53 300.71 -9.66 -39.18 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -6.93 Total: 0.41 kcal Atomic # 6 Polarization: -19.07 SS G_CDS: -2.34 Total: -21.42 kcal Atomic # 7 Polarization: -39.68 SS G_CDS: 0.10 Total: -39.58 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -29.53 -9.66 -39.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693592647.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.236 kcal (2) G-P(sol) polarization free energy of solvation -29.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds