Wall clock time and date at job start Mon Mar 30 2020 02:53:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31511 * 1
3 3 Si 1.86803 * 119.99930 * 2 1
4 4 H 1.48506 * 109.46725 * 239.99880 * 3 2 1
5 5 H 1.48505 * 109.46988 * 359.97438 * 3 2 1
6 6 H 1.48494 * 109.47116 * 119.99856 * 3 2 1
7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3
8 8 H 1.07996 * 120.00461 * 180.02562 * 7 2 1
9 9 C 1.50706 * 119.99611 * 359.97438 * 7 2 1
10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2
11 11 N 1.46901 * 109.46769 * 180.02562 * 10 9 7
12 12 C 1.46906 * 110.99793 * 180.02562 * 11 10 9
13 13 C 1.52995 * 109.46978 * 180.02562 * 12 11 10
14 14 C 1.52312 * 115.91352 * 248.29082 * 13 12 11
15 15 C 1.52067 * 115.92984 * 180.02562 * 13 12 11
16 16 H 1.08997 * 117.25414 * 0.46317 * 15 13 12
17 17 C 1.52712 * 120.52344 * 210.73815 * 15 13 12
18 18 C 1.52880 * 110.15214 * 21.46899 * 17 15 13
19 19 C 1.53292 * 108.58035 * 305.47772 * 18 17 15
20 20 C 1.52076 * 114.64142 * 33.38185 * 13 12 11
21 21 H 0.97000 * 120.00354 * 0.02562 * 1 2 3
22 22 H 1.09001 * 109.46797 * 60.00256 * 9 7 2
23 23 H 1.08992 * 109.47518 * 300.00254 * 9 7 2
24 24 H 1.09002 * 109.47398 * 300.00410 * 10 9 7
25 25 H 1.09001 * 109.47194 * 60.00591 * 10 9 7
26 26 H 1.00899 * 111.00283 * 303.95539 * 11 10 9
27 27 H 1.08995 * 109.47087 * 299.99901 * 12 11 10
28 28 H 1.09002 * 109.46903 * 59.99922 * 12 11 10
29 29 H 1.08999 * 117.53748 * 0.84703 * 14 13 12
30 30 H 1.08993 * 117.53833 * 146.09875 * 14 13 12
31 31 H 1.08999 * 109.35780 * 141.67737 * 17 15 13
32 32 H 1.09005 * 109.35815 * 261.39979 * 17 15 13
33 33 H 1.09000 * 109.61510 * 65.21183 * 18 17 15
34 34 H 1.09005 * 109.61728 * 185.56440 * 18 17 15
35 35 H 1.09001 * 109.61593 * 194.17385 * 19 18 17
36 36 H 1.09007 * 109.61986 * 314.53281 * 19 18 17
37 37 H 1.09004 * 109.26587 * 285.89840 * 20 13 12
38 38 H 1.08997 * 109.26775 * 45.35628 * 20 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 3.1029 1.6963 -1.2126
5 1 1.2840 2.7465 -0.0006
6 1 3.1028 1.6965 1.2125
7 6 2.0046 -1.1940 0.0005
8 1 3.0845 -1.1941 0.0010
9 6 1.2510 -2.4992 0.0017
10 6 2.2453 -3.6620 0.0015
11 7 1.5108 -4.9342 0.0020
12 6 2.4354 -6.0759 0.0024
13 6 1.6353 -7.3800 0.0022
14 6 1.7188 -8.2122 1.2752
15 6 2.4533 -8.6619 0.0032
16 1 3.5386 -8.5615 0.0118
17 6 1.9178 -9.9242 -0.6691
18 6 0.8496 -9.5591 -1.7000
19 6 -0.2280 -8.7157 -1.0091
20 6 0.3201 -7.3170 -0.7587
21 1 -0.4850 0.8400 -0.0004
22 1 0.6241 -2.5575 -0.8880
23 1 0.6247 -2.5564 0.8919
24 1 2.8714 -3.6047 -0.8890
25 1 2.8726 -3.6039 0.8910
26 1 0.8747 -4.9842 0.7836
27 1 3.0633 -6.0352 -0.8876
28 1 3.0634 -6.0345 0.8923
29 1 2.3227 -7.8214 2.0941
30 1 0.8318 -8.7729 1.5698
31 1 2.7369 -10.4440 -1.1661
32 1 1.4802 -10.5777 0.0857
33 1 1.3022 -8.9843 -2.5081
34 1 0.4039 -10.4686 -2.1030
35 1 -1.1108 -8.6570 -1.6458
36 1 -0.4942 -9.1718 -0.0555
37 1 -0.4049 -6.7475 -0.1771
38 1 0.4818 -6.8210 -1.7157
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000693592647.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:53:34
Heat of formation + Delta-G solvation = -23.561729 kcal
Electronic energy + Delta-G solvation = -15201.555670 eV
Core-core repulsion = 12849.420801 eV
Total energy + Delta-G solvation = -2352.134868 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 223.163 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-40.84990 -37.28329 -35.11572 -34.03397 -32.10272 -30.79625 -27.27876 -25.47309
-25.02684 -22.81344 -22.25020 -21.54456 -18.98617 -18.50192 -17.31749 -16.48460
-16.13451 -15.56035 -15.20270 -14.92847 -14.70491 -14.56171 -14.21778 -14.04196
-13.74378 -13.14967 -12.98909 -12.80282 -12.65554 -12.44163 -12.10361 -11.97641
-11.74223 -11.59544 -11.48002 -11.33999 -11.06468 -10.57207 -10.53380 -10.31063
-9.27856 -8.20652 -6.32624 1.39912 1.43444 1.51435 2.40224 2.78070
3.12554 3.32054 3.73395 3.91577 3.96564 4.03697 4.20975 4.36376
4.39448 4.49576 4.53923 4.63120 4.71794 4.73522 4.84196 4.87769
4.96503 5.05347 5.07763 5.13676 5.28230 5.32963 5.39704 5.43189
5.45545 5.54637 5.58873 5.66515 5.78067 6.13905 6.27957 6.53155
6.84248 7.36683 8.91368
Molecular weight = 223.16amu
Principal moments of inertia in cm(-1)
A = 0.061154 B = 0.004516 C = 0.004368
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 457.748529 B = 6198.999901 C = 6408.050343
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.931 5.931
2 C 0.002 3.998
3 Si 0.968 3.032
4 H -0.267 1.267
5 H -0.282 1.282
6 H -0.266 1.266
7 C -0.548 4.548
8 H 0.060 0.940
9 C 0.033 3.967
10 C 0.084 3.916
11 N -0.689 5.689
12 C 0.094 3.906
13 C -0.113 4.113
14 C -0.179 4.179
15 C -0.135 4.135
16 H 0.102 0.898
17 C -0.085 4.085
18 C -0.117 4.117
19 C -0.120 4.120
20 C -0.065 4.065
21 H 0.264 0.736
22 H -0.006 1.006
23 H -0.009 1.009
24 H 0.056 0.944
25 H 0.016 0.984
26 H 0.337 0.663
27 H 0.065 0.935
28 H 0.027 0.973
29 H 0.088 0.912
30 H 0.101 0.899
31 H 0.075 0.925
32 H 0.073 0.927
33 H 0.055 0.945
34 H 0.076 0.924
35 H 0.066 0.934
36 H 0.065 0.935
37 H 0.053 0.947
38 H 0.052 0.948
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.348 -19.826 -0.136 20.107
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.571 5.571
2 C -0.196 4.196
3 Si 0.792 3.208
4 H -0.192 1.192
5 H -0.207 1.207
6 H -0.191 1.191
7 C -0.586 4.586
8 H 0.078 0.922
9 C -0.004 4.004
10 C -0.045 4.045
11 N -0.319 5.319
12 C -0.035 4.035
13 C -0.113 4.113
14 C -0.216 4.216
15 C -0.153 4.153
16 H 0.120 0.880
17 C -0.122 4.122
18 C -0.155 4.155
19 C -0.158 4.158
20 C -0.102 4.102
21 H 0.073 0.927
22 H 0.013 0.987
23 H 0.009 0.991
24 H 0.074 0.926
25 H 0.034 0.966
26 H 0.155 0.845
27 H 0.083 0.917
28 H 0.045 0.955
29 H 0.107 0.893
30 H 0.119 0.881
31 H 0.094 0.906
32 H 0.091 0.909
33 H 0.073 0.927
34 H 0.095 0.905
35 H 0.085 0.915
36 H 0.083 0.917
37 H 0.072 0.928
38 H 0.070 0.930
Dipole moment (debyes) X Y Z Total
from point charges 3.127 -19.722 -0.816 19.985
hybrid contribution 0.517 1.301 0.984 1.711
sum 3.644 -18.421 0.168 18.779
Atomic orbital electron populations
1.70100 1.07849 1.27913 1.51268 1.25980 0.95770 1.03383 0.94514
0.85466 0.78251 0.77907 0.79198 1.19156 1.20680 1.19122 1.21590
0.93514 0.92305 1.51207 0.92215 1.18901 0.94257 0.92245 0.95020
1.21778 0.95615 0.88615 0.98519 1.60494 1.20124 1.01467 1.49815
1.21581 0.93428 0.88772 0.99742 1.21003 0.98036 0.90798 1.01457
1.23342 1.03062 1.04120 0.91081 1.22372 0.97925 0.94731 1.00320
0.87999 1.21059 0.98557 0.94533 0.98053 1.21546 0.96240 0.99860
0.97824 1.21534 0.98323 0.95016 1.00879 1.20419 0.93776 0.96885
0.99169 0.92692 0.98735 0.99087 0.92557 0.96559 0.84515 0.91705
0.95457 0.89305 0.88067 0.90604 0.90868 0.92665 0.90545 0.91532
0.91674 0.92789 0.92963
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -57.72 13.29 21.45 0.28 -57.43 16
2 C 0.00 0.09 5.46 84.66 0.46 0.56 16
3 Si 0.97 44.79 29.54 68.60 2.03 46.81 16
4 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16
5 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16
6 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16
7 C -0.55 -32.00 9.11 25.60 0.23 -31.76 16
8 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16
9 C 0.03 1.83 5.23 29.85 0.16 1.98 16
10 C 0.08 3.67 5.62 86.30 0.49 4.15 16
11 N -0.69 -25.46 5.58 -513.88 -2.87 -28.33 16
12 C 0.09 2.82 5.69 86.30 0.49 3.31 16
13 C -0.11 -2.80 2.38 -53.02 -0.13 -2.92 16
14 C -0.18 -3.78 9.22 30.57 0.28 -3.50 16
15 C -0.13 -2.71 5.82 -10.99 -0.06 -2.77 16
16 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16
17 C -0.08 -1.38 5.83 30.46 0.18 -1.20 16
18 C -0.12 -2.04 5.93 30.65 0.18 -1.86 16
19 C -0.12 -2.39 5.67 30.46 0.17 -2.22 16
20 C -0.06 -1.67 4.64 30.06 0.14 -1.54 16
21 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16
22 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16
23 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16
24 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16
25 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16
26 H 0.34 12.32 8.67 -89.69 -0.78 11.54 16
27 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16
28 H 0.03 0.80 7.77 -2.39 -0.02 0.78 16
29 H 0.09 1.88 7.94 -2.39 -0.02 1.86 16
30 H 0.10 1.96 7.27 -2.39 -0.02 1.94 16
31 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16
32 H 0.07 1.06 8.06 -2.38 -0.02 1.04 16
33 H 0.05 1.08 8.06 -2.39 -0.02 1.06 16
34 H 0.08 1.07 8.14 -2.38 -0.02 1.06 16
35 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16
36 H 0.06 1.20 7.12 -2.38 -0.02 1.19 16
37 H 0.05 1.53 8.01 -2.39 -0.02 1.51 16
38 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16
Total: -1.00 -63.40 300.71 2.26 -61.14
By element:
Atomic # 1 Polarization: 15.36 SS G_CDS: 0.23 Total: 15.58 kcal
Atomic # 6 Polarization: -40.37 SS G_CDS: 2.59 Total: -37.77 kcal
Atomic # 7 Polarization: -83.18 SS G_CDS: -2.58 Total: -85.76 kcal
Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.81 kcal
Total: -63.40 2.26 -61.14 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000693592647.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 37.579 kcal
(2) G-P(sol) polarization free energy of solvation -63.403 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.823 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.262 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.141 kcal
(6) G-S(sol) free energy of system = (1) + (5) -23.562 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds