Wall clock time and date at job start Mon Mar 30 2020 02:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46725 * 239.99880 * 3 2 1 5 5 H 1.48505 * 109.46988 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47116 * 119.99856 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00461 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99611 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 N 1.46901 * 109.46769 * 180.02562 * 10 9 7 12 12 C 1.46906 * 110.99793 * 180.02562 * 11 10 9 13 13 C 1.52995 * 109.46978 * 180.02562 * 12 11 10 14 14 C 1.52312 * 115.91352 * 248.29082 * 13 12 11 15 15 C 1.52067 * 115.92984 * 180.02562 * 13 12 11 16 16 H 1.08997 * 117.25414 * 0.46317 * 15 13 12 17 17 C 1.52712 * 120.52344 * 210.73815 * 15 13 12 18 18 C 1.52880 * 110.15214 * 21.46899 * 17 15 13 19 19 C 1.53292 * 108.58035 * 305.47772 * 18 17 15 20 20 C 1.52076 * 114.64142 * 33.38185 * 13 12 11 21 21 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 23 23 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 24 24 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 25 25 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 26 26 H 1.00899 * 111.00283 * 303.95539 * 11 10 9 27 27 H 1.08995 * 109.47087 * 299.99901 * 12 11 10 28 28 H 1.09002 * 109.46903 * 59.99922 * 12 11 10 29 29 H 1.08999 * 117.53748 * 0.84703 * 14 13 12 30 30 H 1.08993 * 117.53833 * 146.09875 * 14 13 12 31 31 H 1.08999 * 109.35780 * 141.67737 * 17 15 13 32 32 H 1.09005 * 109.35815 * 261.39979 * 17 15 13 33 33 H 1.09000 * 109.61510 * 65.21183 * 18 17 15 34 34 H 1.09005 * 109.61728 * 185.56440 * 18 17 15 35 35 H 1.09001 * 109.61593 * 194.17385 * 19 18 17 36 36 H 1.09007 * 109.61986 * 314.53281 * 19 18 17 37 37 H 1.09004 * 109.26587 * 285.89840 * 20 13 12 38 38 H 1.08997 * 109.26775 * 45.35628 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6620 0.0015 11 7 1.5108 -4.9342 0.0020 12 6 2.4354 -6.0759 0.0024 13 6 1.6353 -7.3800 0.0022 14 6 1.7188 -8.2122 1.2752 15 6 2.4533 -8.6619 0.0032 16 1 3.5386 -8.5615 0.0118 17 6 1.9178 -9.9242 -0.6691 18 6 0.8496 -9.5591 -1.7000 19 6 -0.2280 -8.7157 -1.0091 20 6 0.3201 -7.3170 -0.7587 21 1 -0.4850 0.8400 -0.0004 22 1 0.6241 -2.5575 -0.8880 23 1 0.6247 -2.5564 0.8919 24 1 2.8714 -3.6047 -0.8890 25 1 2.8726 -3.6039 0.8910 26 1 0.8747 -4.9842 0.7836 27 1 3.0633 -6.0352 -0.8876 28 1 3.0634 -6.0345 0.8923 29 1 2.3227 -7.8214 2.0941 30 1 0.8318 -8.7729 1.5698 31 1 2.7369 -10.4440 -1.1661 32 1 1.4802 -10.5777 0.0857 33 1 1.3022 -8.9843 -2.5081 34 1 0.4039 -10.4686 -2.1030 35 1 -1.1108 -8.6570 -1.6458 36 1 -0.4942 -9.1718 -0.0555 37 1 -0.4049 -6.7475 -0.1771 38 1 0.4818 -6.8210 -1.7157 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693592647.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:34 Heat of formation + Delta-G solvation = -23.561729 kcal Electronic energy + Delta-G solvation = -15201.555670 eV Core-core repulsion = 12849.420801 eV Total energy + Delta-G solvation = -2352.134868 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.84990 -37.28329 -35.11572 -34.03397 -32.10272 -30.79625 -27.27876 -25.47309 -25.02684 -22.81344 -22.25020 -21.54456 -18.98617 -18.50192 -17.31749 -16.48460 -16.13451 -15.56035 -15.20270 -14.92847 -14.70491 -14.56171 -14.21778 -14.04196 -13.74378 -13.14967 -12.98909 -12.80282 -12.65554 -12.44163 -12.10361 -11.97641 -11.74223 -11.59544 -11.48002 -11.33999 -11.06468 -10.57207 -10.53380 -10.31063 -9.27856 -8.20652 -6.32624 1.39912 1.43444 1.51435 2.40224 2.78070 3.12554 3.32054 3.73395 3.91577 3.96564 4.03697 4.20975 4.36376 4.39448 4.49576 4.53923 4.63120 4.71794 4.73522 4.84196 4.87769 4.96503 5.05347 5.07763 5.13676 5.28230 5.32963 5.39704 5.43189 5.45545 5.54637 5.58873 5.66515 5.78067 6.13905 6.27957 6.53155 6.84248 7.36683 8.91368 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.061154 B = 0.004516 C = 0.004368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 457.748529 B = 6198.999901 C = 6408.050343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.968 3.032 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.548 4.548 8 H 0.060 0.940 9 C 0.033 3.967 10 C 0.084 3.916 11 N -0.689 5.689 12 C 0.094 3.906 13 C -0.113 4.113 14 C -0.179 4.179 15 C -0.135 4.135 16 H 0.102 0.898 17 C -0.085 4.085 18 C -0.117 4.117 19 C -0.120 4.120 20 C -0.065 4.065 21 H 0.264 0.736 22 H -0.006 1.006 23 H -0.009 1.009 24 H 0.056 0.944 25 H 0.016 0.984 26 H 0.337 0.663 27 H 0.065 0.935 28 H 0.027 0.973 29 H 0.088 0.912 30 H 0.101 0.899 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.055 0.945 34 H 0.076 0.924 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.053 0.947 38 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.348 -19.826 -0.136 20.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.792 3.208 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.586 4.586 8 H 0.078 0.922 9 C -0.004 4.004 10 C -0.045 4.045 11 N -0.319 5.319 12 C -0.035 4.035 13 C -0.113 4.113 14 C -0.216 4.216 15 C -0.153 4.153 16 H 0.120 0.880 17 C -0.122 4.122 18 C -0.155 4.155 19 C -0.158 4.158 20 C -0.102 4.102 21 H 0.073 0.927 22 H 0.013 0.987 23 H 0.009 0.991 24 H 0.074 0.926 25 H 0.034 0.966 26 H 0.155 0.845 27 H 0.083 0.917 28 H 0.045 0.955 29 H 0.107 0.893 30 H 0.119 0.881 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.073 0.927 34 H 0.095 0.905 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.072 0.928 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.127 -19.722 -0.816 19.985 hybrid contribution 0.517 1.301 0.984 1.711 sum 3.644 -18.421 0.168 18.779 Atomic orbital electron populations 1.70100 1.07849 1.27913 1.51268 1.25980 0.95770 1.03383 0.94514 0.85466 0.78251 0.77907 0.79198 1.19156 1.20680 1.19122 1.21590 0.93514 0.92305 1.51207 0.92215 1.18901 0.94257 0.92245 0.95020 1.21778 0.95615 0.88615 0.98519 1.60494 1.20124 1.01467 1.49815 1.21581 0.93428 0.88772 0.99742 1.21003 0.98036 0.90798 1.01457 1.23342 1.03062 1.04120 0.91081 1.22372 0.97925 0.94731 1.00320 0.87999 1.21059 0.98557 0.94533 0.98053 1.21546 0.96240 0.99860 0.97824 1.21534 0.98323 0.95016 1.00879 1.20419 0.93776 0.96885 0.99169 0.92692 0.98735 0.99087 0.92557 0.96559 0.84515 0.91705 0.95457 0.89305 0.88067 0.90604 0.90868 0.92665 0.90545 0.91532 0.91674 0.92789 0.92963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.72 13.29 21.45 0.28 -57.43 16 2 C 0.00 0.09 5.46 84.66 0.46 0.56 16 3 Si 0.97 44.79 29.54 68.60 2.03 46.81 16 4 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 5 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 6 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 7 C -0.55 -32.00 9.11 25.60 0.23 -31.76 16 8 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 9 C 0.03 1.83 5.23 29.85 0.16 1.98 16 10 C 0.08 3.67 5.62 86.30 0.49 4.15 16 11 N -0.69 -25.46 5.58 -513.88 -2.87 -28.33 16 12 C 0.09 2.82 5.69 86.30 0.49 3.31 16 13 C -0.11 -2.80 2.38 -53.02 -0.13 -2.92 16 14 C -0.18 -3.78 9.22 30.57 0.28 -3.50 16 15 C -0.13 -2.71 5.82 -10.99 -0.06 -2.77 16 16 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 17 C -0.08 -1.38 5.83 30.46 0.18 -1.20 16 18 C -0.12 -2.04 5.93 30.65 0.18 -1.86 16 19 C -0.12 -2.39 5.67 30.46 0.17 -2.22 16 20 C -0.06 -1.67 4.64 30.06 0.14 -1.54 16 21 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 22 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 23 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 24 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 25 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.34 12.32 8.67 -89.69 -0.78 11.54 16 27 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 28 H 0.03 0.80 7.77 -2.39 -0.02 0.78 16 29 H 0.09 1.88 7.94 -2.39 -0.02 1.86 16 30 H 0.10 1.96 7.27 -2.39 -0.02 1.94 16 31 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.07 1.06 8.06 -2.38 -0.02 1.04 16 33 H 0.05 1.08 8.06 -2.39 -0.02 1.06 16 34 H 0.08 1.07 8.14 -2.38 -0.02 1.06 16 35 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.06 1.20 7.12 -2.38 -0.02 1.19 16 37 H 0.05 1.53 8.01 -2.39 -0.02 1.51 16 38 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -63.40 300.71 2.26 -61.14 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: 0.23 Total: 15.58 kcal Atomic # 6 Polarization: -40.37 SS G_CDS: 2.59 Total: -37.77 kcal Atomic # 7 Polarization: -83.18 SS G_CDS: -2.58 Total: -85.76 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.81 kcal Total: -63.40 2.26 -61.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693592647.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.579 kcal (2) G-P(sol) polarization free energy of solvation -63.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds