Wall clock time and date at job start Mon Mar 30 2020 02:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 119.99831 * 2 1 4 4 H 1.48504 * 109.47305 * 240.00167 * 3 2 1 5 5 H 1.48504 * 109.47291 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47280 * 119.99890 * 3 2 1 7 7 C 1.37872 * 120.00429 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00380 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99896 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47361 * 180.02562 * 9 7 2 11 11 N 1.46896 * 109.47121 * 180.02562 * 10 9 7 12 12 C 1.46899 * 110.99996 * 179.97438 * 11 10 9 13 13 C 1.52997 * 109.47389 * 179.97438 * 12 11 10 14 14 C 1.52302 * 115.29580 * 110.87833 * 13 12 11 15 15 C 1.52069 * 115.93401 * 178.96637 * 13 12 11 16 16 H 1.09007 * 117.24922 * 1.37405 * 15 13 12 17 17 C 1.52709 * 120.52753 * 149.99829 * 15 13 12 18 18 C 1.52770 * 110.28066 * 338.64675 * 17 15 13 19 19 C 1.53301 * 108.63811 * 54.24578 * 18 17 15 20 20 C 1.52074 * 114.63547 * 325.57547 * 13 12 11 21 21 H 0.96996 * 120.00513 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.47167 * 59.99717 * 9 7 2 23 23 H 1.09002 * 109.47107 * 299.99776 * 9 7 2 24 24 H 1.08991 * 109.47366 * 59.99077 * 10 9 7 25 25 H 1.09004 * 109.46670 * 299.99357 * 10 9 7 26 26 H 1.00902 * 111.00027 * 303.94572 * 11 10 9 27 27 H 1.09002 * 109.47652 * 59.99229 * 12 11 10 28 28 H 1.09001 * 109.46927 * 299.99491 * 12 11 10 29 29 H 1.09003 * 117.53656 * 214.17786 * 14 13 12 30 30 H 1.08995 * 117.53487 * 359.42940 * 14 13 12 31 31 H 1.09005 * 109.35389 * 98.73945 * 17 15 13 32 32 H 1.08994 * 109.35722 * 218.31722 * 17 15 13 33 33 H 1.08998 * 109.44783 * 294.58151 * 18 17 15 34 34 H 1.09000 * 109.72940 * 174.07452 * 18 17 15 35 35 H 1.09002 * 109.61781 * 165.99754 * 19 18 17 36 36 H 1.08998 * 109.61503 * 45.63894 * 19 18 17 37 37 H 1.09001 * 109.26583 * 72.88984 * 20 13 12 38 38 H 1.09004 * 109.24089 * 313.41131 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0018 11 7 1.5109 -4.9342 0.0012 12 6 2.4354 -6.0758 0.0018 13 6 1.6354 -7.3800 0.0018 14 6 1.7140 -8.1916 -1.2846 15 6 2.4532 -8.6618 -0.0223 16 1 3.5386 -8.5616 -0.0144 17 6 1.9200 -9.9345 0.6318 18 6 0.8537 -9.5896 1.6700 19 6 -0.2245 -8.7314 0.9985 20 6 0.3317 -7.3240 0.7827 21 1 -0.4851 0.8400 -0.0004 22 1 0.6247 -2.5571 -0.8897 23 1 0.6241 -2.5567 0.8903 24 1 2.8714 -3.6038 0.8921 25 1 2.8726 -3.6047 -0.8878 26 1 0.8737 -4.9842 0.7820 27 1 3.0629 -6.0349 0.8922 28 1 3.0640 -6.0348 -0.8878 29 1 0.8256 -8.7474 -1.5848 30 1 2.3147 -7.7876 -2.0994 31 1 1.4819 -10.5770 -0.1321 32 1 2.7407 -10.4622 1.1175 33 1 1.3101 -9.0306 2.4870 34 1 0.4053 -10.5053 2.0553 35 1 -1.1051 -8.6827 1.6391 36 1 -0.4948 -9.1693 0.0376 37 1 -0.3951 -6.7312 0.2273 38 1 0.5126 -6.8564 1.7506 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693592649.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:36 Heat of formation + Delta-G solvation = -6.438753 kcal Electronic energy + Delta-G solvation = -15203.848943 eV Core-core repulsion = 12852.456583 eV Total energy + Delta-G solvation = -2351.392360 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.90295 -35.72202 -33.47173 -32.66868 -30.91615 -29.14505 -25.59991 -24.69080 -23.25664 -21.82378 -20.63943 -20.41161 -18.06951 -16.29530 -15.90642 -15.20209 -14.44512 -14.30873 -14.20139 -13.89283 -13.55994 -13.22741 -12.87400 -12.58997 -12.01816 -12.00903 -11.62964 -11.23668 -11.07735 -10.92650 -10.89398 -10.75018 -10.56024 -10.24829 -10.00601 -9.73473 -9.41737 -9.27169 -9.10865 -8.32612 -7.72756 -5.97365 -3.99974 3.34985 3.39156 3.41634 3.75019 4.44498 4.54748 4.71319 4.76232 4.87678 5.08422 5.14021 5.25978 5.30891 5.38422 5.44472 5.58684 5.63678 5.80294 5.82730 5.88625 5.96214 5.97441 6.11114 6.15160 6.24995 6.30820 6.35886 6.37769 6.45767 6.48756 7.01439 7.53297 7.76249 7.86519 8.00825 8.12084 8.46457 9.07086 9.63601 11.14084 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.061600 B = 0.004511 C = 0.004362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 454.439103 B = 6205.041309 C = 6417.415835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.053 0.947 9 C 0.026 3.974 10 C 0.065 3.935 11 N -0.688 5.688 12 C 0.091 3.909 13 C -0.096 4.096 14 C -0.171 4.171 15 C -0.152 4.152 16 H 0.098 0.902 17 C -0.086 4.086 18 C -0.119 4.119 19 C -0.121 4.121 20 C -0.081 4.081 21 H 0.261 0.739 22 H 0.025 0.975 23 H 0.013 0.987 24 H 0.014 0.986 25 H 0.057 0.943 26 H 0.336 0.664 27 H 0.024 0.976 28 H 0.067 0.933 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.078 0.922 38 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.189 -18.896 1.777 19.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.561 4.561 8 H 0.072 0.928 9 C -0.012 4.012 10 C -0.063 4.063 11 N -0.320 5.320 12 C -0.039 4.039 13 C -0.096 4.096 14 C -0.208 4.208 15 C -0.171 4.171 16 H 0.116 0.884 17 C -0.124 4.124 18 C -0.157 4.157 19 C -0.158 4.158 20 C -0.119 4.119 21 H 0.071 0.929 22 H 0.044 0.956 23 H 0.031 0.969 24 H 0.032 0.968 25 H 0.075 0.925 26 H 0.154 0.846 27 H 0.042 0.958 28 H 0.086 0.914 29 H 0.109 0.891 30 H 0.110 0.890 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.097 0.903 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.959 -18.767 1.085 18.900 hybrid contribution 0.894 1.026 0.837 1.597 sum 2.853 -17.742 1.921 18.072 Atomic orbital electron populations 1.69960 1.06029 1.26680 1.50616 1.24994 0.94836 0.99177 0.95304 0.86650 0.79566 0.83132 0.78582 1.20233 1.21259 1.20303 1.21150 0.92941 0.91070 1.50948 0.92847 1.19060 0.94014 0.90404 0.97683 1.22159 0.97006 0.88640 0.98518 1.60592 1.19685 1.01833 1.49863 1.21568 0.93654 0.88857 0.99796 1.21023 0.97377 0.91219 1.00014 1.23209 1.02266 1.04047 0.91237 1.22295 0.97897 0.95070 1.01811 0.88422 1.20996 0.98124 0.95334 0.97910 1.21548 0.96511 0.99497 0.98146 1.21608 0.97788 0.95845 1.00599 1.20749 0.94994 0.96623 0.99488 0.92946 0.95639 0.96861 0.96799 0.92472 0.84560 0.95825 0.91424 0.89079 0.89046 0.91964 0.92012 0.91804 0.92260 0.91895 0.92017 0.90305 0.91840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.26 13.29 55.43 0.74 -26.52 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.92 29.54 -169.99 -5.02 16.89 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.52 -15.10 9.11 -34.44 -0.31 -15.42 16 8 H 0.05 1.49 7.74 -52.48 -0.41 1.09 16 9 C 0.03 0.69 5.23 -27.88 -0.15 0.54 16 10 C 0.06 1.42 5.62 -3.83 -0.02 1.39 16 11 N -0.69 -12.72 6.22 -113.78 -0.71 -13.43 16 12 C 0.09 1.40 5.72 -3.83 -0.02 1.38 16 13 C -0.10 -1.24 2.45 -155.81 -0.38 -1.62 16 14 C -0.17 -2.04 9.22 -26.75 -0.25 -2.28 16 15 C -0.15 -1.69 5.83 -90.90 -0.53 -2.22 16 16 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 17 C -0.09 -0.82 5.83 -27.00 -0.16 -0.97 16 18 C -0.12 -1.13 5.93 -26.69 -0.16 -1.29 16 19 C -0.12 -1.24 5.69 -26.64 -0.15 -1.39 16 20 C -0.08 -1.01 4.14 -27.27 -0.11 -1.12 16 21 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 22 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 24 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 25 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 26 H 0.34 6.00 7.06 -39.29 -0.28 5.72 16 27 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.07 1.05 7.72 -51.93 -0.40 0.65 16 29 H 0.09 1.03 7.27 -51.93 -0.38 0.65 16 30 H 0.09 1.10 7.91 -51.93 -0.41 0.69 16 31 H 0.06 0.56 8.06 -51.93 -0.42 0.14 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.64 8.05 -51.93 -0.42 0.22 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.63 7.12 -51.93 -0.37 0.26 16 37 H 0.08 1.07 7.93 -51.93 -0.41 0.66 16 38 H 0.06 0.80 7.78 -51.93 -0.40 0.39 16 LS Contribution 298.81 15.07 4.50 4.50 Total: -1.00 -29.87 298.81 -9.66 -39.53 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -6.83 Total: 0.43 kcal Atomic # 6 Polarization: -19.07 SS G_CDS: -2.34 Total: -21.41 kcal Atomic # 7 Polarization: -39.98 SS G_CDS: 0.03 Total: -39.95 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.87 -9.66 -39.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693592649.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.096 kcal (2) G-P(sol) polarization free energy of solvation -29.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds