Wall clock time and date at job start Mon Mar 30 2020 02:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 119.99831 * 2 1 4 4 H 1.48504 * 109.47305 * 240.00167 * 3 2 1 5 5 H 1.48504 * 109.47291 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47280 * 119.99890 * 3 2 1 7 7 C 1.37872 * 120.00429 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00380 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99896 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47361 * 180.02562 * 9 7 2 11 11 N 1.46896 * 109.47121 * 180.02562 * 10 9 7 12 12 C 1.46899 * 110.99996 * 179.97438 * 11 10 9 13 13 C 1.52997 * 109.47389 * 179.97438 * 12 11 10 14 14 C 1.52302 * 115.29580 * 110.87833 * 13 12 11 15 15 C 1.52069 * 115.93401 * 178.96637 * 13 12 11 16 16 H 1.09007 * 117.24922 * 1.37405 * 15 13 12 17 17 C 1.52709 * 120.52753 * 149.99829 * 15 13 12 18 18 C 1.52770 * 110.28066 * 338.64675 * 17 15 13 19 19 C 1.53301 * 108.63811 * 54.24578 * 18 17 15 20 20 C 1.52074 * 114.63547 * 325.57547 * 13 12 11 21 21 H 0.96996 * 120.00513 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.47167 * 59.99717 * 9 7 2 23 23 H 1.09002 * 109.47107 * 299.99776 * 9 7 2 24 24 H 1.08991 * 109.47366 * 59.99077 * 10 9 7 25 25 H 1.09004 * 109.46670 * 299.99357 * 10 9 7 26 26 H 1.00902 * 111.00027 * 303.94572 * 11 10 9 27 27 H 1.09002 * 109.47652 * 59.99229 * 12 11 10 28 28 H 1.09001 * 109.46927 * 299.99491 * 12 11 10 29 29 H 1.09003 * 117.53656 * 214.17786 * 14 13 12 30 30 H 1.08995 * 117.53487 * 359.42940 * 14 13 12 31 31 H 1.09005 * 109.35389 * 98.73945 * 17 15 13 32 32 H 1.08994 * 109.35722 * 218.31722 * 17 15 13 33 33 H 1.08998 * 109.44783 * 294.58151 * 18 17 15 34 34 H 1.09000 * 109.72940 * 174.07452 * 18 17 15 35 35 H 1.09002 * 109.61781 * 165.99754 * 19 18 17 36 36 H 1.08998 * 109.61503 * 45.63894 * 19 18 17 37 37 H 1.09001 * 109.26583 * 72.88984 * 20 13 12 38 38 H 1.09004 * 109.24089 * 313.41131 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0018 11 7 1.5109 -4.9342 0.0012 12 6 2.4354 -6.0758 0.0018 13 6 1.6354 -7.3800 0.0018 14 6 1.7140 -8.1916 -1.2846 15 6 2.4532 -8.6618 -0.0223 16 1 3.5386 -8.5616 -0.0144 17 6 1.9200 -9.9345 0.6318 18 6 0.8537 -9.5896 1.6700 19 6 -0.2245 -8.7314 0.9985 20 6 0.3317 -7.3240 0.7827 21 1 -0.4851 0.8400 -0.0004 22 1 0.6247 -2.5571 -0.8897 23 1 0.6241 -2.5567 0.8903 24 1 2.8714 -3.6038 0.8921 25 1 2.8726 -3.6047 -0.8878 26 1 0.8737 -4.9842 0.7820 27 1 3.0629 -6.0349 0.8922 28 1 3.0640 -6.0348 -0.8878 29 1 0.8256 -8.7474 -1.5848 30 1 2.3147 -7.7876 -2.0994 31 1 1.4819 -10.5770 -0.1321 32 1 2.7407 -10.4622 1.1175 33 1 1.3101 -9.0306 2.4870 34 1 0.4053 -10.5053 2.0553 35 1 -1.1051 -8.6827 1.6391 36 1 -0.4948 -9.1693 0.0376 37 1 -0.3951 -6.7312 0.2273 38 1 0.5126 -6.8564 1.7506 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693592649.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:36 Heat of formation + Delta-G solvation = -23.535685 kcal Electronic energy + Delta-G solvation = -15204.590322 eV Core-core repulsion = 12852.456583 eV Total energy + Delta-G solvation = -2352.133739 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.86391 -37.29350 -35.11674 -34.06399 -32.14677 -30.77135 -27.27131 -25.58110 -25.01321 -22.82616 -22.22794 -21.57861 -19.00353 -18.50446 -17.13585 -16.53048 -16.43925 -15.57286 -15.15571 -14.93492 -14.71546 -14.40658 -14.27396 -14.20289 -13.67327 -13.24039 -12.94333 -12.78412 -12.56168 -12.48057 -12.19952 -11.94923 -11.77669 -11.63907 -11.47385 -11.34490 -11.06628 -10.58009 -10.53921 -10.37352 -9.25011 -8.20814 -6.32906 1.39932 1.43505 1.51498 2.40124 2.76801 3.12363 3.38751 3.71934 3.84163 3.94192 4.05715 4.20350 4.36663 4.37184 4.46757 4.52364 4.61812 4.67604 4.74384 4.81576 4.85150 4.96525 5.04400 5.06384 5.11295 5.28275 5.29464 5.33601 5.41652 5.43160 5.48568 5.54929 5.65351 5.77324 6.13029 6.27170 6.52508 6.83792 7.36443 8.91264 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.061600 B = 0.004511 C = 0.004362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 454.439103 B = 6205.041309 C = 6417.415835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.968 3.032 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.548 4.548 8 H 0.060 0.940 9 C 0.033 3.967 10 C 0.083 3.917 11 N -0.693 5.693 12 C 0.093 3.907 13 C -0.112 4.112 14 C -0.172 4.172 15 C -0.136 4.136 16 H 0.102 0.898 17 C -0.086 4.086 18 C -0.117 4.117 19 C -0.117 4.117 20 C -0.080 4.080 21 H 0.264 0.736 22 H -0.006 1.006 23 H -0.009 1.009 24 H 0.017 0.983 25 H 0.056 0.944 26 H 0.339 0.661 27 H 0.026 0.974 28 H 0.066 0.934 29 H 0.099 0.901 30 H 0.087 0.913 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.057 0.943 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.059 0.941 38 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.310 -19.865 2.040 20.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.792 3.208 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.586 4.586 8 H 0.078 0.922 9 C -0.005 4.005 10 C -0.046 4.046 11 N -0.324 5.324 12 C -0.036 4.036 13 C -0.113 4.113 14 C -0.209 4.209 15 C -0.155 4.155 16 H 0.120 0.880 17 C -0.123 4.123 18 C -0.155 4.155 19 C -0.155 4.155 20 C -0.118 4.118 21 H 0.073 0.927 22 H 0.012 0.988 23 H 0.009 0.991 24 H 0.035 0.965 25 H 0.075 0.925 26 H 0.157 0.843 27 H 0.044 0.956 28 H 0.084 0.916 29 H 0.117 0.883 30 H 0.106 0.894 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.075 0.925 34 H 0.096 0.904 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.077 0.923 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.089 -19.761 1.349 20.046 hybrid contribution 0.511 1.294 0.746 1.579 sum 3.600 -18.467 2.095 18.931 Atomic orbital electron populations 1.70099 1.07857 1.27932 1.51244 1.25982 0.95777 1.03400 0.94494 0.85458 0.78244 0.77866 0.79205 1.19167 1.20669 1.19091 1.21584 0.93524 0.92270 1.51244 0.92184 1.18908 0.94264 0.92273 0.95018 1.21788 0.95661 0.88614 0.98568 1.60508 1.20186 1.01543 1.50202 1.21602 0.93441 0.88787 0.99760 1.20963 0.97899 0.90837 1.01574 1.23261 1.02776 1.03805 0.91072 1.22393 0.97947 0.94500 1.00639 0.87992 1.21048 0.98643 0.94463 0.98155 1.21542 0.96165 0.99935 0.97835 1.21591 0.98347 0.94452 1.01104 1.20706 0.94445 0.97920 0.98687 0.92678 0.98765 0.99070 0.96476 0.92545 0.84283 0.95582 0.91577 0.88311 0.89419 0.90999 0.90587 0.92468 0.90447 0.91190 0.91694 0.92268 0.92530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.76 13.29 21.44 0.28 -57.48 16 2 C 0.00 0.09 5.46 84.65 0.46 0.55 16 3 Si 0.97 44.81 29.54 68.60 2.03 46.83 16 4 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 5 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 6 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 7 C -0.55 -32.06 9.11 25.60 0.23 -31.83 16 8 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 9 C 0.03 1.81 5.23 29.85 0.16 1.97 16 10 C 0.08 3.65 5.62 86.30 0.49 4.14 16 11 N -0.69 -26.00 6.22 -513.90 -3.20 -29.20 16 12 C 0.09 2.83 5.72 86.30 0.49 3.32 16 13 C -0.11 -2.82 2.45 -53.03 -0.13 -2.95 16 14 C -0.17 -3.88 9.22 30.58 0.28 -3.59 16 15 C -0.14 -2.75 5.83 -10.98 -0.06 -2.82 16 16 H 0.10 1.99 8.14 -2.38 -0.02 1.97 16 17 C -0.09 -1.37 5.83 30.42 0.18 -1.20 16 18 C -0.12 -1.92 5.93 30.62 0.18 -1.74 16 19 C -0.12 -2.23 5.69 30.65 0.17 -2.05 16 20 C -0.08 -1.96 4.14 30.25 0.13 -1.83 16 21 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 22 H -0.01 -0.37 8.14 -2.38 -0.02 -0.39 16 23 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 24 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.06 2.49 8.14 -2.38 -0.02 2.47 16 26 H 0.34 12.43 7.06 -89.69 -0.63 11.79 16 27 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.07 2.01 7.72 -2.39 -0.02 1.99 16 29 H 0.10 2.06 7.27 -2.39 -0.02 2.04 16 30 H 0.09 2.03 7.91 -2.39 -0.02 2.01 16 31 H 0.07 1.05 8.06 -2.38 -0.02 1.03 16 32 H 0.08 1.03 8.14 -2.39 -0.02 1.02 16 33 H 0.06 1.03 8.05 -2.39 -0.02 1.01 16 34 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.06 1.20 7.12 -2.39 -0.02 1.18 16 37 H 0.06 1.65 7.93 -2.39 -0.02 1.63 16 38 H 0.06 1.43 7.78 -2.38 -0.02 1.41 16 Total: -1.00 -63.90 298.81 2.06 -61.84 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: 0.37 Total: 16.04 kcal Atomic # 6 Polarization: -40.61 SS G_CDS: 2.58 Total: -38.03 kcal Atomic # 7 Polarization: -83.77 SS G_CDS: -2.91 Total: -86.68 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.83 kcal Total: -63.90 2.06 -61.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693592649.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.303 kcal (2) G-P(sol) polarization free energy of solvation -63.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds