Wall clock time and date at job start Mon Mar 30 2020 02:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 N 1.46895 * 109.47182 * 180.02562 * 9 7 2 11 11 C 1.46901 * 110.99820 * 180.02562 * 10 9 7 12 12 H 1.09004 * 112.85982 * 334.66313 * 11 10 9 13 13 C 1.53845 * 113.63212 * 105.91289 * 11 10 9 14 14 C 1.54130 * 87.04785 * 89.41285 * 13 11 10 15 15 C 1.53394 * 113.62954 * 203.42049 * 11 10 9 16 16 C 1.52721 * 113.55023 * 156.10574 * 15 11 10 17 17 C 1.53140 * 109.24205 * 172.55888 * 16 15 11 18 18 C 1.52963 * 109.43451 * 57.82457 * 17 16 15 19 19 C 1.52975 * 109.69746 * 298.30467 * 18 17 16 20 20 C 1.52724 * 113.55548 * 25.28666 * 15 11 10 21 21 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 23 23 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 24 24 H 1.00907 * 111.00089 * 303.95190 * 10 9 7 25 25 H 1.09006 * 113.60507 * 203.93094 * 13 11 10 26 26 H 1.08992 * 113.60660 * 334.79829 * 13 11 10 27 27 H 1.08995 * 113.62886 * 270.63894 * 14 13 11 28 28 H 1.08995 * 113.71955 * 139.68047 * 14 13 11 29 29 H 1.09002 * 109.51352 * 292.49214 * 16 15 11 30 30 H 1.09005 * 109.50662 * 52.62841 * 16 15 11 31 31 H 1.08994 * 109.47716 * 297.83266 * 17 16 15 32 32 H 1.09002 * 109.47637 * 177.81609 * 17 16 15 33 33 H 1.09002 * 109.43338 * 178.23932 * 18 17 16 34 34 H 1.09001 * 109.43477 * 58.38143 * 18 17 16 35 35 H 1.09003 * 109.47660 * 301.71602 * 19 18 17 36 36 H 1.09000 * 109.47827 * 181.68346 * 19 18 17 37 37 H 1.09010 * 109.50624 * 307.37723 * 20 15 11 38 38 H 1.08995 * 109.50991 * 67.51812 * 20 15 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2057 -3.6156 0.0018 11 6 1.5054 -4.9070 0.0012 12 1 0.5051 -4.8464 0.4299 13 6 1.5527 -5.6335 -1.3541 14 6 2.8593 -6.2897 -0.8666 15 6 2.3453 -6.0621 0.5609 16 6 1.5080 -7.2206 1.0988 17 6 2.4326 -8.3874 1.4579 18 6 3.4647 -7.9211 2.4860 19 6 4.3228 -6.8058 1.8859 20 6 3.4318 -5.6108 1.5347 21 1 -0.4850 -0.8401 -0.0004 22 1 0.6241 -2.5566 0.8903 23 1 0.6247 -2.5571 -0.8897 24 1 2.8412 -3.5489 -0.7792 25 1 0.7363 -6.3413 -1.4986 26 1 1.6890 -4.9644 -2.2035 27 1 3.7532 -5.7138 -1.1061 28 1 2.9487 -7.3420 -1.1363 29 1 0.9678 -6.8970 1.9885 30 1 0.7973 -7.5405 0.3368 31 1 2.9446 -8.7348 0.5607 32 1 1.8430 -9.2021 1.8785 33 1 4.1031 -8.7594 2.7650 34 1 2.9511 -7.5469 3.3716 35 1 4.8139 -7.1706 0.9838 36 1 5.0761 -6.4969 2.6106 37 1 4.0354 -4.8307 1.0706 38 1 2.9691 -5.2226 2.4420 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000694467824.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:19 Heat of formation + Delta-G solvation = -12.411810 kcal Electronic energy + Delta-G solvation = -15893.524287 eV Core-core repulsion = 13541.872915 eV Total energy + Delta-G solvation = -2351.651372 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.26167 -36.02543 -33.85377 -31.61549 -30.59631 -28.32459 -26.07061 -23.98254 -22.85511 -22.21170 -21.65223 -19.93262 -17.66656 -16.85478 -15.41180 -15.26129 -14.43042 -13.92515 -13.74721 -13.67978 -13.47374 -13.00308 -12.89835 -12.32430 -12.05434 -11.78944 -11.66884 -11.27839 -10.98966 -10.84746 -10.76972 -10.59915 -10.52259 -10.45756 -10.07339 -9.77120 -9.51318 -9.45947 -8.57811 -8.39963 -7.33578 -6.36617 -4.05412 3.45283 3.47915 3.66385 4.52443 4.66521 4.76499 4.89952 5.09053 5.11468 5.18171 5.37716 5.40417 5.50179 5.56272 5.63222 5.72223 5.76206 5.87191 5.91961 5.96282 6.10003 6.13957 6.18765 6.20297 6.27477 6.35447 6.47560 6.53847 6.65262 6.81458 6.92842 7.00359 7.20153 7.82740 8.18045 8.49233 8.59347 8.88239 9.66485 11.03245 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.044108 B = 0.006137 C = 0.005822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.656695 B = 4561.353605 C = 4808.333392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.014 3.986 3 Si 1.073 2.927 4 H -0.283 1.283 5 H -0.287 1.287 6 H -0.288 1.288 7 C -0.595 4.595 8 H 0.055 0.945 9 C 0.186 3.814 10 N -0.658 5.658 11 C 0.078 3.922 12 H 0.070 0.930 13 C -0.174 4.174 14 C -0.125 4.125 15 C -0.072 4.072 16 C -0.094 4.094 17 C -0.114 4.114 18 C -0.118 4.118 19 C -0.120 4.120 20 C -0.087 4.087 21 H 0.267 0.733 22 H 0.017 0.983 23 H -0.025 1.025 24 H 0.332 0.668 25 H 0.074 0.926 26 H 0.062 0.938 27 H 0.078 0.922 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.055 0.945 33 H 0.053 0.947 34 H 0.059 0.941 35 H 0.056 0.944 36 H 0.055 0.945 37 H 0.075 0.925 38 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.520 -15.463 1.229 16.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.189 4.189 3 Si 0.901 3.099 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.215 1.215 7 C -0.634 4.634 8 H 0.074 0.926 9 C 0.059 3.941 10 N -0.287 5.287 11 C -0.034 4.034 12 H 0.088 0.912 13 C -0.213 4.213 14 C -0.163 4.163 15 C -0.073 4.073 16 C -0.132 4.132 17 C -0.152 4.152 18 C -0.155 4.155 19 C -0.158 4.158 20 C -0.124 4.124 21 H 0.077 0.923 22 H 0.035 0.965 23 H -0.007 1.007 24 H 0.149 0.851 25 H 0.092 0.908 26 H 0.081 0.919 27 H 0.096 0.904 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.094 0.906 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.404 -13.764 1.923 14.911 hybrid contribution -0.224 -1.783 -0.963 2.038 sum 5.180 -15.547 0.960 16.415 Atomic orbital electron populations 1.70793 1.06896 1.30420 1.46919 1.25857 0.96490 1.02747 0.93838 0.83481 0.74776 0.75077 0.76522 1.20837 1.21370 1.21504 1.22002 0.94773 0.91319 1.55267 0.92648 1.19674 0.91235 0.88841 0.94395 1.60390 1.19842 1.00002 1.48437 1.22638 0.96494 0.90248 0.94042 0.91173 1.23682 0.98120 1.00458 0.99062 1.22906 0.97290 0.99722 0.96363 1.21677 0.96367 0.94988 0.94233 1.21269 0.97066 0.94340 1.00486 1.21491 0.97365 0.97349 0.98992 1.21501 0.97551 0.98074 0.98404 1.21589 0.97893 0.96219 1.00057 1.21204 0.96062 0.96303 0.98846 0.92306 0.96452 1.00702 0.85052 0.90760 0.91903 0.90370 0.92340 0.91919 0.92279 0.92230 0.92593 0.92847 0.92234 0.92539 0.92645 0.90637 0.92310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.31 13.65 55.43 0.76 -27.56 16 2 C 0.01 0.42 5.46 -17.82 -0.10 0.32 16 3 Si 1.07 25.61 29.90 -169.99 -5.08 20.53 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 6 H -0.29 -6.55 7.11 56.52 0.40 -6.14 16 7 C -0.60 -17.20 9.32 -34.44 -0.32 -17.53 16 8 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16 9 C 0.19 4.89 4.61 -4.98 -0.02 4.87 16 10 N -0.66 -14.16 5.25 -107.30 -0.56 -14.72 16 11 C 0.08 1.40 3.70 -67.07 -0.25 1.15 16 12 H 0.07 1.35 7.83 -51.93 -0.41 0.94 16 13 C -0.17 -2.68 7.27 -25.70 -0.19 -2.87 16 14 C -0.13 -1.74 6.59 -25.92 -0.17 -1.92 16 15 C -0.07 -1.05 0.74 -154.37 -0.11 -1.17 16 16 C -0.09 -1.20 5.03 -26.80 -0.13 -1.34 16 17 C -0.11 -1.26 5.84 -26.68 -0.16 -1.41 16 18 C -0.12 -1.31 5.86 -26.76 -0.16 -1.47 16 19 C -0.12 -1.48 5.85 -26.67 -0.16 -1.64 16 20 C -0.09 -1.31 4.67 -26.80 -0.13 -1.44 16 21 H 0.27 8.26 7.22 -40.82 -0.29 7.96 16 22 H 0.02 0.49 8.00 -51.93 -0.42 0.08 16 23 H -0.02 -0.68 8.01 -51.93 -0.42 -1.10 16 24 H 0.33 6.97 8.11 -39.29 -0.32 6.65 16 25 H 0.07 1.04 7.61 -51.93 -0.40 0.65 16 26 H 0.06 1.03 8.08 -51.93 -0.42 0.61 16 27 H 0.08 1.12 7.99 -51.93 -0.41 0.70 16 28 H 0.06 0.73 7.36 -51.93 -0.38 0.34 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.06 0.72 7.31 -51.93 -0.38 0.35 16 31 H 0.06 0.64 7.38 -51.93 -0.38 0.26 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.68 7.97 -51.93 -0.41 0.26 16 36 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.08 1.27 7.40 -51.92 -0.38 0.89 16 38 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 LS Contribution 292.01 15.07 4.40 4.40 Total: -1.00 -29.86 292.01 -9.15 -39.00 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -6.77 Total: 2.78 kcal Atomic # 6 Polarization: -22.54 SS G_CDS: -1.89 Total: -24.43 kcal Atomic # 7 Polarization: -42.47 SS G_CDS: 0.19 Total: -42.28 kcal Atomic # 14 Polarization: 25.61 SS G_CDS: -5.08 Total: 20.53 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -29.86 -9.15 -39.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694467824.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.593 kcal (2) G-P(sol) polarization free energy of solvation -29.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds