Wall clock time and date at job start Mon Mar 30 2020 03:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99772 * 2 1 4 4 H 1.48506 * 109.47297 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47261 * 60.00248 * 3 2 1 6 6 H 1.48500 * 109.47454 * 300.00241 * 3 2 1 7 7 C 1.37875 * 120.00380 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00559 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99838 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47207 * 180.02562 * 9 7 2 11 11 N 1.46896 * 109.46899 * 179.97438 * 10 9 7 12 12 C 1.46903 * 110.99991 * 179.97438 * 11 10 9 13 13 C 1.52995 * 109.47626 * 180.02562 * 12 11 10 14 14 H 1.09005 * 109.35283 * 54.71874 * 13 12 11 15 15 C 1.52880 * 109.35726 * 295.00263 * 13 12 11 16 16 C 1.53295 * 108.58141 * 185.26592 * 15 13 12 17 17 C 1.52874 * 108.58910 * 74.44395 * 16 15 13 18 18 C 1.52070 * 110.51466 * 305.10767 * 17 16 15 19 19 H 1.08995 * 114.63970 * 165.62795 * 18 17 16 20 20 C 1.52304 * 119.83859 * 310.45219 * 18 17 16 21 21 C 1.52072 * 120.01891 * 21.70287 * 18 17 16 22 22 H 1.08994 * 117.25371 * 144.43850 * 21 18 17 23 23 H 0.97001 * 119.99667 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.46894 * 300.00433 * 9 7 2 25 25 H 1.08998 * 109.47107 * 60.00164 * 9 7 2 26 26 H 1.08993 * 109.47110 * 300.00135 * 10 9 7 27 27 H 1.09006 * 109.46692 * 60.00091 * 10 9 7 28 28 H 1.00903 * 111.00080 * 56.04955 * 11 10 9 29 29 H 1.09007 * 109.46929 * 300.00583 * 12 11 10 30 30 H 1.09002 * 109.46990 * 60.00201 * 12 11 10 31 31 H 1.08997 * 109.61630 * 304.99743 * 15 13 12 32 32 H 1.09008 * 109.61663 * 65.35635 * 15 13 12 33 33 H 1.08996 * 109.61613 * 194.17336 * 16 15 13 34 34 H 1.09002 * 109.61893 * 314.53124 * 16 15 13 35 35 H 1.08993 * 109.26724 * 65.37788 * 17 16 15 36 36 H 1.09006 * 109.26612 * 184.84288 * 17 16 15 37 37 H 1.09000 * 117.53668 * 217.19317 * 20 18 17 38 38 H 1.08994 * 117.54237 * 2.43916 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 1.2125 6 1 1.8903 2.3965 -1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 7 1.5109 -4.9342 0.0001 12 6 2.4354 -6.0759 -0.0005 13 6 1.6354 -7.3800 -0.0005 14 1 0.9399 -7.3772 -0.8398 15 6 0.8513 -7.4935 1.3070 16 6 0.1627 -8.8625 1.3464 17 6 1.2173 -9.9303 1.6371 18 6 2.3499 -9.8500 0.6255 19 1 3.2472 -10.4031 0.9031 20 6 2.0339 -9.7984 -0.8635 21 6 2.5927 -8.5611 -0.1440 22 1 3.6273 -8.2998 -0.3663 23 1 -0.4850 -0.8401 0.0004 24 1 0.6247 -2.5570 0.8897 25 1 0.6242 -2.5567 -0.8903 26 1 2.8720 -3.6043 -0.8904 27 1 2.8720 -3.6042 0.8895 28 1 0.8742 -4.9845 -0.7811 29 1 3.0628 -6.0348 -0.8910 30 1 3.0640 -6.0348 0.8891 31 1 1.5337 -7.4026 2.1520 32 1 0.1026 -6.7026 1.3545 33 1 -0.5921 -8.8700 2.1327 34 1 -0.3092 -9.0626 0.3843 35 1 1.6181 -9.7766 2.6389 36 1 0.7555 -10.9162 1.5824 37 1 2.7016 -10.3328 -1.5392 38 1 0.9839 -9.7802 -1.1555 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000694677459.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:44 Heat of formation + Delta-G solvation = -12.999421 kcal Electronic energy + Delta-G solvation = -15106.268864 eV Core-core repulsion = 12754.592011 eV Total energy + Delta-G solvation = -2351.676852 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.79379 -36.14375 -33.60093 -32.85828 -31.43055 -28.53556 -25.77540 -23.70000 -22.80073 -21.89619 -21.12086 -20.61159 -18.44808 -16.70797 -16.27736 -15.13530 -14.65670 -14.27671 -14.19686 -13.70959 -13.56908 -13.39068 -12.88167 -12.51532 -12.26587 -11.85638 -11.55525 -11.29516 -11.22011 -10.97434 -10.82652 -10.71571 -10.27735 -10.11745 -10.08644 -9.92300 -9.67357 -9.58669 -8.54543 -8.29052 -7.85108 -6.33346 -4.01913 3.45604 3.50046 3.63232 3.64445 4.38047 4.56455 4.62296 4.69149 4.86766 5.01050 5.11825 5.18570 5.29854 5.38530 5.44771 5.52877 5.59198 5.64659 5.74385 5.84878 5.92786 5.97422 6.05835 6.10356 6.16899 6.26435 6.27697 6.36501 6.47905 6.53144 6.86138 7.29989 7.53554 7.72438 7.90451 8.28388 8.50543 8.92414 9.70687 11.08027 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.065313 B = 0.004274 C = 0.004146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 428.600879 B = 6549.967526 C = 6752.576481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.015 3.985 3 Si 1.075 2.925 4 H -0.290 1.290 5 H -0.287 1.287 6 H -0.287 1.287 7 C -0.603 4.603 8 H 0.048 0.952 9 C 0.012 3.988 10 C 0.073 3.927 11 N -0.691 5.691 12 C 0.065 3.935 13 C -0.052 4.052 14 H 0.068 0.932 15 C -0.104 4.104 16 C -0.124 4.124 17 C -0.087 4.087 18 C -0.139 4.139 19 H 0.094 0.906 20 C -0.186 4.186 21 C -0.140 4.140 22 H 0.100 0.900 23 H 0.270 0.730 24 H 0.016 0.984 25 H 0.004 0.996 26 H 0.015 0.985 27 H 0.059 0.941 28 H 0.333 0.667 29 H 0.022 0.978 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.077 0.923 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.065 0.935 36 H 0.061 0.939 37 H 0.088 0.912 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.332 -19.649 0.597 19.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.189 4.189 3 Si 0.903 3.097 4 H -0.216 1.216 5 H -0.213 1.213 6 H -0.214 1.214 7 C -0.642 4.642 8 H 0.066 0.934 9 C -0.026 4.026 10 C -0.055 4.055 11 N -0.322 5.322 12 C -0.065 4.065 13 C -0.071 4.071 14 H 0.087 0.913 15 C -0.142 4.142 16 C -0.162 4.162 17 C -0.125 4.125 18 C -0.157 4.157 19 H 0.112 0.888 20 C -0.223 4.223 21 C -0.159 4.159 22 H 0.118 0.882 23 H 0.081 0.919 24 H 0.035 0.965 25 H 0.022 0.978 26 H 0.034 0.966 27 H 0.077 0.923 28 H 0.150 0.850 29 H 0.040 0.960 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.095 0.905 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.107 0.893 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 3.075 -18.005 1.282 18.311 hybrid contribution 0.695 -1.716 -1.025 2.116 sum 3.770 -19.721 0.257 20.080 Atomic orbital electron populations 1.70708 1.06880 1.30744 1.46730 1.25839 0.96567 1.02683 0.93803 0.83470 0.74408 0.74837 0.76953 1.21585 1.21298 1.21376 1.22062 0.94297 0.92027 1.55769 0.93360 1.19205 0.94690 0.92294 0.96375 1.21990 0.96624 0.88122 0.98771 1.60595 1.19911 1.02153 1.49493 1.21999 0.94429 0.90080 0.99959 1.20639 0.95776 0.92061 0.98587 0.91328 1.21504 0.99523 0.96322 0.96813 1.21647 0.97534 0.95478 1.01514 1.20839 0.94869 0.98879 0.97885 1.21805 1.00332 1.00464 0.93093 0.88787 1.23115 1.01808 1.02706 0.94638 1.22280 0.99836 0.89316 1.04471 0.88225 0.91946 0.96543 0.97775 0.96627 0.92274 0.84961 0.96010 0.91400 0.92011 0.90481 0.91919 0.92173 0.91589 0.92006 0.89307 0.88817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.62 13.65 55.43 0.76 -27.86 16 2 C 0.01 0.44 5.46 -17.82 -0.10 0.34 16 3 Si 1.07 25.87 29.90 -169.99 -5.08 20.79 16 4 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 6 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.60 -17.67 9.11 -34.44 -0.31 -17.98 16 8 H 0.05 1.40 7.74 -52.49 -0.41 0.99 16 9 C 0.01 0.31 4.54 -27.88 -0.13 0.19 16 10 C 0.07 1.60 5.62 -3.82 -0.02 1.58 16 11 N -0.69 -12.48 6.05 -113.78 -0.69 -13.17 16 12 C 0.07 0.97 4.93 -3.82 -0.02 0.95 16 13 C -0.05 -0.65 2.26 -90.84 -0.21 -0.85 16 14 H 0.07 0.87 8.05 -51.93 -0.42 0.46 16 15 C -0.10 -1.30 5.02 -26.64 -0.13 -1.43 16 16 C -0.12 -1.29 5.70 -26.64 -0.15 -1.44 16 17 C -0.09 -0.82 5.93 -27.27 -0.16 -0.98 16 18 C -0.14 -1.36 6.00 -91.92 -0.55 -1.91 16 19 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 20 C -0.19 -1.81 9.66 -26.75 -0.26 -2.06 16 21 C -0.14 -1.54 5.61 -90.91 -0.51 -2.05 16 22 H 0.10 1.09 7.92 -51.93 -0.41 0.68 16 23 H 0.27 8.44 7.22 -40.82 -0.29 8.15 16 24 H 0.02 0.46 8.01 -51.93 -0.42 0.04 16 25 H 0.00 0.11 8.01 -51.93 -0.42 -0.31 16 26 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 28 H 0.33 5.82 8.73 -39.29 -0.34 5.47 16 29 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 31 H 0.06 0.80 8.04 -51.93 -0.42 0.38 16 32 H 0.08 1.09 7.90 -51.92 -0.41 0.68 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.62 7.12 -51.93 -0.37 0.25 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.09 0.91 7.27 -51.93 -0.38 0.54 16 LS Contribution 300.08 15.07 4.52 4.52 Total: -1.00 -30.48 300.08 -9.93 -40.40 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -6.88 Total: 0.98 kcal Atomic # 6 Polarization: -23.12 SS G_CDS: -2.55 Total: -25.67 kcal Atomic # 7 Polarization: -41.09 SS G_CDS: 0.07 Total: -41.03 kcal Atomic # 14 Polarization: 25.87 SS G_CDS: -5.08 Total: 20.79 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -30.48 -9.93 -40.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694677459.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.403 kcal (2) G-P(sol) polarization free energy of solvation -30.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds