Wall clock time and date at job start Mon Mar 30 2020 03:17:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99772 * 2 1 4 4 H 1.48506 * 109.47297 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47261 * 60.00248 * 3 2 1 6 6 H 1.48500 * 109.47454 * 300.00241 * 3 2 1 7 7 C 1.37875 * 120.00380 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00559 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99838 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47207 * 180.02562 * 9 7 2 11 11 N 1.46896 * 109.46899 * 179.97438 * 10 9 7 12 12 C 1.46903 * 110.99991 * 179.97438 * 11 10 9 13 13 C 1.52995 * 109.47626 * 180.02562 * 12 11 10 14 14 H 1.09005 * 109.35283 * 54.71874 * 13 12 11 15 15 C 1.52880 * 109.35726 * 295.00263 * 13 12 11 16 16 C 1.53295 * 108.58141 * 185.26592 * 15 13 12 17 17 C 1.52874 * 108.58910 * 74.44395 * 16 15 13 18 18 C 1.52070 * 110.51466 * 305.10767 * 17 16 15 19 19 H 1.08995 * 114.63970 * 165.62795 * 18 17 16 20 20 C 1.52304 * 119.83859 * 310.45219 * 18 17 16 21 21 C 1.52072 * 120.01891 * 21.70287 * 18 17 16 22 22 H 1.08994 * 117.25371 * 144.43850 * 21 18 17 23 23 H 0.97001 * 119.99667 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.46894 * 300.00433 * 9 7 2 25 25 H 1.08998 * 109.47107 * 60.00164 * 9 7 2 26 26 H 1.08993 * 109.47110 * 300.00135 * 10 9 7 27 27 H 1.09006 * 109.46692 * 60.00091 * 10 9 7 28 28 H 1.00903 * 111.00080 * 56.04955 * 11 10 9 29 29 H 1.09007 * 109.46929 * 300.00583 * 12 11 10 30 30 H 1.09002 * 109.46990 * 60.00201 * 12 11 10 31 31 H 1.08997 * 109.61630 * 304.99743 * 15 13 12 32 32 H 1.09008 * 109.61663 * 65.35635 * 15 13 12 33 33 H 1.08996 * 109.61613 * 194.17336 * 16 15 13 34 34 H 1.09002 * 109.61893 * 314.53124 * 16 15 13 35 35 H 1.08993 * 109.26724 * 65.37788 * 17 16 15 36 36 H 1.09006 * 109.26612 * 184.84288 * 17 16 15 37 37 H 1.09000 * 117.53668 * 217.19317 * 20 18 17 38 38 H 1.08994 * 117.54237 * 2.43916 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 1.2125 6 1 1.8903 2.3965 -1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 7 1.5109 -4.9342 0.0001 12 6 2.4354 -6.0759 -0.0005 13 6 1.6354 -7.3800 -0.0005 14 1 0.9399 -7.3772 -0.8398 15 6 0.8513 -7.4935 1.3070 16 6 0.1627 -8.8625 1.3464 17 6 1.2173 -9.9303 1.6371 18 6 2.3499 -9.8500 0.6255 19 1 3.2472 -10.4031 0.9031 20 6 2.0339 -9.7984 -0.8635 21 6 2.5927 -8.5611 -0.1440 22 1 3.6273 -8.2998 -0.3663 23 1 -0.4850 -0.8401 0.0004 24 1 0.6247 -2.5570 0.8897 25 1 0.6242 -2.5567 -0.8903 26 1 2.8720 -3.6043 -0.8904 27 1 2.8720 -3.6042 0.8895 28 1 0.8742 -4.9845 -0.7811 29 1 3.0628 -6.0348 -0.8910 30 1 3.0640 -6.0348 0.8891 31 1 1.5337 -7.4026 2.1520 32 1 0.1026 -6.7026 1.3545 33 1 -0.5921 -8.8700 2.1327 34 1 -0.3092 -9.0626 0.3843 35 1 1.6181 -9.7766 2.6389 36 1 0.7555 -10.9162 1.5824 37 1 2.7016 -10.3328 -1.5392 38 1 0.9839 -9.7802 -1.1555 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000694677459.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:43 Heat of formation + Delta-G solvation = -30.533643 kcal Electronic energy + Delta-G solvation = -15107.029205 eV Core-core repulsion = 12754.592011 eV Total energy + Delta-G solvation = -2352.437193 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.68273 -37.69079 -35.53444 -33.89277 -32.81094 -30.23914 -27.03954 -25.54781 -23.75050 -23.15209 -22.75261 -21.71026 -19.31147 -18.91754 -17.32782 -16.50795 -15.96008 -15.72374 -15.48767 -15.11553 -14.90962 -14.71319 -14.15130 -14.00316 -13.63273 -13.32993 -12.97172 -12.71081 -12.51741 -12.21033 -12.04295 -11.94988 -11.86115 -11.83298 -11.56619 -11.16071 -10.79272 -10.59615 -10.56268 -10.47716 -9.36980 -8.71618 -6.41956 1.52016 1.62183 1.78686 2.55233 2.85393 3.14507 3.19835 3.71549 3.78287 3.89262 4.14529 4.18347 4.24501 4.29681 4.39416 4.45101 4.47866 4.58263 4.71079 4.75868 4.82979 4.86799 4.92653 4.97182 5.13827 5.19997 5.25891 5.27943 5.32792 5.39250 5.40930 5.48766 5.54195 5.89268 6.12585 6.17245 6.40831 6.57772 7.40818 8.69818 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.065313 B = 0.004274 C = 0.004146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 428.600879 B = 6549.967526 C = 6752.576481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.038 4.038 3 Si 1.125 2.875 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.622 4.622 8 H 0.050 0.950 9 C 0.016 3.984 10 C 0.091 3.909 11 N -0.693 5.693 12 C 0.068 3.932 13 C -0.043 4.043 14 H 0.066 0.934 15 C -0.103 4.103 16 C -0.120 4.120 17 C -0.087 4.087 18 C -0.134 4.134 19 H 0.106 0.894 20 C -0.178 4.178 21 C -0.156 4.156 22 H 0.101 0.899 23 H 0.256 0.744 24 H -0.008 1.008 25 H -0.011 1.011 26 H 0.016 0.984 27 H 0.055 0.945 28 H 0.337 0.663 29 H 0.026 0.974 30 H 0.064 0.936 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.068 0.932 34 H 0.061 0.939 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.101 0.899 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.444 -20.702 0.479 21.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.236 4.236 3 Si 0.946 3.054 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.202 1.202 7 C -0.660 4.660 8 H 0.068 0.932 9 C -0.022 4.022 10 C -0.038 4.038 11 N -0.324 5.324 12 C -0.061 4.061 13 C -0.062 4.062 14 H 0.084 0.916 15 C -0.141 4.141 16 C -0.158 4.158 17 C -0.124 4.124 18 C -0.153 4.153 19 H 0.124 0.876 20 C -0.215 4.215 21 C -0.175 4.175 22 H 0.119 0.881 23 H 0.065 0.935 24 H 0.010 0.990 25 H 0.007 0.993 26 H 0.035 0.965 27 H 0.074 0.926 28 H 0.155 0.845 29 H 0.045 0.955 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.096 0.904 37 H 0.120 0.880 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 4.186 -19.100 1.162 19.587 hybrid contribution 0.322 -1.446 -0.984 1.779 sum 4.508 -20.546 0.178 21.035 Atomic orbital electron populations 1.70851 1.07953 1.29947 1.48642 1.27501 0.96608 1.06933 0.92531 0.82840 0.74165 0.70726 0.77658 1.19446 1.20267 1.20236 1.22484 0.94692 0.93399 1.55452 0.93151 1.19101 0.94995 0.93721 0.94358 1.21626 0.95304 0.88328 0.98592 1.60504 1.20336 1.01658 1.49864 1.22057 0.94209 0.89897 0.99952 1.20530 0.95758 0.91469 0.98449 0.91568 1.21456 0.98933 0.97126 0.96558 1.21613 0.97885 0.94390 1.01905 1.20859 0.94464 0.99169 0.97927 1.21914 1.00879 0.99209 0.93255 0.87586 1.23170 1.02004 1.01350 0.94926 1.22199 0.99483 0.89247 1.06538 0.88123 0.93473 0.98982 0.99300 0.96543 0.92616 0.84542 0.95532 0.91719 0.92714 0.92714 0.91326 0.91995 0.91315 0.90419 0.88043 0.88837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.51 13.65 21.45 0.29 -59.22 16 2 C -0.04 -2.28 5.46 84.65 0.46 -1.82 16 3 Si 1.13 51.28 29.90 68.60 2.05 53.33 16 4 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 5 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 6 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 7 C -0.62 -36.77 9.11 25.60 0.23 -36.54 16 8 H 0.05 2.90 7.74 -2.91 -0.02 2.87 16 9 C 0.02 0.85 4.54 29.85 0.14 0.99 16 10 C 0.09 3.98 5.62 86.30 0.49 4.47 16 11 N -0.69 -25.17 6.05 -513.88 -3.11 -28.28 16 12 C 0.07 1.99 4.93 86.30 0.43 2.41 16 13 C -0.04 -1.05 2.26 -10.93 -0.02 -1.07 16 14 H 0.07 1.63 8.05 -2.38 -0.02 1.61 16 15 C -0.10 -2.52 5.02 30.65 0.15 -2.37 16 16 C -0.12 -2.32 5.70 30.65 0.17 -2.14 16 17 C -0.09 -1.43 5.93 30.25 0.18 -1.25 16 18 C -0.13 -2.30 6.00 -11.64 -0.07 -2.37 16 19 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 20 C -0.18 -3.02 9.66 30.58 0.30 -2.72 16 21 C -0.16 -3.15 5.61 -10.98 -0.06 -3.22 16 22 H 0.10 2.02 7.92 -2.39 -0.02 2.00 16 23 H 0.26 16.53 7.22 -92.71 -0.67 15.86 16 24 H -0.01 -0.48 8.01 -2.38 -0.02 -0.50 16 25 H -0.01 -0.64 8.01 -2.39 -0.02 -0.66 16 26 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.06 2.47 8.14 -2.38 -0.02 2.45 16 28 H 0.34 11.87 8.73 -89.69 -0.78 11.09 16 29 H 0.03 0.76 8.14 -2.38 -0.02 0.74 16 30 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.05 1.40 8.04 -2.39 -0.02 1.38 16 32 H 0.05 1.56 7.90 -2.38 -0.02 1.55 16 33 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.06 1.17 7.12 -2.39 -0.02 1.16 16 35 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 37 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.09 1.60 7.27 -2.39 -0.02 1.59 16 Total: -1.00 -65.04 300.08 1.95 -63.09 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: 0.32 Total: 16.70 kcal Atomic # 6 Polarization: -48.01 SS G_CDS: 2.39 Total: -45.62 kcal Atomic # 7 Polarization: -84.68 SS G_CDS: -2.82 Total: -87.50 kcal Atomic # 14 Polarization: 51.28 SS G_CDS: 2.05 Total: 53.33 kcal Total: -65.04 1.95 -63.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694677459.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.557 kcal (2) G-P(sol) polarization free energy of solvation -65.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds