Wall clock time and date at job start Mon Mar 30 2020 03:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 119.99949 * 2 1 4 4 H 1.48504 * 109.47388 * 270.00207 * 3 2 1 5 5 H 1.48503 * 109.47058 * 30.00367 * 3 2 1 6 6 H 1.48497 * 109.47348 * 150.00128 * 3 2 1 7 7 C 1.37873 * 119.99997 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00342 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00209 * 359.97438 * 7 2 1 10 10 N 1.46899 * 109.46991 * 179.97438 * 9 7 2 11 11 C 1.46901 * 110.99727 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.47113 * 180.02562 * 11 10 9 13 13 H 1.08993 * 109.47522 * 55.00886 * 12 11 10 14 14 C 1.52952 * 109.47274 * 294.99677 * 12 11 10 15 15 C 1.52938 * 109.82227 * 177.02404 * 14 12 11 16 16 C 1.53178 * 109.45091 * 62.98346 * 15 14 12 17 17 C 1.53152 * 108.88269 * 303.43190 * 16 15 14 18 18 C 1.52842 * 117.68091 * 268.50775 * 17 16 15 19 19 C 1.52803 * 117.74815 * 199.62732 * 17 16 15 20 20 C 1.53144 * 115.00346 * 53.94158 * 17 16 15 21 21 H 0.96996 * 119.99908 * 359.97438 * 1 2 3 22 22 H 1.08997 * 109.47222 * 60.00239 * 9 7 2 23 23 H 1.08995 * 109.46960 * 300.00187 * 9 7 2 24 24 H 1.00898 * 111.00143 * 303.95282 * 10 9 7 25 25 H 1.09000 * 109.47283 * 59.99928 * 11 10 9 26 26 H 1.09007 * 109.47373 * 299.99941 * 11 10 9 27 27 H 1.09006 * 109.41303 * 297.13669 * 14 12 11 28 28 H 1.09007 * 109.40884 * 56.91509 * 14 12 11 29 29 H 1.08999 * 109.47412 * 182.98052 * 15 14 12 30 30 H 1.09001 * 109.47092 * 302.98673 * 15 14 12 31 31 H 1.08994 * 109.57070 * 63.25804 * 16 15 14 32 32 H 1.09003 * 109.56596 * 183.49358 * 16 15 14 33 33 H 1.09003 * 117.50835 * 359.72784 * 18 17 16 34 34 H 1.08997 * 117.50536 * 144.78037 * 18 17 16 35 35 H 1.09002 * 117.50369 * 215.11823 * 19 17 16 36 36 H 1.09003 * 117.50542 * 0.15516 * 19 17 16 37 37 H 1.09005 * 109.56595 * 186.23082 * 20 17 16 38 38 H 1.08998 * 109.57473 * 65.88135 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2057 -3.6156 -0.0018 11 6 1.5055 -4.9070 -0.0012 12 6 2.5304 -6.0430 -0.0019 13 1 3.2120 -5.9180 0.8395 14 6 3.3235 -6.0134 -1.3094 15 6 4.4001 -7.0994 -1.2876 16 6 3.7343 -8.4763 -1.2029 17 6 2.8340 -8.5162 0.0355 18 6 3.4449 -9.0240 1.3412 19 6 2.4350 -9.8866 0.5811 20 6 1.8045 -7.3859 0.1240 21 1 -0.4850 0.8400 0.0004 22 1 0.6241 -2.5567 -0.8903 23 1 0.6248 -2.5571 0.8896 24 1 2.8400 -3.5482 -0.7836 25 1 0.8796 -4.9813 -0.8905 26 1 0.8815 -4.9816 0.8895 27 1 2.6482 -6.1895 -2.1468 28 1 3.7953 -5.0376 -1.4249 29 1 4.9956 -7.0391 -2.1986 30 1 5.0455 -6.9539 -0.4213 31 1 3.1339 -8.6470 -2.0964 32 1 4.5001 -9.2480 -1.1248 33 1 4.4892 -9.3357 1.3208 34 1 3.1114 -8.5572 2.2680 35 1 1.4370 -9.9873 1.0078 36 1 2.8149 -10.7657 0.0606 37 1 1.2906 -7.4346 1.0841 38 1 1.0808 -7.4870 -0.6848 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695772103.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:06 Heat of formation + Delta-G solvation = -7.893459 kcal Electronic energy + Delta-G solvation = -15304.680398 eV Core-core repulsion = 12953.224956 eV Total energy + Delta-G solvation = -2351.455441 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.48887 -36.16445 -34.04022 -32.45087 -30.90240 -27.57143 -26.70793 -24.12541 -22.57413 -21.95217 -21.38470 -19.85583 -18.57975 -16.40133 -15.46619 -15.23821 -14.80949 -14.53279 -14.16211 -13.55839 -13.36614 -12.87397 -12.77756 -12.55021 -11.93168 -11.66067 -11.57498 -11.30657 -11.23728 -10.90238 -10.86413 -10.72711 -10.67567 -10.31517 -10.07887 -9.85980 -9.71263 -9.47583 -9.08144 -8.45438 -7.22001 -6.00464 -4.02317 3.33487 3.39337 3.44287 3.72650 4.45044 4.56670 4.71212 4.81977 4.92883 5.19269 5.21998 5.27175 5.35409 5.44666 5.56736 5.57561 5.66189 5.73826 5.83661 5.88266 5.89841 6.06064 6.07606 6.08404 6.14730 6.24356 6.36518 6.42134 6.46582 6.63066 6.76902 7.31256 7.47013 7.82296 8.17215 8.45821 8.67516 9.07376 9.62576 11.10770 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.056005 B = 0.004800 C = 0.004622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.838442 B = 5831.911614 C = 6056.505828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.899 3.101 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.513 4.513 8 H 0.062 0.938 9 C 0.193 3.807 10 N -0.690 5.690 11 C 0.063 3.937 12 C -0.080 4.080 13 H 0.077 0.923 14 C -0.115 4.115 15 C -0.114 4.114 16 C -0.080 4.080 17 C -0.115 4.115 18 C -0.175 4.175 19 C -0.181 4.181 20 C -0.075 4.075 21 H 0.261 0.739 22 H -0.015 1.015 23 H 0.027 0.973 24 H 0.327 0.673 25 H 0.016 0.984 26 H 0.061 0.939 27 H 0.056 0.944 28 H 0.068 0.932 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.062 0.938 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.920 -17.709 -1.440 18.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.146 4.146 3 Si 0.727 3.273 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.552 4.552 8 H 0.080 0.920 9 C 0.066 3.934 10 N -0.322 5.322 11 C -0.067 4.067 12 C -0.099 4.099 13 H 0.095 0.905 14 C -0.153 4.153 15 C -0.152 4.152 16 C -0.117 4.117 17 C -0.116 4.116 18 C -0.211 4.211 19 C -0.218 4.218 20 C -0.113 4.113 21 H 0.070 0.930 22 H 0.003 0.997 23 H 0.045 0.955 24 H 0.145 0.855 25 H 0.034 0.966 26 H 0.080 0.920 27 H 0.075 0.925 28 H 0.086 0.914 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.108 0.892 34 H 0.111 0.889 35 H 0.110 0.890 36 H 0.108 0.892 37 H 0.081 0.919 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.839 -17.559 -0.747 18.520 hybrid contribution -0.044 0.871 -0.857 1.222 sum 5.795 -16.689 -1.604 17.739 Atomic orbital electron populations 1.69968 1.06098 1.26733 1.51051 1.24995 0.94871 0.99362 0.95389 0.86487 0.79813 0.83034 0.78008 1.20740 1.21246 1.19757 1.21206 0.93506 0.90309 1.50160 0.91997 1.19546 0.90664 0.87504 0.95673 1.60686 1.21248 1.01343 1.48881 1.21912 0.95022 0.90260 0.99489 1.21145 0.97338 0.93143 0.98240 0.90483 1.21558 0.97395 0.98797 0.97555 1.21492 0.97894 0.94292 1.01492 1.21137 0.97261 0.97385 0.95960 1.21485 1.00285 0.94828 0.94957 1.22997 0.98242 1.03989 0.95922 1.22979 0.99959 0.94299 1.04586 1.21168 0.95924 0.92602 1.01608 0.92950 0.99740 0.95515 0.85531 0.96596 0.92021 0.92535 0.91356 0.92315 0.91904 0.91790 0.92361 0.89183 0.88859 0.89035 0.89233 0.91944 0.91775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.34 13.29 55.43 0.74 -26.60 16 2 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 21.97 29.54 -169.99 -5.02 16.95 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 7 C -0.51 -14.88 9.32 -34.44 -0.32 -15.20 16 8 H 0.06 1.76 7.81 -52.48 -0.41 1.35 16 9 C 0.19 5.22 5.44 -4.98 -0.03 5.19 16 10 N -0.69 -15.25 6.49 -115.05 -0.75 -16.00 16 11 C 0.06 1.16 5.15 -3.82 -0.02 1.14 16 12 C -0.08 -1.17 2.40 -90.55 -0.22 -1.38 16 13 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 14 C -0.12 -1.55 4.94 -26.79 -0.13 -1.68 16 15 C -0.11 -1.29 5.93 -26.67 -0.16 -1.45 16 16 C -0.08 -0.83 5.67 -26.56 -0.15 -0.98 16 17 C -0.12 -1.27 1.97 -154.54 -0.31 -1.57 16 18 C -0.17 -1.79 9.93 -26.80 -0.27 -2.06 16 19 C -0.18 -1.76 9.99 -26.82 -0.27 -2.02 16 20 C -0.08 -0.94 4.95 -26.57 -0.13 -1.07 16 21 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 22 H -0.02 -0.43 8.14 -51.93 -0.42 -0.86 16 23 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 24 H 0.33 6.88 6.91 -39.29 -0.27 6.61 16 25 H 0.02 0.30 8.14 -51.93 -0.42 -0.13 16 26 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.07 0.99 6.54 -51.93 -0.34 0.65 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.54 8.10 -51.93 -0.42 0.12 16 33 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.06 0.78 8.09 -51.93 -0.42 0.36 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 301.55 15.07 4.54 4.54 Total: -1.00 -29.92 301.55 -9.50 -39.41 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -6.92 Total: 1.29 kcal Atomic # 6 Polarization: -17.51 SS G_CDS: -2.09 Total: -19.60 kcal Atomic # 7 Polarization: -42.59 SS G_CDS: -0.01 Total: -42.60 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -29.92 -9.50 -39.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695772103.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.521 kcal (2) G-P(sol) polarization free energy of solvation -29.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds