Wall clock time and date at job start Mon Mar 30 2020 03:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 119.99949 * 2 1 4 4 H 1.48504 * 109.47388 * 270.00207 * 3 2 1 5 5 H 1.48503 * 109.47058 * 30.00367 * 3 2 1 6 6 H 1.48497 * 109.47348 * 150.00128 * 3 2 1 7 7 C 1.37873 * 119.99997 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00342 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00209 * 359.97438 * 7 2 1 10 10 N 1.46899 * 109.46991 * 179.97438 * 9 7 2 11 11 C 1.46901 * 110.99727 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.47113 * 180.02562 * 11 10 9 13 13 H 1.08993 * 109.47522 * 55.00886 * 12 11 10 14 14 C 1.52952 * 109.47274 * 294.99677 * 12 11 10 15 15 C 1.52938 * 109.82227 * 177.02404 * 14 12 11 16 16 C 1.53178 * 109.45091 * 62.98346 * 15 14 12 17 17 C 1.53152 * 108.88269 * 303.43190 * 16 15 14 18 18 C 1.52842 * 117.68091 * 268.50775 * 17 16 15 19 19 C 1.52803 * 117.74815 * 199.62732 * 17 16 15 20 20 C 1.53144 * 115.00346 * 53.94158 * 17 16 15 21 21 H 0.96996 * 119.99908 * 359.97438 * 1 2 3 22 22 H 1.08997 * 109.47222 * 60.00239 * 9 7 2 23 23 H 1.08995 * 109.46960 * 300.00187 * 9 7 2 24 24 H 1.00898 * 111.00143 * 303.95282 * 10 9 7 25 25 H 1.09000 * 109.47283 * 59.99928 * 11 10 9 26 26 H 1.09007 * 109.47373 * 299.99941 * 11 10 9 27 27 H 1.09006 * 109.41303 * 297.13669 * 14 12 11 28 28 H 1.09007 * 109.40884 * 56.91509 * 14 12 11 29 29 H 1.08999 * 109.47412 * 182.98052 * 15 14 12 30 30 H 1.09001 * 109.47092 * 302.98673 * 15 14 12 31 31 H 1.08994 * 109.57070 * 63.25804 * 16 15 14 32 32 H 1.09003 * 109.56596 * 183.49358 * 16 15 14 33 33 H 1.09003 * 117.50835 * 359.72784 * 18 17 16 34 34 H 1.08997 * 117.50536 * 144.78037 * 18 17 16 35 35 H 1.09002 * 117.50369 * 215.11823 * 19 17 16 36 36 H 1.09003 * 117.50542 * 0.15516 * 19 17 16 37 37 H 1.09005 * 109.56595 * 186.23082 * 20 17 16 38 38 H 1.08998 * 109.57473 * 65.88135 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2057 -3.6156 -0.0018 11 6 1.5055 -4.9070 -0.0012 12 6 2.5304 -6.0430 -0.0019 13 1 3.2120 -5.9180 0.8395 14 6 3.3235 -6.0134 -1.3094 15 6 4.4001 -7.0994 -1.2876 16 6 3.7343 -8.4763 -1.2029 17 6 2.8340 -8.5162 0.0355 18 6 3.4449 -9.0240 1.3412 19 6 2.4350 -9.8866 0.5811 20 6 1.8045 -7.3859 0.1240 21 1 -0.4850 0.8400 0.0004 22 1 0.6241 -2.5567 -0.8903 23 1 0.6248 -2.5571 0.8896 24 1 2.8400 -3.5482 -0.7836 25 1 0.8796 -4.9813 -0.8905 26 1 0.8815 -4.9816 0.8895 27 1 2.6482 -6.1895 -2.1468 28 1 3.7953 -5.0376 -1.4249 29 1 4.9956 -7.0391 -2.1986 30 1 5.0455 -6.9539 -0.4213 31 1 3.1339 -8.6470 -2.0964 32 1 4.5001 -9.2480 -1.1248 33 1 4.4892 -9.3357 1.3208 34 1 3.1114 -8.5572 2.2680 35 1 1.4370 -9.9873 1.0078 36 1 2.8149 -10.7657 0.0606 37 1 1.2906 -7.4346 1.0841 38 1 1.0808 -7.4870 -0.6848 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695772103.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:06 Heat of formation + Delta-G solvation = -25.215851 kcal Electronic energy + Delta-G solvation = -15305.431553 eV Core-core repulsion = 12953.224956 eV Total energy + Delta-G solvation = -2352.206596 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.46390 -37.60743 -35.57725 -34.27255 -32.26214 -29.04992 -28.12163 -25.77988 -23.53157 -23.28623 -22.91631 -21.09491 -19.51568 -18.56196 -16.86327 -16.54368 -16.20735 -15.99747 -15.38836 -14.79831 -14.77004 -14.50202 -14.10544 -13.72993 -13.45101 -13.23524 -12.97119 -12.65071 -12.47228 -12.45831 -12.26595 -12.03259 -11.90677 -11.81913 -11.56967 -11.35252 -10.88935 -10.73893 -10.67457 -10.33685 -9.12409 -8.23731 -6.35641 1.40713 1.42924 1.54895 2.39632 2.90722 3.09389 3.52779 3.75093 3.79511 3.99418 4.05034 4.15567 4.26883 4.41760 4.45434 4.57090 4.63093 4.72658 4.84010 4.85917 4.89444 5.02226 5.05503 5.08834 5.10262 5.13889 5.25354 5.31767 5.35290 5.36508 5.42843 5.50988 5.58030 5.63793 6.00979 6.44284 6.72105 6.88309 7.35702 8.88190 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.056005 B = 0.004800 C = 0.004622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.838442 B = 5831.911614 C = 6056.505828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.000 4.000 3 Si 0.976 3.024 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.264 1.264 7 C -0.537 4.537 8 H 0.065 0.935 9 C 0.207 3.793 10 N -0.688 5.688 11 C 0.063 3.937 12 C -0.068 4.068 13 H 0.067 0.933 14 C -0.115 4.115 15 C -0.109 4.109 16 C -0.076 4.076 17 C -0.128 4.128 18 C -0.177 4.177 19 C -0.169 4.169 20 C -0.071 4.071 21 H 0.266 0.734 22 H -0.041 1.041 23 H -0.003 1.003 24 H 0.335 0.665 25 H 0.013 0.987 26 H 0.052 0.948 27 H 0.057 0.943 28 H 0.053 0.947 29 H 0.072 0.928 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.100 0.900 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.105 0.895 37 H 0.060 0.940 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.420 -18.510 -1.791 20.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.198 4.198 3 Si 0.800 3.200 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.188 1.188 7 C -0.575 4.575 8 H 0.083 0.917 9 C 0.079 3.921 10 N -0.320 5.320 11 C -0.066 4.066 12 C -0.087 4.087 13 H 0.085 0.915 14 C -0.152 4.152 15 C -0.147 4.147 16 C -0.114 4.114 17 C -0.128 4.128 18 C -0.214 4.214 19 C -0.206 4.206 20 C -0.109 4.109 21 H 0.074 0.926 22 H -0.024 1.024 23 H 0.016 0.984 24 H 0.153 0.847 25 H 0.031 0.969 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.090 0.910 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.119 0.881 34 H 0.105 0.895 35 H 0.111 0.889 36 H 0.123 0.877 37 H 0.078 0.922 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 7.350 -18.388 -1.103 19.833 hybrid contribution -0.562 1.079 -0.731 1.419 sum 6.788 -17.309 -1.834 18.683 Atomic orbital electron populations 1.70100 1.07906 1.28077 1.51476 1.25995 0.95810 1.03524 0.94439 0.85286 0.78464 0.77695 0.78567 1.19524 1.20616 1.18817 1.21551 0.93821 0.91408 1.50766 0.91706 1.19212 0.90726 0.89189 0.93000 1.60574 1.20504 1.01603 1.49303 1.22006 0.95951 0.89808 0.98845 1.21012 0.96264 0.92733 0.98681 0.91470 1.21540 0.97929 0.99108 0.96660 1.21453 0.97130 0.94022 1.02075 1.21131 0.97504 0.97046 0.95694 1.21449 1.00459 0.95076 0.95843 1.23053 0.99051 1.04039 0.95248 1.23045 0.99978 0.93908 1.03671 1.21091 0.96293 0.92000 1.01517 0.92560 1.02368 0.98447 0.84683 0.96852 0.92978 0.92453 0.92813 0.90951 0.92187 0.91462 0.90658 0.88136 0.89506 0.88867 0.87694 0.92163 0.91778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.75 13.29 21.45 0.28 -57.46 16 2 C 0.00 0.02 5.46 84.65 0.46 0.49 16 3 Si 0.98 44.93 29.54 68.60 2.03 46.96 16 4 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 5 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 6 H -0.26 -11.69 7.11 99.48 0.71 -10.99 16 7 C -0.54 -31.61 9.32 25.60 0.24 -31.37 16 8 H 0.06 3.69 7.81 -2.91 -0.02 3.67 16 9 C 0.21 11.60 5.44 85.56 0.47 12.07 16 10 N -0.69 -31.19 6.49 -517.92 -3.36 -34.55 16 11 C 0.06 2.38 5.15 86.31 0.44 2.83 16 12 C -0.07 -1.97 2.40 -10.75 -0.03 -2.00 16 13 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 14 C -0.11 -3.00 4.94 30.56 0.15 -2.85 16 15 C -0.11 -2.26 5.93 30.63 0.18 -2.08 16 16 C -0.08 -1.39 5.67 30.70 0.17 -1.22 16 17 C -0.13 -2.56 1.97 -52.20 -0.10 -2.66 16 18 C -0.18 -3.26 9.93 30.55 0.30 -2.96 16 19 C -0.17 -2.84 9.99 30.54 0.31 -2.54 16 20 C -0.07 -1.72 4.95 30.70 0.15 -1.57 16 21 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 22 H -0.04 -2.48 8.14 -2.39 -0.02 -2.50 16 23 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 24 H 0.33 14.32 6.91 -89.70 -0.62 13.70 16 25 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 26 H 0.05 2.03 8.14 -2.38 -0.02 2.01 16 27 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 28 H 0.05 1.55 6.54 -2.38 -0.02 1.53 16 29 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.07 1.14 8.10 -2.39 -0.02 1.13 16 33 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.06 1.47 8.09 -2.38 -0.02 1.45 16 38 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -64.16 301.55 2.08 -62.08 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: 0.38 Total: 16.85 kcal Atomic # 6 Polarization: -36.62 SS G_CDS: 2.75 Total: -33.87 kcal Atomic # 7 Polarization: -88.94 SS G_CDS: -3.08 Total: -92.02 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -64.16 2.08 -62.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695772103.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.861 kcal (2) G-P(sol) polarization free energy of solvation -64.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds