Wall clock time and date at job start Mon Mar 30 2020 02:40:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46502 * 109.46957 * 2 1 4 4 C 1.34962 * 125.97544 * 124.99661 * 3 2 1 5 5 C 1.35251 * 107.85970 * 180.02562 * 4 3 2 6 6 C 1.40418 * 107.86571 * 0.02562 * 5 4 3 7 7 N 1.39995 * 125.97540 * 179.97438 * 6 5 4 8 8 C 1.46499 * 120.00001 * 0.02562 * 7 6 5 9 9 H 1.09005 * 109.46777 * 324.99749 * 8 7 6 10 10 C 1.53000 * 109.47088 * 84.99568 * 8 7 6 11 11 C 1.52996 * 109.46916 * 205.00354 * 8 7 6 12 12 C 1.50698 * 109.47677 * 65.00012 * 11 8 7 13 13 H 1.08001 * 119.99468 * 0.02562 * 12 11 8 14 14 C 1.37876 * 120.00187 * 179.97438 * 12 11 8 15 15 N 1.31517 * 120.00022 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00062 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47101 * 90.00143 * 16 14 12 18 18 H 1.48496 * 109.47088 * 210.00224 * 16 14 12 19 19 H 1.48501 * 109.46963 * 329.99796 * 16 14 12 20 20 N 1.31221 * 108.05186 * 0.24376 * 6 5 4 21 21 H 1.09000 * 109.47333 * 300.00052 * 1 2 3 22 22 H 1.08998 * 109.46977 * 60.00875 * 1 2 3 23 23 H 1.09008 * 109.46577 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47333 * 239.99948 * 2 1 3 25 25 H 1.09006 * 109.46847 * 119.99416 * 2 1 3 26 26 H 1.07994 * 126.06812 * 0.02562 * 4 3 2 27 27 H 1.08002 * 126.05905 * 179.97438 * 5 4 3 28 28 H 0.96995 * 119.99985 * 179.72555 * 7 6 5 29 29 H 1.08996 * 109.46807 * 179.97438 * 10 8 7 30 30 H 1.08991 * 109.47305 * 300.00509 * 10 8 7 31 31 H 1.09000 * 109.46737 * 60.00555 * 10 8 7 32 32 H 1.09007 * 109.46742 * 185.00002 * 11 8 7 33 33 H 1.09007 * 109.47046 * 304.99153 * 11 8 7 34 34 H 0.96991 * 120.00183 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8732 1.9199 0.8947 5 6 3.0738 3.2125 0.5505 6 6 2.3117 3.4754 -0.5992 7 7 2.2398 4.6986 -1.2761 8 6 3.0060 5.8497 -0.7924 9 1 3.0452 5.8283 0.2968 10 6 4.4275 5.7890 -1.3551 11 6 2.3297 7.1425 -1.2530 12 6 0.9766 7.2617 -0.6005 13 1 0.6335 6.4925 0.0755 14 6 0.1771 8.3533 -0.8657 15 7 0.5956 9.2907 -1.6877 16 14 -1.5005 8.5007 -0.0575 17 1 -1.3667 9.2247 1.2322 18 1 -2.4173 9.2504 -0.9533 19 1 -2.0511 7.1441 0.1911 20 7 1.6743 2.3756 -0.9248 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5137 -0.8901 23 1 -0.3633 -1.0278 0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8901 26 1 3.3180 1.4095 1.7361 27 1 3.7071 3.9174 1.0687 28 1 1.6860 4.7829 -2.0680 29 1 4.9974 6.6457 -0.9955 30 1 4.9092 4.8680 -1.0270 31 1 4.3883 5.8105 -2.4442 32 1 2.9461 7.9958 -0.9698 33 1 2.2105 7.1241 -2.3364 34 1 0.0334 10.0587 -1.8740 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695857364.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:59 Heat of formation + Delta-G solvation = 68.396994 kcal Electronic energy + Delta-G solvation = -15047.060518 eV Core-core repulsion = 12595.372936 eV Total energy + Delta-G solvation = -2451.687582 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.55931 -36.43305 -34.02519 -32.52856 -30.74408 -29.09996 -27.89351 -27.31188 -23.41139 -22.85485 -21.15157 -19.86069 -19.14447 -16.96994 -16.26310 -15.48293 -14.86958 -14.62089 -14.27579 -14.09084 -13.26963 -12.83665 -12.69277 -12.40303 -12.03844 -11.99209 -11.75065 -11.42876 -11.34737 -11.19744 -10.70787 -10.59199 -10.29930 -9.88438 -9.68798 -9.29195 -9.03377 -8.35626 -8.22678 -6.89852 -5.98099 -3.99112 2.39778 2.84769 3.34620 3.40918 3.46426 3.65423 4.27306 4.49571 4.72903 5.00711 5.08208 5.19474 5.38835 5.55121 5.67748 5.86627 5.97702 6.08151 6.13567 6.17163 6.21228 6.30840 6.54037 6.73964 6.88508 6.97222 7.49822 7.55748 7.65482 7.94849 8.01182 8.40116 8.47627 8.84751 9.07311 9.65012 11.13062 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.027085 B = 0.007089 C = 0.005951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.548285 B = 3948.997516 C = 4703.849189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.142 3.858 3 N -0.386 5.386 4 C 0.065 3.935 5 C -0.304 4.304 6 C 0.352 3.648 7 N -0.694 5.694 8 C 0.164 3.836 9 H 0.064 0.936 10 C -0.164 4.164 11 C 0.015 3.985 12 C -0.511 4.511 13 H 0.057 0.943 14 C 0.057 3.943 15 N -0.897 5.897 16 Si 0.890 3.110 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.275 1.275 20 N -0.368 5.368 21 H 0.058 0.942 22 H 0.071 0.929 23 H 0.067 0.933 24 H 0.075 0.925 25 H 0.087 0.913 26 H 0.164 0.836 27 H 0.140 0.860 28 H 0.402 0.598 29 H 0.057 0.943 30 H 0.043 0.957 31 H 0.050 0.950 32 H 0.031 0.969 33 H 0.022 0.978 34 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.595 -15.591 4.352 16.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.020 3.980 3 N -0.169 5.169 4 C -0.081 4.081 5 C -0.337 4.337 6 C 0.093 3.907 7 N -0.333 5.333 8 C 0.059 3.941 9 H 0.082 0.918 10 C -0.223 4.223 11 C -0.022 4.022 12 C -0.550 4.550 13 H 0.075 0.925 14 C -0.144 4.144 15 N -0.537 5.537 16 Si 0.718 3.282 17 H -0.208 1.208 18 H -0.213 1.213 19 H -0.200 1.200 20 N -0.202 5.202 21 H 0.077 0.923 22 H 0.090 0.910 23 H 0.086 0.914 24 H 0.093 0.907 25 H 0.105 0.895 26 H 0.181 0.819 27 H 0.158 0.842 28 H 0.237 0.763 29 H 0.076 0.924 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.050 0.950 33 H 0.040 0.960 34 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.821 -16.000 3.599 16.839 hybrid contribution -0.598 0.591 0.791 1.154 sum 3.224 -15.409 4.390 16.343 Atomic orbital electron populations 1.22041 0.94392 1.02006 1.03785 1.21429 0.95695 0.78248 1.02633 1.48086 1.37166 1.09407 1.22248 1.22255 0.95482 0.94541 0.95865 1.21074 1.12879 0.96846 1.02943 1.19458 0.92375 0.87485 0.91378 1.44024 1.52499 1.05176 1.31614 1.21084 0.88818 0.86410 0.97799 0.91751 1.22316 0.98164 1.00520 1.01300 1.19401 0.95555 0.90141 0.97122 1.21197 1.01230 1.05823 1.26726 0.92461 1.24994 0.98207 0.95913 0.95301 1.69955 1.37456 1.10461 1.35795 0.86618 0.84279 0.78073 0.79203 1.20752 1.21330 1.19958 1.77419 1.29333 0.96590 1.16893 0.92260 0.91012 0.91445 0.90695 0.89476 0.81878 0.84199 0.76302 0.92408 0.93755 0.93069 0.95042 0.96019 0.93063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.73 10.09 37.16 0.37 -1.36 16 2 C 0.14 1.49 7.23 -4.04 -0.03 1.46 16 3 N -0.39 -5.87 3.68 -61.37 -0.23 -6.10 16 4 C 0.06 0.92 11.44 -17.24 -0.20 0.72 16 5 C -0.30 -5.18 9.92 -39.83 -0.40 -5.58 16 6 C 0.35 6.94 8.14 -154.55 -1.26 5.69 16 7 N -0.69 -14.32 5.00 -53.58 -0.27 -14.58 16 8 C 0.16 3.38 2.52 -67.93 -0.17 3.21 16 9 H 0.06 1.35 7.14 -51.93 -0.37 0.98 16 10 C -0.16 -2.86 9.50 37.16 0.35 -2.51 16 11 C 0.02 0.38 4.52 -27.89 -0.13 0.25 16 12 C -0.51 -14.29 8.84 -34.44 -0.30 -14.60 16 13 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 15 N -0.90 -26.75 13.29 55.43 0.74 -26.01 16 16 Si 0.89 22.11 29.54 -169.99 -5.02 17.09 16 17 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 18 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 19 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 20 N -0.37 -7.10 12.43 31.41 0.39 -6.71 16 21 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 22 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 23 H 0.07 0.51 8.14 -51.92 -0.42 0.09 16 24 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 25 H 0.09 0.63 8.07 -51.93 -0.42 0.21 16 26 H 0.16 1.56 8.06 -52.49 -0.42 1.14 16 27 H 0.14 2.23 7.45 -52.49 -0.39 1.84 16 28 H 0.40 8.56 8.73 -40.82 -0.36 8.20 16 29 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.02 0.57 8.14 -51.92 -0.42 0.15 16 34 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 291.67 15.07 4.40 4.40 Total: -1.00 -31.95 291.67 -7.15 -39.10 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -5.31 Total: 4.02 kcal Atomic # 6 Polarization: -9.34 SS G_CDS: -1.85 Total: -11.19 kcal Atomic # 7 Polarization: -54.04 SS G_CDS: 0.63 Total: -53.40 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -31.95 -7.15 -39.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695857364.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.493 kcal (2) G-P(sol) polarization free energy of solvation -31.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds