Wall clock time and date at job start Mon Mar 30 2020 02:40:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46502 * 109.46957 * 2 1 4 4 C 1.34962 * 125.97544 * 124.99661 * 3 2 1 5 5 C 1.35251 * 107.85970 * 180.02562 * 4 3 2 6 6 C 1.40418 * 107.86571 * 0.02562 * 5 4 3 7 7 N 1.39995 * 125.97540 * 179.97438 * 6 5 4 8 8 C 1.46499 * 120.00001 * 0.02562 * 7 6 5 9 9 H 1.09005 * 109.46777 * 324.99749 * 8 7 6 10 10 C 1.53000 * 109.47088 * 84.99568 * 8 7 6 11 11 C 1.52996 * 109.46916 * 205.00354 * 8 7 6 12 12 C 1.50698 * 109.47677 * 65.00012 * 11 8 7 13 13 H 1.08001 * 119.99468 * 0.02562 * 12 11 8 14 14 C 1.37876 * 120.00187 * 179.97438 * 12 11 8 15 15 N 1.31517 * 120.00022 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00062 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47101 * 90.00143 * 16 14 12 18 18 H 1.48496 * 109.47088 * 210.00224 * 16 14 12 19 19 H 1.48501 * 109.46963 * 329.99796 * 16 14 12 20 20 N 1.31221 * 108.05186 * 0.24376 * 6 5 4 21 21 H 1.09000 * 109.47333 * 300.00052 * 1 2 3 22 22 H 1.08998 * 109.46977 * 60.00875 * 1 2 3 23 23 H 1.09008 * 109.46577 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47333 * 239.99948 * 2 1 3 25 25 H 1.09006 * 109.46847 * 119.99416 * 2 1 3 26 26 H 1.07994 * 126.06812 * 0.02562 * 4 3 2 27 27 H 1.08002 * 126.05905 * 179.97438 * 5 4 3 28 28 H 0.96995 * 119.99985 * 179.72555 * 7 6 5 29 29 H 1.08996 * 109.46807 * 179.97438 * 10 8 7 30 30 H 1.08991 * 109.47305 * 300.00509 * 10 8 7 31 31 H 1.09000 * 109.46737 * 60.00555 * 10 8 7 32 32 H 1.09007 * 109.46742 * 185.00002 * 11 8 7 33 33 H 1.09007 * 109.47046 * 304.99153 * 11 8 7 34 34 H 0.96991 * 120.00183 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8732 1.9199 0.8947 5 6 3.0738 3.2125 0.5505 6 6 2.3117 3.4754 -0.5992 7 7 2.2398 4.6986 -1.2761 8 6 3.0060 5.8497 -0.7924 9 1 3.0452 5.8283 0.2968 10 6 4.4275 5.7890 -1.3551 11 6 2.3297 7.1425 -1.2530 12 6 0.9766 7.2617 -0.6005 13 1 0.6335 6.4925 0.0755 14 6 0.1771 8.3533 -0.8657 15 7 0.5956 9.2907 -1.6877 16 14 -1.5005 8.5007 -0.0575 17 1 -1.3667 9.2247 1.2322 18 1 -2.4173 9.2504 -0.9533 19 1 -2.0511 7.1441 0.1911 20 7 1.6743 2.3756 -0.9248 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5137 -0.8901 23 1 -0.3633 -1.0278 0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8901 26 1 3.3180 1.4095 1.7361 27 1 3.7071 3.9174 1.0687 28 1 1.6860 4.7829 -2.0680 29 1 4.9974 6.6457 -0.9955 30 1 4.9092 4.8680 -1.0270 31 1 4.3883 5.8105 -2.4442 32 1 2.9461 7.9958 -0.9698 33 1 2.2105 7.1241 -2.3364 34 1 0.0334 10.0587 -1.8740 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695857364.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:59 Heat of formation + Delta-G solvation = 48.408886 kcal Electronic energy + Delta-G solvation = -15047.927268 eV Core-core repulsion = 12595.372936 eV Total energy + Delta-G solvation = -2452.554332 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.80774 -38.02749 -35.32583 -34.41305 -32.17037 -30.45774 -29.20616 -29.11209 -25.19815 -24.06232 -22.56127 -21.19179 -20.61431 -18.48246 -18.12506 -16.86715 -16.43920 -16.01125 -15.96485 -15.13137 -14.77796 -14.30301 -14.09067 -13.62805 -13.60133 -13.30040 -13.26368 -12.94462 -12.80551 -12.60713 -12.49384 -12.30088 -12.03570 -11.35875 -11.25476 -11.16704 -10.82735 -10.56462 -9.49597 -8.33837 -8.18152 -6.26117 1.22966 1.37001 1.37950 1.48961 1.72898 2.27287 2.40634 2.87925 3.16364 3.85720 4.12458 4.20523 4.26402 4.44320 4.55828 4.60053 4.65244 4.80916 4.91571 4.98574 5.01499 5.07360 5.16862 5.28632 5.31596 5.45575 5.54603 5.70020 5.83299 6.26244 6.41528 6.50454 6.87395 6.96860 7.34667 7.41970 8.92672 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.027085 B = 0.007089 C = 0.005951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.548285 B = 3948.997516 C = 4703.849189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.130 3.870 3 N -0.383 5.383 4 C 0.089 3.911 5 C -0.337 4.337 6 C 0.327 3.673 7 N -0.707 5.707 8 C 0.178 3.822 9 H 0.061 0.939 10 C -0.152 4.152 11 C 0.022 3.978 12 C -0.522 4.522 13 H 0.048 0.952 14 C 0.005 3.995 15 N -0.930 5.930 16 Si 0.955 3.045 17 H -0.271 1.271 18 H -0.281 1.281 19 H -0.276 1.276 20 N -0.406 5.406 21 H 0.047 0.953 22 H 0.038 0.962 23 H 0.101 0.899 24 H 0.084 0.916 25 H 0.133 0.867 26 H 0.218 0.782 27 H 0.145 0.855 28 H 0.392 0.608 29 H 0.069 0.931 30 H 0.060 0.940 31 H 0.046 0.954 32 H 0.015 0.985 33 H -0.001 1.001 34 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.857 -17.777 6.066 19.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.011 3.989 3 N -0.166 5.166 4 C -0.058 4.058 5 C -0.369 4.369 6 C 0.069 3.931 7 N -0.345 5.345 8 C 0.072 3.928 9 H 0.079 0.921 10 C -0.211 4.211 11 C -0.016 4.016 12 C -0.560 4.560 13 H 0.067 0.933 14 C -0.193 4.193 15 N -0.570 5.570 16 Si 0.780 3.220 17 H -0.196 1.196 18 H -0.207 1.207 19 H -0.201 1.201 20 N -0.241 5.241 21 H 0.066 0.934 22 H 0.057 0.943 23 H 0.119 0.881 24 H 0.102 0.898 25 H 0.151 0.849 26 H 0.234 0.766 27 H 0.163 0.837 28 H 0.225 0.775 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.066 0.934 32 H 0.033 0.967 33 H 0.018 0.982 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.084 -18.213 5.319 19.408 hybrid contribution -0.698 1.131 0.272 1.357 sum 3.386 -17.082 5.591 18.290 Atomic orbital electron populations 1.22006 0.94706 1.03525 1.01557 1.21924 0.95510 0.76133 1.05356 1.48515 1.36690 1.10165 1.21253 1.22977 0.93438 0.93541 0.95864 1.21295 1.14053 0.98678 1.02889 1.19703 0.93670 0.87152 0.92530 1.43918 1.53000 1.05928 1.31659 1.20792 0.89988 0.84529 0.97471 0.92117 1.22180 0.96178 1.01854 1.00885 1.19260 0.94706 0.92137 0.95457 1.21461 1.02554 1.05476 1.26500 0.93335 1.25792 1.01900 0.95689 0.95925 1.70061 1.38898 1.11037 1.37035 0.85604 0.79852 0.77891 0.78607 1.19632 1.20691 1.20097 1.77297 1.30169 0.97569 1.19023 0.93368 0.94271 0.88069 0.89755 0.84909 0.76560 0.83715 0.77492 0.91248 0.92120 0.93440 0.96690 0.98220 0.92856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.03 10.09 71.98 0.73 -2.31 16 2 C 0.13 2.29 7.23 86.38 0.62 2.91 16 3 N -0.38 -10.73 3.68 -348.09 -1.28 -12.01 16 4 C 0.09 2.22 11.44 83.52 0.96 3.17 16 5 C -0.34 -10.98 9.92 22.11 0.22 -10.76 16 6 C 0.33 12.93 8.14 133.38 1.09 14.01 16 7 N -0.71 -29.98 5.00 -323.41 -1.62 -31.59 16 8 C 0.18 7.45 2.52 44.99 0.11 7.56 16 9 H 0.06 2.57 7.14 -2.38 -0.02 2.56 16 10 C -0.15 -5.26 9.50 71.98 0.68 -4.58 16 11 C 0.02 1.14 4.52 29.85 0.13 1.27 16 12 C -0.52 -29.86 8.84 25.60 0.23 -29.64 16 13 H 0.05 2.81 7.74 -2.91 -0.02 2.79 16 14 C 0.00 0.27 5.46 84.65 0.46 0.73 16 15 N -0.93 -56.43 13.29 21.45 0.28 -56.14 16 16 Si 0.95 45.85 29.54 68.60 2.03 47.88 16 17 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 18 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 19 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 20 N -0.41 -15.58 12.43 -54.55 -0.68 -16.26 16 21 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 22 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 23 H 0.10 1.21 8.14 -2.38 -0.02 1.19 16 24 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.13 1.17 8.07 -2.38 -0.02 1.15 16 26 H 0.22 2.87 8.06 -2.91 -0.02 2.85 16 27 H 0.15 4.42 7.45 -2.91 -0.02 4.40 16 28 H 0.39 17.55 8.73 -92.71 -0.81 16.74 16 29 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 30 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.01 0.81 8.14 -2.38 -0.02 0.79 16 33 H 0.00 -0.03 8.14 -2.38 -0.02 -0.05 16 34 H 0.26 15.05 8.31 -92.72 -0.77 14.28 16 Total: -1.00 -71.00 291.67 4.23 -66.77 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: 0.26 Total: 18.99 kcal Atomic # 6 Polarization: -22.85 SS G_CDS: 5.23 Total: -17.62 kcal Atomic # 7 Polarization: -112.72 SS G_CDS: -3.29 Total: -116.01 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.88 kcal Total: -71.00 4.23 -66.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695857364.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.175 kcal (2) G-P(sol) polarization free energy of solvation -70.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds