Wall clock time and date at job start Mon Mar 30 2020 02:35:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.47699 * 2 1 4 4 C 1.52999 * 109.47087 * 120.00142 * 2 1 3 5 5 C 1.50694 * 109.47327 * 184.99942 * 4 2 1 6 6 H 1.08006 * 119.99771 * 359.97438 * 5 4 2 7 7 C 1.37884 * 120.00356 * 179.97438 * 5 4 2 8 8 N 1.31512 * 119.99569 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00247 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47232 * 59.99592 * 9 7 5 11 11 H 1.48491 * 109.47314 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.46926 * 299.99998 * 9 7 5 13 13 N 1.46900 * 109.46874 * 239.99414 * 2 1 3 14 14 C 1.46899 * 110.99811 * 85.00717 * 13 2 1 15 15 C 1.53001 * 109.47222 * 179.97438 * 14 13 2 16 16 N 1.46500 * 109.47362 * 179.97438 * 15 14 13 17 17 C 1.36890 * 126.39499 * 269.96938 * 16 15 14 18 18 C 1.34669 * 106.81617 * 180.02562 * 17 16 15 19 19 N 1.34134 * 108.02026 * 0.02562 * 18 17 16 20 20 C 1.30493 * 109.25480 * 0.02562 * 19 18 17 21 21 H 1.09004 * 109.47000 * 300.00444 * 1 2 3 22 22 H 1.09001 * 109.47436 * 60.00003 * 1 2 3 23 23 H 1.08998 * 109.47699 * 179.97438 * 1 2 3 24 24 H 1.09008 * 109.46911 * 304.99353 * 4 2 1 25 25 H 1.08994 * 109.47506 * 64.99246 * 4 2 1 26 26 H 0.97001 * 119.99811 * 180.02562 * 8 7 5 27 27 H 1.00895 * 111.00301 * 321.04759 * 13 2 1 28 28 H 1.09004 * 109.47809 * 59.99470 * 14 13 2 29 29 H 1.09005 * 109.47210 * 299.99514 * 14 13 2 30 30 H 1.09000 * 109.47395 * 59.99533 * 15 14 13 31 31 H 1.08994 * 109.47038 * 299.99687 * 15 14 13 32 32 H 1.07996 * 126.59258 * 0.08195 * 17 16 15 33 33 H 1.08002 * 125.99042 * 180.26007 * 18 17 16 34 34 H 1.08006 * 125.64571 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 3.5418 -0.6150 1.3127 6 1 4.0789 -0.0862 0.5392 7 6 4.2303 -1.1928 2.3584 8 7 3.5762 -1.8362 3.3005 9 14 6.0919 -1.0604 2.4375 10 1 6.4843 0.3706 2.4967 11 1 6.5869 -1.7605 3.6498 12 1 6.6844 -1.6865 1.2283 13 7 2.0195 -0.6926 -1.1994 14 6 2.0825 0.2224 -2.3468 15 6 2.5962 -0.5331 -3.5741 16 7 2.6583 0.3793 -4.7186 17 6 1.6583 0.6179 -5.6224 18 6 2.1360 1.5171 -6.5037 19 7 3.3937 1.8189 -6.1482 20 6 3.7135 1.1404 -5.0803 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 1.6053 -0.2617 2.1370 25 1 1.7515 -1.7715 1.2057 26 1 4.0604 -2.2423 4.0364 27 1 1.4495 -1.4980 -1.4099 28 1 2.7589 1.0461 -2.1183 29 1 1.0871 0.6162 -2.5526 30 1 1.9201 -1.3570 -3.8030 31 1 3.5916 -0.9265 -3.3682 32 1 0.6749 0.1716 -5.6272 33 1 1.5992 1.9266 -7.3467 34 1 4.6645 1.1814 -4.5699 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695861355.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:31 Heat of formation + Delta-G solvation = 53.452167 kcal Electronic energy + Delta-G solvation = -14828.170020 eV Core-core repulsion = 12375.834381 eV Total energy + Delta-G solvation = -2452.335639 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.99140 -37.19972 -34.49844 -32.62610 -30.80296 -29.42421 -27.40276 -27.01152 -23.33996 -22.45056 -21.31185 -20.85797 -19.83466 -17.29890 -16.31817 -15.54062 -15.09697 -14.67143 -14.49782 -14.09055 -13.79730 -13.65437 -13.20478 -12.65353 -12.59354 -12.08154 -11.82873 -11.58236 -11.30545 -11.03342 -10.66741 -10.53407 -10.14013 -9.98803 -9.65619 -9.33050 -9.05524 -8.53088 -8.29952 -7.79991 -5.92374 -3.90701 2.06602 2.78041 3.18308 3.37568 3.41967 3.44557 4.52389 4.57500 4.66726 4.74039 4.95313 5.08091 5.31021 5.39080 5.44954 5.56455 5.63038 5.73373 5.78407 5.90853 5.95230 6.28772 6.34684 6.51735 6.72403 6.90622 7.17715 7.39379 7.58128 7.88088 7.92464 8.07651 8.07987 8.53363 9.13947 9.70902 11.19633 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.030895 B = 0.005877 C = 0.005098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.085202 B = 4762.980814 C = 5491.171298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.091 3.909 3 H 0.065 0.935 4 C 0.033 3.967 5 C -0.492 4.492 6 H 0.057 0.943 7 C 0.051 3.949 8 N -0.903 5.903 9 Si 0.890 3.110 10 H -0.279 1.279 11 H -0.290 1.290 12 H -0.278 1.278 13 N -0.660 5.660 14 C 0.048 3.952 15 C 0.104 3.896 16 N -0.452 5.452 17 C -0.059 4.059 18 C -0.036 4.036 19 N -0.502 5.502 20 C 0.185 3.815 21 H 0.059 0.941 22 H 0.036 0.964 23 H 0.052 0.948 24 H 0.019 0.981 25 H 0.017 0.983 26 H 0.258 0.742 27 H 0.332 0.668 28 H 0.076 0.924 29 H 0.025 0.975 30 H 0.088 0.912 31 H 0.106 0.894 32 H 0.170 0.830 33 H 0.166 0.834 34 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.130 2.472 -13.799 14.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.018 4.018 3 H 0.083 0.917 4 C -0.004 4.004 5 C -0.530 4.530 6 H 0.075 0.925 7 C -0.149 4.149 8 N -0.544 5.544 9 Si 0.719 3.281 10 H -0.205 1.205 11 H -0.216 1.216 12 H -0.204 1.204 13 N -0.291 5.291 14 C -0.083 4.083 15 C -0.019 4.019 16 N -0.135 5.135 17 C -0.192 4.192 18 C -0.184 4.184 19 N -0.220 5.220 20 C -0.098 4.098 21 H 0.078 0.922 22 H 0.055 0.945 23 H 0.071 0.929 24 H 0.037 0.963 25 H 0.036 0.964 26 H 0.068 0.932 27 H 0.150 0.850 28 H 0.094 0.906 29 H 0.044 0.956 30 H 0.107 0.893 31 H 0.124 0.876 32 H 0.187 0.813 33 H 0.183 0.817 34 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -3.921 2.908 -13.747 14.588 hybrid contribution -0.543 -0.503 0.389 0.836 sum -4.464 2.405 -13.358 14.288 Atomic orbital electron populations 1.22553 0.99314 1.01296 1.00770 1.21809 0.90012 0.98205 0.91790 0.91655 1.19115 0.96312 0.95398 0.89587 1.21082 0.91811 1.33196 1.06944 0.92490 1.25006 0.98057 0.95830 0.95980 1.69949 1.35362 1.36824 1.12279 0.86688 0.86267 0.77994 0.77149 1.20518 1.21585 1.20395 1.60503 1.58045 1.08424 1.02119 1.22242 0.99288 0.96470 0.90304 1.21960 1.05185 0.91207 0.83543 1.45632 1.12291 1.33432 1.22115 1.22727 0.95753 1.05877 0.94879 1.22264 0.92963 1.01100 1.02101 1.70289 1.14508 1.24532 1.12719 1.25062 0.94557 0.93982 0.96158 0.92234 0.94494 0.92904 0.96315 0.96425 0.93210 0.85023 0.90561 0.95646 0.89339 0.87556 0.81265 0.81670 0.77902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.85 9.16 37.15 0.34 -2.51 16 2 C 0.09 1.73 2.53 -67.72 -0.17 1.56 16 3 H 0.07 1.29 7.80 -51.93 -0.40 0.89 16 4 C 0.03 0.82 4.65 -27.89 -0.13 0.69 16 5 C -0.49 -13.46 8.84 -34.44 -0.30 -13.77 16 6 H 0.06 1.54 7.74 -52.48 -0.41 1.14 16 7 C 0.05 1.44 5.46 -17.82 -0.10 1.34 16 8 N -0.90 -26.91 13.29 55.43 0.74 -26.18 16 9 Si 0.89 21.69 29.54 -169.99 -5.02 16.66 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 13 N -0.66 -10.97 5.96 -106.73 -0.64 -11.61 16 14 C 0.05 0.65 5.81 -3.82 -0.02 0.62 16 15 C 0.10 1.16 6.41 -4.04 -0.03 1.13 16 16 N -0.45 -5.39 2.75 -118.58 -0.33 -5.71 16 17 C -0.06 -0.66 11.58 -16.56 -0.19 -0.85 16 18 C -0.04 -0.45 11.87 -17.81 -0.21 -0.66 16 19 N -0.50 -7.31 11.25 -14.66 -0.16 -7.47 16 20 C 0.19 2.38 12.56 -90.38 -1.14 1.24 16 21 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 22 H 0.04 0.51 7.45 -51.93 -0.39 0.12 16 23 H 0.05 0.80 8.13 -51.93 -0.42 0.38 16 24 H 0.02 0.49 8.14 -51.92 -0.42 0.07 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 27 H 0.33 4.99 8.47 -39.29 -0.33 4.66 16 28 H 0.08 1.15 8.06 -51.93 -0.42 0.73 16 29 H 0.03 0.34 7.44 -51.93 -0.39 -0.05 16 30 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.11 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.17 1.42 8.06 -52.49 -0.42 1.00 16 33 H 0.17 1.62 8.06 -52.49 -0.42 1.19 16 34 H 0.20 2.09 8.06 -52.48 -0.42 1.67 16 LS Contribution 291.27 15.07 4.39 4.39 Total: -1.00 -31.52 291.27 -8.25 -39.77 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -5.28 Total: 1.35 kcal Atomic # 6 Polarization: -9.25 SS G_CDS: -1.95 Total: -11.20 kcal Atomic # 7 Polarization: -50.58 SS G_CDS: -0.39 Total: -50.97 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -31.52 -8.25 -39.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695861355.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.224 kcal (2) G-P(sol) polarization free energy of solvation -31.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds