Wall clock time and date at job start Mon Mar 30 2020 02:35:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.47699 * 2 1 4 4 C 1.52999 * 109.47087 * 120.00142 * 2 1 3 5 5 C 1.50694 * 109.47327 * 184.99942 * 4 2 1 6 6 H 1.08006 * 119.99771 * 359.97438 * 5 4 2 7 7 C 1.37884 * 120.00356 * 179.97438 * 5 4 2 8 8 N 1.31512 * 119.99569 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00247 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47232 * 59.99592 * 9 7 5 11 11 H 1.48491 * 109.47314 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.46926 * 299.99998 * 9 7 5 13 13 N 1.46900 * 109.46874 * 239.99414 * 2 1 3 14 14 C 1.46899 * 110.99811 * 85.00717 * 13 2 1 15 15 C 1.53001 * 109.47222 * 179.97438 * 14 13 2 16 16 N 1.46500 * 109.47362 * 179.97438 * 15 14 13 17 17 C 1.36890 * 126.39499 * 269.96938 * 16 15 14 18 18 C 1.34669 * 106.81617 * 180.02562 * 17 16 15 19 19 N 1.34134 * 108.02026 * 0.02562 * 18 17 16 20 20 C 1.30493 * 109.25480 * 0.02562 * 19 18 17 21 21 H 1.09004 * 109.47000 * 300.00444 * 1 2 3 22 22 H 1.09001 * 109.47436 * 60.00003 * 1 2 3 23 23 H 1.08998 * 109.47699 * 179.97438 * 1 2 3 24 24 H 1.09008 * 109.46911 * 304.99353 * 4 2 1 25 25 H 1.08994 * 109.47506 * 64.99246 * 4 2 1 26 26 H 0.97001 * 119.99811 * 180.02562 * 8 7 5 27 27 H 1.00895 * 111.00301 * 321.04759 * 13 2 1 28 28 H 1.09004 * 109.47809 * 59.99470 * 14 13 2 29 29 H 1.09005 * 109.47210 * 299.99514 * 14 13 2 30 30 H 1.09000 * 109.47395 * 59.99533 * 15 14 13 31 31 H 1.08994 * 109.47038 * 299.99687 * 15 14 13 32 32 H 1.07996 * 126.59258 * 0.08195 * 17 16 15 33 33 H 1.08002 * 125.99042 * 180.26007 * 18 17 16 34 34 H 1.08006 * 125.64571 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 3.5418 -0.6150 1.3127 6 1 4.0789 -0.0862 0.5392 7 6 4.2303 -1.1928 2.3584 8 7 3.5762 -1.8362 3.3005 9 14 6.0919 -1.0604 2.4375 10 1 6.4843 0.3706 2.4967 11 1 6.5869 -1.7605 3.6498 12 1 6.6844 -1.6865 1.2283 13 7 2.0195 -0.6926 -1.1994 14 6 2.0825 0.2224 -2.3468 15 6 2.5962 -0.5331 -3.5741 16 7 2.6583 0.3793 -4.7186 17 6 1.6583 0.6179 -5.6224 18 6 2.1360 1.5171 -6.5037 19 7 3.3937 1.8189 -6.1482 20 6 3.7135 1.1404 -5.0803 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 1.6053 -0.2617 2.1370 25 1 1.7515 -1.7715 1.2057 26 1 4.0604 -2.2423 4.0364 27 1 1.4495 -1.4980 -1.4099 28 1 2.7589 1.0461 -2.1183 29 1 1.0871 0.6162 -2.5526 30 1 1.9201 -1.3570 -3.8030 31 1 3.5916 -0.9265 -3.3682 32 1 0.6749 0.1716 -5.6272 33 1 1.5992 1.9266 -7.3467 34 1 4.6645 1.1814 -4.5699 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695861355.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:31 Heat of formation + Delta-G solvation = 34.023743 kcal Electronic energy + Delta-G solvation = -14829.012500 eV Core-core repulsion = 12375.834381 eV Total energy + Delta-G solvation = -2453.178118 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.90124 -38.56401 -35.73151 -34.51946 -32.17557 -30.33791 -29.22109 -28.12366 -25.12316 -23.69496 -22.22339 -21.86272 -21.32332 -18.38402 -18.22776 -16.83535 -16.40400 -16.12071 -15.89375 -15.17474 -14.91915 -14.73172 -14.32639 -14.09998 -13.93866 -13.49579 -13.25131 -13.13511 -12.90454 -12.54342 -12.38592 -12.23813 -11.90898 -11.23682 -11.11229 -10.94200 -10.54778 -10.46831 -9.42705 -9.11686 -8.08797 -6.13727 1.16761 1.43809 1.45595 1.53030 1.87499 2.24375 2.48420 3.23655 3.42640 3.77430 3.90554 3.99595 4.13255 4.21671 4.37282 4.43057 4.52257 4.56464 4.66088 4.82991 4.85794 4.96934 5.22052 5.24627 5.40862 5.51112 5.65594 5.86592 5.90760 6.23518 6.28991 6.43572 6.67848 7.00365 7.16018 7.52179 9.03099 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.030895 B = 0.005877 C = 0.005098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.085202 B = 4762.980814 C = 5491.171298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.101 3.899 3 H 0.055 0.945 4 C 0.036 3.964 5 C -0.500 4.500 6 H 0.057 0.943 7 C -0.005 4.005 8 N -0.941 5.941 9 Si 0.956 3.044 10 H -0.272 1.272 11 H -0.289 1.289 12 H -0.269 1.269 13 N -0.675 5.675 14 C 0.058 3.942 15 C 0.113 3.887 16 N -0.453 5.453 17 C -0.052 4.052 18 C -0.058 4.058 19 N -0.537 5.537 20 C 0.171 3.829 21 H 0.054 0.946 22 H 0.063 0.937 23 H 0.057 0.943 24 H -0.009 1.009 25 H -0.005 1.005 26 H 0.258 0.742 27 H 0.343 0.657 28 H 0.058 0.942 29 H 0.036 0.964 30 H 0.112 0.888 31 H 0.105 0.895 32 H 0.201 0.799 33 H 0.184 0.816 34 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.338 2.434 -15.174 16.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.008 4.008 3 H 0.074 0.926 4 C -0.001 4.001 5 C -0.538 4.538 6 H 0.076 0.924 7 C -0.201 4.201 8 N -0.583 5.583 9 Si 0.782 3.218 10 H -0.197 1.197 11 H -0.215 1.215 12 H -0.194 1.194 13 N -0.307 5.307 14 C -0.073 4.073 15 C -0.009 4.009 16 N -0.135 5.135 17 C -0.185 4.185 18 C -0.205 4.205 19 N -0.257 5.257 20 C -0.112 4.112 21 H 0.073 0.927 22 H 0.082 0.918 23 H 0.076 0.924 24 H 0.009 0.991 25 H 0.013 0.987 26 H 0.067 0.933 27 H 0.162 0.838 28 H 0.076 0.924 29 H 0.054 0.946 30 H 0.130 0.870 31 H 0.123 0.877 32 H 0.218 0.782 33 H 0.201 0.799 34 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -4.135 2.876 -15.147 15.963 hybrid contribution -0.513 -0.478 0.794 1.060 sum -4.648 2.398 -14.353 15.276 Atomic orbital electron populations 1.22409 0.96570 1.02033 1.01872 1.21427 0.92135 0.96723 0.90542 0.92640 1.19003 0.95118 0.94400 0.91579 1.21457 0.93367 1.32404 1.06620 0.92442 1.25852 1.02814 0.95694 0.95786 1.70082 1.37164 1.38042 1.13006 0.85646 0.80676 0.78233 0.77288 1.19749 1.21493 1.19444 1.60261 1.58574 1.09350 1.02468 1.22126 0.99519 0.95624 0.89997 1.21865 1.05626 0.91102 0.82309 1.45686 1.12292 1.33332 1.22224 1.23234 0.96517 1.04970 0.93828 1.22710 0.92655 1.01892 1.03271 1.70261 1.15916 1.25683 1.13800 1.25419 0.95499 0.94097 0.96178 0.92670 0.91820 0.92359 0.99109 0.98688 0.93295 0.83804 0.92363 0.94589 0.86996 0.87699 0.78210 0.79913 0.76492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.05 9.16 71.98 0.66 -4.39 16 2 C 0.10 3.77 2.53 44.91 0.11 3.89 16 3 H 0.06 2.16 7.80 -2.39 -0.02 2.14 16 4 C 0.04 1.82 4.65 29.85 0.14 1.96 16 5 C -0.50 -27.53 8.84 25.60 0.23 -27.30 16 6 H 0.06 3.09 7.74 -2.91 -0.02 3.07 16 7 C -0.01 -0.31 5.46 84.66 0.46 0.15 16 8 N -0.94 -56.91 13.29 21.45 0.28 -56.63 16 9 Si 0.96 44.46 29.54 68.60 2.03 46.48 16 10 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 11 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 12 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 13 N -0.67 -21.30 5.96 -491.57 -2.93 -24.23 16 14 C 0.06 1.43 5.81 86.30 0.50 1.93 16 15 C 0.11 2.22 6.41 86.38 0.55 2.77 16 16 N -0.45 -9.71 2.75 -529.07 -1.46 -11.17 16 17 C -0.05 -1.02 11.58 83.08 0.96 -0.06 16 18 C -0.06 -1.34 11.87 83.52 0.99 -0.35 16 19 N -0.54 -15.11 11.25 -200.31 -2.25 -17.37 16 20 C 0.17 4.16 12.56 180.27 2.26 6.43 16 21 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 22 H 0.06 1.57 7.45 -2.39 -0.02 1.55 16 23 H 0.06 1.67 8.13 -2.39 -0.02 1.65 16 24 H -0.01 -0.51 8.14 -2.38 -0.02 -0.53 16 25 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 26 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 27 H 0.34 9.55 8.47 -89.70 -0.76 8.79 16 28 H 0.06 1.67 8.06 -2.39 -0.02 1.65 16 29 H 0.04 0.84 7.44 -2.38 -0.02 0.82 16 30 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.20 2.53 8.06 -2.91 -0.02 2.50 16 33 H 0.18 3.26 8.06 -2.91 -0.02 3.23 16 34 H 0.22 4.28 8.06 -2.91 -0.02 4.25 16 Total: -1.00 -67.86 291.27 2.85 -65.01 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: 0.31 Total: 12.87 kcal Atomic # 6 Polarization: -21.84 SS G_CDS: 6.87 Total: -14.97 kcal Atomic # 7 Polarization: -103.04 SS G_CDS: -6.36 Total: -109.39 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.48 kcal Total: -67.86 2.85 -65.01 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695861355.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.031 kcal (2) G-P(sol) polarization free energy of solvation -67.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds