Wall clock time and date at job start Mon Mar 30 2020 02:35:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47016 * 2 1 4 4 C 1.53004 * 109.47200 * 239.99587 * 2 1 3 5 5 C 1.50696 * 109.47075 * 174.99879 * 4 2 1 6 6 H 1.08011 * 120.00236 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00418 * 180.02562 * 5 4 2 8 8 N 1.31510 * 120.00728 * 180.02562 * 7 5 4 9 9 Si 1.86805 * 119.99576 * 0.02562 * 7 5 4 10 10 H 1.48503 * 109.47143 * 90.00094 * 9 7 5 11 11 H 1.48508 * 109.47037 * 210.00092 * 9 7 5 12 12 H 1.48501 * 109.47086 * 330.00042 * 9 7 5 13 13 N 1.46900 * 109.47174 * 120.00021 * 2 1 3 14 14 C 1.46899 * 110.99811 * 275.00408 * 13 2 1 15 15 C 1.53001 * 109.47222 * 179.97438 * 14 13 2 16 16 N 1.46500 * 109.47362 * 179.97438 * 15 14 13 17 17 C 1.36890 * 126.39499 * 269.96938 * 16 15 14 18 18 C 1.34669 * 106.81617 * 180.02562 * 17 16 15 19 19 N 1.34134 * 108.02026 * 0.02562 * 18 17 16 20 20 C 1.30493 * 109.25480 * 0.02562 * 19 18 17 21 21 H 1.09002 * 109.47016 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.47303 * 299.99830 * 1 2 3 23 23 H 1.08998 * 109.46958 * 60.00808 * 1 2 3 24 24 H 1.08997 * 109.47567 * 295.00086 * 4 2 1 25 25 H 1.09001 * 109.46550 * 55.00320 * 4 2 1 26 26 H 0.97000 * 120.00632 * 180.02562 * 8 7 5 27 27 H 1.00899 * 111.00268 * 38.94999 * 13 2 1 28 28 H 1.09004 * 109.47809 * 59.99470 * 14 13 2 29 29 H 1.09005 * 109.47210 * 299.99514 * 14 13 2 30 30 H 1.09000 * 109.47395 * 59.99533 * 15 14 13 31 31 H 1.08994 * 109.47038 * 299.99687 * 15 14 13 32 32 H 1.07996 * 126.59258 * 0.08195 * 17 16 15 33 33 H 1.08002 * 125.99042 * 180.26007 * 18 17 16 34 34 H 1.08006 * 125.64571 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7214 -1.2492 5 6 3.5419 -0.6150 -1.3127 6 1 4.0791 -0.0861 -0.5391 7 6 4.2305 -1.1927 -2.3582 8 7 5.5411 -1.1004 -2.4134 9 14 3.3014 -2.1068 -3.6965 10 1 2.9407 -1.1610 -4.7831 11 1 4.1598 -3.1872 -4.2454 12 1 2.0653 -2.6988 -3.1249 13 7 2.0197 -0.6925 1.1994 14 6 2.0824 0.2226 2.3469 15 6 2.5950 -0.5331 3.5745 16 7 2.6581 0.3796 4.7187 17 6 3.7284 1.1506 5.0846 18 6 3.3592 1.8322 6.1858 19 7 2.0981 1.4863 6.4846 20 6 1.6721 0.6160 5.6106 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5137 -0.8900 24 1 1.7517 -1.7716 -1.2056 25 1 1.6054 -0.2618 -2.1369 26 1 6.0255 -1.5065 -3.1491 27 1 1.4496 -1.4979 1.4101 28 1 1.0870 0.6164 2.5525 29 1 2.7588 1.0462 2.1182 30 1 3.5903 -0.9272 3.3692 31 1 1.9183 -1.3564 3.8030 32 1 4.6846 1.2030 4.5855 33 1 3.9700 2.5368 6.7306 34 1 0.6927 0.1607 5.6016 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695861356.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:33 Heat of formation + Delta-G solvation = 57.407837 kcal Electronic energy + Delta-G solvation = -14839.286045 eV Core-core repulsion = 12387.121937 eV Total energy + Delta-G solvation = -2452.164108 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.96805 -37.29276 -34.52946 -32.56791 -30.97496 -29.40297 -27.97521 -27.05594 -23.21656 -22.29767 -21.28474 -20.84491 -19.84432 -17.28003 -16.64713 -15.72622 -15.06856 -14.64682 -14.47049 -14.05479 -13.79083 -13.59660 -13.17217 -12.91089 -12.45981 -12.31777 -12.10391 -11.84074 -11.38912 -11.19945 -10.77049 -10.41990 -9.97935 -9.86191 -9.67477 -9.53074 -9.10747 -8.49823 -8.47644 -7.86883 -5.96196 -3.90756 2.10034 2.79708 3.19970 3.32043 3.40180 3.42199 4.49859 4.52910 4.68066 4.71577 4.98722 5.05612 5.30809 5.38401 5.45414 5.49894 5.59242 5.66503 5.76053 5.79323 5.94789 6.22308 6.33291 6.37747 6.68225 6.75916 7.05446 7.16644 7.22737 7.61179 7.78897 7.91481 8.08547 8.65631 9.13685 9.66668 11.17822 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.041516 B = 0.005461 C = 0.004994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.271212 B = 5125.614010 C = 5605.638803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.100 3.900 3 H 0.071 0.929 4 C -0.004 4.004 5 C -0.492 4.492 6 H 0.075 0.925 7 C 0.061 3.939 8 N -0.908 5.908 9 Si 0.875 3.125 10 H -0.280 1.280 11 H -0.290 1.290 12 H -0.268 1.268 13 N -0.659 5.659 14 C 0.049 3.951 15 C 0.104 3.896 16 N -0.452 5.452 17 C -0.048 4.048 18 C -0.039 4.039 19 N -0.501 5.501 20 C 0.175 3.825 21 H 0.052 0.948 22 H 0.041 0.959 23 H 0.059 0.941 24 H 0.017 0.983 25 H 0.014 0.986 26 H 0.260 0.740 27 H 0.332 0.668 28 H 0.026 0.974 29 H 0.077 0.923 30 H 0.105 0.895 31 H 0.090 0.910 32 H 0.175 0.825 33 H 0.167 0.833 34 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.072 1.288 11.398 14.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.009 4.009 3 H 0.089 0.911 4 C -0.042 4.042 5 C -0.530 4.530 6 H 0.093 0.907 7 C -0.139 4.139 8 N -0.549 5.549 9 Si 0.703 3.297 10 H -0.206 1.206 11 H -0.216 1.216 12 H -0.193 1.193 13 N -0.290 5.290 14 C -0.081 4.081 15 C -0.019 4.019 16 N -0.135 5.135 17 C -0.182 4.182 18 C -0.187 4.187 19 N -0.220 5.220 20 C -0.107 4.107 21 H 0.071 0.929 22 H 0.060 0.940 23 H 0.078 0.922 24 H 0.035 0.965 25 H 0.032 0.968 26 H 0.070 0.930 27 H 0.150 0.850 28 H 0.044 0.956 29 H 0.096 0.904 30 H 0.124 0.876 31 H 0.108 0.892 32 H 0.192 0.808 33 H 0.184 0.816 34 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -7.708 1.518 11.657 14.057 hybrid contribution -0.843 -0.755 -1.353 1.764 sum -8.551 0.763 10.304 13.412 Atomic orbital electron populations 1.22593 0.99183 1.01361 1.01120 1.21564 0.89875 0.98327 0.91143 0.91090 1.19608 0.97876 0.95428 0.91265 1.21009 0.89463 1.33969 1.08582 0.90672 1.25016 0.94692 0.96251 0.97897 1.69904 1.06467 1.46172 1.32320 0.86865 0.80172 0.80014 0.82614 1.20604 1.21593 1.19298 1.60410 1.57938 1.08460 1.02166 1.22229 0.99287 0.96451 0.90180 1.21944 1.05283 0.91085 0.83576 1.45603 1.12217 1.33106 1.22546 1.22860 0.94526 0.99579 1.01202 1.22272 0.93714 1.04451 0.98238 1.70256 1.11655 1.13908 1.26142 1.24925 0.95893 1.00543 0.89385 0.92892 0.94011 0.92225 0.96493 0.96828 0.93012 0.85041 0.95578 0.90417 0.87641 0.89160 0.80796 0.81556 0.78314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.68 9.16 37.16 0.34 -2.34 16 2 C 0.10 1.82 2.53 -67.71 -0.17 1.65 16 3 H 0.07 1.37 7.80 -51.93 -0.40 0.96 16 4 C 0.00 -0.09 3.72 -27.88 -0.10 -0.20 16 5 C -0.49 -13.59 9.39 -34.44 -0.32 -13.91 16 6 H 0.08 2.27 7.99 -52.48 -0.42 1.85 16 7 C 0.06 1.76 5.47 -17.82 -0.10 1.66 16 8 N -0.91 -27.90 13.96 55.43 0.77 -27.13 16 9 Si 0.88 21.49 27.47 -169.99 -4.67 16.82 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 12 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 13 N -0.66 -10.75 5.96 -106.72 -0.64 -11.38 16 14 C 0.05 0.67 5.81 -3.82 -0.02 0.64 16 15 C 0.10 1.18 6.41 -4.04 -0.03 1.15 16 16 N -0.45 -5.47 2.75 -118.58 -0.33 -5.79 16 17 C -0.05 -0.59 11.58 -16.56 -0.19 -0.78 16 18 C -0.04 -0.50 11.87 -17.81 -0.21 -0.71 16 19 N -0.50 -7.21 11.25 -14.66 -0.16 -7.37 16 20 C 0.17 2.14 12.56 -90.38 -1.14 1.00 16 21 H 0.05 0.73 8.13 -51.93 -0.42 0.31 16 22 H 0.04 0.54 7.45 -51.93 -0.39 0.15 16 23 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 24 H 0.02 0.39 7.20 -51.93 -0.37 0.01 16 25 H 0.01 0.31 7.57 -51.93 -0.39 -0.08 16 26 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 27 H 0.33 4.74 8.47 -39.29 -0.33 4.41 16 28 H 0.03 0.34 7.44 -51.93 -0.39 -0.05 16 29 H 0.08 1.21 8.06 -51.93 -0.42 0.79 16 30 H 0.11 1.28 8.14 -51.93 -0.42 0.85 16 31 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.17 1.81 8.06 -52.49 -0.42 1.39 16 33 H 0.17 1.74 8.06 -52.49 -0.42 1.31 16 34 H 0.20 1.75 8.06 -52.48 -0.42 1.33 16 LS Contribution 287.67 15.07 4.34 4.34 Total: -1.00 -32.25 287.67 -7.87 -40.13 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -5.24 Total: 2.23 kcal Atomic # 6 Polarization: -9.89 SS G_CDS: -1.94 Total: -11.83 kcal Atomic # 7 Polarization: -51.33 SS G_CDS: -0.35 Total: -51.68 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.67 Total: 16.82 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -32.25 -7.87 -40.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695861356.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.535 kcal (2) G-P(sol) polarization free energy of solvation -32.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds