Wall clock time and date at job start Mon Mar 30 2020 02:35:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47016 * 2 1 4 4 C 1.53004 * 109.47200 * 239.99587 * 2 1 3 5 5 C 1.50696 * 109.47075 * 174.99879 * 4 2 1 6 6 H 1.08011 * 120.00236 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00418 * 180.02562 * 5 4 2 8 8 N 1.31510 * 120.00728 * 180.02562 * 7 5 4 9 9 Si 1.86805 * 119.99576 * 0.02562 * 7 5 4 10 10 H 1.48503 * 109.47143 * 90.00094 * 9 7 5 11 11 H 1.48508 * 109.47037 * 210.00092 * 9 7 5 12 12 H 1.48501 * 109.47086 * 330.00042 * 9 7 5 13 13 N 1.46900 * 109.47174 * 120.00021 * 2 1 3 14 14 C 1.46899 * 110.99811 * 275.00408 * 13 2 1 15 15 C 1.53001 * 109.47222 * 179.97438 * 14 13 2 16 16 N 1.46500 * 109.47362 * 179.97438 * 15 14 13 17 17 C 1.36890 * 126.39499 * 269.96938 * 16 15 14 18 18 C 1.34669 * 106.81617 * 180.02562 * 17 16 15 19 19 N 1.34134 * 108.02026 * 0.02562 * 18 17 16 20 20 C 1.30493 * 109.25480 * 0.02562 * 19 18 17 21 21 H 1.09002 * 109.47016 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.47303 * 299.99830 * 1 2 3 23 23 H 1.08998 * 109.46958 * 60.00808 * 1 2 3 24 24 H 1.08997 * 109.47567 * 295.00086 * 4 2 1 25 25 H 1.09001 * 109.46550 * 55.00320 * 4 2 1 26 26 H 0.97000 * 120.00632 * 180.02562 * 8 7 5 27 27 H 1.00899 * 111.00268 * 38.94999 * 13 2 1 28 28 H 1.09004 * 109.47809 * 59.99470 * 14 13 2 29 29 H 1.09005 * 109.47210 * 299.99514 * 14 13 2 30 30 H 1.09000 * 109.47395 * 59.99533 * 15 14 13 31 31 H 1.08994 * 109.47038 * 299.99687 * 15 14 13 32 32 H 1.07996 * 126.59258 * 0.08195 * 17 16 15 33 33 H 1.08002 * 125.99042 * 180.26007 * 18 17 16 34 34 H 1.08006 * 125.64571 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7214 -1.2492 5 6 3.5419 -0.6150 -1.3127 6 1 4.0791 -0.0861 -0.5391 7 6 4.2305 -1.1927 -2.3582 8 7 5.5411 -1.1004 -2.4134 9 14 3.3014 -2.1068 -3.6965 10 1 2.9407 -1.1610 -4.7831 11 1 4.1598 -3.1872 -4.2454 12 1 2.0653 -2.6988 -3.1249 13 7 2.0197 -0.6925 1.1994 14 6 2.0824 0.2226 2.3469 15 6 2.5950 -0.5331 3.5745 16 7 2.6581 0.3796 4.7187 17 6 3.7284 1.1506 5.0846 18 6 3.3592 1.8322 6.1858 19 7 2.0981 1.4863 6.4846 20 6 1.6721 0.6160 5.6106 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5137 -0.8900 24 1 1.7517 -1.7716 -1.2056 25 1 1.6054 -0.2618 -2.1369 26 1 6.0255 -1.5065 -3.1491 27 1 1.4496 -1.4979 1.4101 28 1 1.0870 0.6164 2.5525 29 1 2.7588 1.0462 2.1182 30 1 3.5903 -0.9272 3.3692 31 1 1.9183 -1.3564 3.8030 32 1 4.6846 1.2030 4.5855 33 1 3.9700 2.5368 6.7306 34 1 0.6927 0.1607 5.6016 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695861356.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:33 Heat of formation + Delta-G solvation = 36.454060 kcal Electronic energy + Delta-G solvation = -14840.194669 eV Core-core repulsion = 12387.121937 eV Total energy + Delta-G solvation = -2453.072732 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.91437 -38.61104 -35.73859 -34.50332 -32.37471 -30.37291 -29.66988 -28.14353 -24.80616 -23.64826 -22.23945 -21.87255 -21.30790 -18.77062 -18.24338 -16.94854 -16.27301 -16.06062 -15.91000 -15.21944 -14.97637 -14.76097 -14.48638 -14.14997 -13.95910 -13.73199 -13.44972 -13.15417 -12.96974 -12.45298 -12.26039 -12.13404 -11.62167 -11.47425 -11.17691 -10.96600 -10.67383 -10.55162 -9.45274 -9.12188 -8.16768 -6.15925 1.15388 1.39417 1.41209 1.52056 1.86160 2.22858 2.43617 3.17095 3.40909 3.75634 3.88234 3.97421 4.10763 4.17461 4.34418 4.39790 4.51990 4.56221 4.64227 4.81592 4.85254 4.95819 5.13525 5.19753 5.28357 5.38315 5.51135 5.76627 5.81782 6.20953 6.30497 6.47537 6.69670 6.92243 7.13390 7.45183 9.00670 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.041516 B = 0.005461 C = 0.004994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.271212 B = 5125.614010 C = 5605.638803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.104 3.896 3 H 0.050 0.950 4 C -0.004 4.004 5 C -0.491 4.491 6 H 0.032 0.968 7 C -0.005 4.005 8 N -0.961 5.961 9 Si 0.946 3.054 10 H -0.272 1.272 11 H -0.292 1.292 12 H -0.245 1.245 13 N -0.680 5.680 14 C 0.060 3.940 15 C 0.114 3.886 16 N -0.455 5.455 17 C -0.061 4.061 18 C -0.053 4.053 19 N -0.536 5.536 20 C 0.178 3.822 21 H 0.065 0.935 22 H 0.061 0.939 23 H 0.062 0.938 24 H 0.022 0.978 25 H 0.018 0.982 26 H 0.260 0.740 27 H 0.347 0.653 28 H 0.042 0.958 29 H 0.048 0.952 30 H 0.094 0.906 31 H 0.121 0.879 32 H 0.185 0.815 33 H 0.182 0.818 34 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.605 0.288 11.458 15.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.006 4.006 3 H 0.068 0.932 4 C -0.041 4.041 5 C -0.529 4.529 6 H 0.050 0.950 7 C -0.200 4.200 8 N -0.603 5.603 9 Si 0.771 3.229 10 H -0.198 1.198 11 H -0.218 1.218 12 H -0.168 1.168 13 N -0.312 5.312 14 C -0.070 4.070 15 C -0.009 4.009 16 N -0.137 5.137 17 C -0.194 4.194 18 C -0.199 4.199 19 N -0.255 5.255 20 C -0.104 4.104 21 H 0.084 0.916 22 H 0.080 0.920 23 H 0.081 0.919 24 H 0.040 0.960 25 H 0.036 0.964 26 H 0.069 0.931 27 H 0.166 0.834 28 H 0.060 0.940 29 H 0.067 0.933 30 H 0.112 0.888 31 H 0.139 0.861 32 H 0.202 0.798 33 H 0.199 0.801 34 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -10.263 0.525 11.738 15.601 hybrid contribution 0.003 -0.381 -1.297 1.352 sum -10.260 0.144 10.441 14.639 Atomic orbital electron populations 1.22434 0.95660 1.02614 1.02317 1.21317 0.92553 0.96548 0.90166 0.93165 1.19585 0.94328 0.96303 0.93931 1.21309 0.92215 1.32389 1.06983 0.94955 1.25974 0.95498 0.97642 1.00877 1.70082 1.08568 1.48097 1.33575 0.85721 0.79348 0.78551 0.79270 1.19778 1.21789 1.16843 1.60204 1.58824 1.09549 1.02606 1.22079 0.99470 0.95447 0.90040 1.21857 1.05331 0.91230 0.82472 1.45664 1.12225 1.33171 1.22644 1.23143 0.95242 0.99692 1.01342 1.22630 0.93751 1.04891 0.98669 1.70256 1.12438 1.15320 1.27510 1.25592 0.96779 0.99622 0.88445 0.91554 0.91972 0.91941 0.95984 0.96380 0.93103 0.83412 0.93977 0.93319 0.88778 0.86091 0.79793 0.80084 0.75092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.40 9.16 71.98 0.66 -3.74 16 2 C 0.10 3.63 2.53 44.92 0.11 3.74 16 3 H 0.05 1.93 7.80 -2.39 -0.02 1.92 16 4 C 0.00 -0.16 3.72 29.85 0.11 -0.05 16 5 C -0.49 -27.51 9.39 25.60 0.24 -27.26 16 6 H 0.03 2.03 7.99 -2.90 -0.02 2.01 16 7 C -0.01 -0.31 5.47 84.65 0.46 0.16 16 8 N -0.96 -60.63 13.96 21.45 0.30 -60.33 16 9 Si 0.95 43.92 27.47 68.60 1.88 45.81 16 10 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 11 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 12 H -0.24 -10.36 6.54 99.48 0.65 -9.71 16 13 N -0.68 -21.19 5.96 -491.55 -2.93 -24.12 16 14 C 0.06 1.54 5.81 86.30 0.50 2.05 16 15 C 0.11 2.37 6.41 86.38 0.55 2.92 16 16 N -0.45 -10.30 2.75 -529.07 -1.46 -11.76 16 17 C -0.06 -1.46 11.58 83.08 0.96 -0.50 16 18 C -0.05 -1.33 11.87 83.52 0.99 -0.34 16 19 N -0.54 -14.81 11.25 -200.31 -2.25 -17.06 16 20 C 0.18 3.97 12.56 180.27 2.26 6.23 16 21 H 0.07 1.55 8.13 -2.39 -0.02 1.53 16 22 H 0.06 1.36 7.45 -2.39 -0.02 1.34 16 23 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 24 H 0.02 0.95 7.20 -2.39 -0.02 0.93 16 25 H 0.02 0.78 7.57 -2.39 -0.02 0.76 16 26 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 27 H 0.35 8.94 8.47 -89.69 -0.76 8.18 16 28 H 0.04 0.97 7.44 -2.39 -0.02 0.95 16 29 H 0.05 1.53 8.06 -2.38 -0.02 1.51 16 30 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 31 H 0.12 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.18 3.85 8.06 -2.91 -0.02 3.83 16 33 H 0.18 3.72 8.06 -2.91 -0.02 3.69 16 34 H 0.23 3.27 8.06 -2.91 -0.02 3.25 16 Total: -1.00 -70.85 287.67 2.66 -68.19 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: 0.25 Total: 16.07 kcal Atomic # 6 Polarization: -23.66 SS G_CDS: 6.86 Total: -16.80 kcal Atomic # 7 Polarization: -106.93 SS G_CDS: -6.34 Total: -113.27 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 1.88 Total: 45.81 kcal Total: -70.85 2.66 -68.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695861356.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.645 kcal (2) G-P(sol) polarization free energy of solvation -70.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds