Wall clock time and date at job start Mon Mar 30 2020 02:34:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00339 * 2 1 3 5 5 N 1.33239 * 125.52045 * 299.69108 * 4 2 1 6 6 C 1.30844 * 109.82380 * 179.85596 * 5 4 2 7 7 N 1.34428 * 108.07644 * 0.40085 * 6 5 4 8 8 C 1.46500 * 126.81878 * 179.78870 * 7 6 5 9 9 H 1.09001 * 109.46738 * 154.96308 * 8 7 6 10 10 C 1.53000 * 109.47297 * 274.95797 * 8 7 6 11 11 C 1.52995 * 109.47188 * 34.96480 * 8 7 6 12 12 C 1.50700 * 109.47337 * 174.99775 * 11 8 7 13 13 H 1.08006 * 119.99505 * 359.97438 * 12 11 8 14 14 C 1.37876 * 120.00492 * 179.97438 * 12 11 8 15 15 N 1.31512 * 120.00134 * 180.02562 * 14 12 11 16 16 Si 1.86797 * 119.99775 * 359.97438 * 14 12 11 17 17 H 1.48503 * 109.47000 * 90.00199 * 16 14 12 18 18 H 1.48499 * 109.47403 * 210.00369 * 16 14 12 19 19 H 1.48501 * 109.47172 * 330.00596 * 16 14 12 20 20 N 1.30709 * 125.53091 * 120.00019 * 4 2 1 21 21 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 22 22 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 23 23 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 25 25 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 26 26 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 27 27 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 28 28 H 1.07998 * 125.95270 * 180.12795 * 6 5 4 29 29 H 1.09003 * 109.47231 * 300.00490 * 10 8 7 30 30 H 1.09001 * 109.46810 * 60.00555 * 10 8 7 31 31 H 1.08998 * 109.47180 * 180.02562 * 10 8 7 32 32 H 1.09003 * 109.47068 * 294.99960 * 11 8 7 33 33 H 1.09000 * 109.47752 * 54.99670 * 11 8 7 34 34 H 0.96996 * 119.99666 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2305 5 7 1.7840 -0.3492 2.4886 6 6 2.3667 -1.1819 3.3127 7 7 3.0181 -2.1038 2.5828 8 6 3.8110 -3.2260 3.0909 9 1 3.8388 -4.0190 2.3435 10 6 5.2358 -2.7521 3.3848 11 6 3.1753 -3.7589 4.3764 12 6 3.9182 -4.9882 4.8322 13 1 4.7595 -5.3532 4.2616 14 6 3.5241 -5.6471 5.9774 15 7 4.1729 -6.7196 6.3754 16 14 2.0695 -5.0154 6.9646 17 1 0.8217 -5.6495 6.4684 18 1 2.2601 -5.3529 8.3981 19 1 1.9703 -3.5416 6.8120 20 7 2.7870 -1.7777 1.2365 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8934 -0.5138 -0.8899 25 1 1.6768 1.9562 0.8900 26 1 3.1300 1.4424 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 2.3338 -1.1339 4.3911 29 1 5.6886 -2.3725 2.4689 30 1 5.2079 -1.9591 4.1322 31 1 5.8258 -3.5872 3.7625 32 1 3.2277 -2.9944 5.1517 33 1 2.1324 -4.0138 4.1876 34 1 3.8953 -7.1833 7.1808 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695871734.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:59 Heat of formation + Delta-G solvation = 63.094489 kcal Electronic energy + Delta-G solvation = -15164.258548 eV Core-core repulsion = 12712.341032 eV Total energy + Delta-G solvation = -2451.917516 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.72589 -36.40872 -34.84982 -32.58241 -30.98771 -29.68326 -27.79116 -27.13079 -24.14688 -22.78274 -22.33111 -19.99618 -19.00335 -17.31332 -16.06127 -15.42079 -15.07476 -14.49748 -14.15337 -13.82594 -13.72800 -13.23701 -12.76682 -12.33091 -12.13270 -11.95079 -11.72184 -11.50568 -11.27353 -11.20996 -11.04964 -10.93132 -10.52152 -10.25429 -10.01176 -9.62577 -9.42367 -9.32593 -8.98851 -8.73967 -6.24222 -4.26287 2.08011 2.81019 3.18442 3.25808 3.26421 3.27567 4.26998 4.36035 4.77176 5.04802 5.08641 5.18391 5.25715 5.43481 5.58901 5.64010 5.65328 5.84011 5.86737 5.87091 5.94034 6.20587 6.25613 6.30107 6.40532 6.57882 6.64522 6.82691 6.85340 6.99198 7.26231 7.53542 8.26149 8.52399 8.76146 9.34872 10.87870 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.045316 B = 0.006379 C = 0.005945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.741282 B = 4388.571432 C = 4709.035909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.004 3.996 3 C -0.138 4.138 4 C 0.211 3.789 5 N -0.552 5.552 6 C 0.253 3.747 7 N -0.358 5.358 8 C 0.159 3.841 9 H 0.099 0.901 10 C -0.148 4.148 11 C -0.017 4.017 12 C -0.525 4.525 13 H 0.080 0.920 14 C 0.075 3.925 15 N -0.893 5.893 16 Si 0.877 3.123 17 H -0.275 1.275 18 H -0.284 1.284 19 H -0.265 1.265 20 N -0.326 5.326 21 H 0.060 0.940 22 H 0.065 0.935 23 H 0.053 0.947 24 H 0.086 0.914 25 H 0.065 0.935 26 H 0.052 0.948 27 H 0.060 0.940 28 H 0.212 0.788 29 H 0.045 0.955 30 H 0.054 0.946 31 H 0.093 0.907 32 H 0.027 0.973 33 H 0.022 0.978 34 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.085 12.515 -8.275 15.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.017 4.017 3 C -0.196 4.196 4 C -0.072 4.072 5 N -0.281 5.281 6 C -0.044 4.044 7 N -0.147 5.147 8 C 0.059 3.941 9 H 0.117 0.883 10 C -0.206 4.206 11 C -0.055 4.055 12 C -0.563 4.563 13 H 0.098 0.902 14 C -0.128 4.128 15 N -0.530 5.530 16 Si 0.704 3.296 17 H -0.201 1.201 18 H -0.210 1.210 19 H -0.190 1.190 20 N -0.154 5.154 21 H 0.079 0.921 22 H 0.084 0.916 23 H 0.072 0.928 24 H 0.105 0.895 25 H 0.084 0.916 26 H 0.071 0.929 27 H 0.079 0.921 28 H 0.229 0.771 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.111 0.889 32 H 0.045 0.955 33 H 0.040 0.960 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.932 12.190 -8.632 15.446 hybrid contribution -0.620 -0.085 1.055 1.226 sum -4.552 12.105 -7.577 14.989 Atomic orbital electron populations 1.21758 0.93542 1.02113 1.02310 1.19372 0.96049 0.95120 0.91193 1.21751 1.00976 0.94596 1.02322 1.24056 0.96250 0.92855 0.94032 1.70303 1.27923 1.29664 1.00164 1.25855 0.91896 0.86517 1.00093 1.51048 1.37283 1.23135 1.03246 1.21714 0.90112 0.84064 0.98239 0.88253 1.22091 0.95100 1.02742 1.00652 1.19975 0.96834 0.97828 0.90878 1.20797 1.16417 1.08846 1.10228 0.90220 1.24931 0.96431 0.94438 0.97004 1.69876 1.40409 1.18435 1.24317 0.86824 0.83191 0.79919 0.79642 1.20112 1.21014 1.18985 1.77914 1.22313 1.17989 0.97218 0.92064 0.91583 0.92771 0.89536 0.91589 0.92864 0.92069 0.77146 0.93557 0.92712 0.88877 0.95528 0.96006 0.92320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.18 37.16 0.34 -1.24 16 2 C 0.00 0.05 3.39 -91.77 -0.31 -0.26 16 3 C -0.14 -1.53 9.17 37.15 0.34 -1.19 16 4 C 0.21 3.59 6.65 -156.86 -1.04 2.55 16 5 N -0.55 -9.72 11.19 -11.97 -0.13 -9.86 16 6 C 0.25 4.43 11.79 -90.64 -1.07 3.36 16 7 N -0.36 -6.74 3.55 -56.11 -0.20 -6.94 16 8 C 0.16 3.08 3.39 -67.93 -0.23 2.85 16 9 H 0.10 2.00 8.14 -51.93 -0.42 1.58 16 10 C -0.15 -2.57 9.33 37.16 0.35 -2.23 16 11 C -0.02 -0.36 3.07 -27.89 -0.09 -0.45 16 12 C -0.52 -13.59 8.96 -34.44 -0.31 -13.90 16 13 H 0.08 2.20 7.30 -52.48 -0.38 1.81 16 14 C 0.08 2.04 5.47 -17.82 -0.10 1.94 16 15 N -0.89 -25.91 13.96 55.43 0.77 -25.13 16 16 Si 0.88 20.36 27.47 -169.99 -4.67 15.69 16 17 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.27 -5.79 6.54 56.52 0.37 -5.42 16 20 N -0.33 -6.21 12.70 32.42 0.41 -5.80 16 21 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 22 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 23 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 24 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 25 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.21 3.12 7.46 -52.49 -0.39 2.72 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.09 1.70 6.95 -51.93 -0.36 1.34 16 32 H 0.03 0.56 6.54 -51.93 -0.34 0.22 16 33 H 0.02 0.49 7.57 -51.93 -0.39 0.10 16 34 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 285.56 15.07 4.30 4.30 Total: -1.00 -29.52 285.56 -6.89 -36.41 By element: Atomic # 1 Polarization: 5.16 SS G_CDS: -5.26 Total: -0.10 kcal Atomic # 6 Polarization: -6.45 SS G_CDS: -2.12 Total: -8.57 kcal Atomic # 7 Polarization: -48.58 SS G_CDS: 0.85 Total: -47.73 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -4.67 Total: 15.69 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -29.52 -6.89 -36.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695871734.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.504 kcal (2) G-P(sol) polarization free energy of solvation -29.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds