Wall clock time and date at job start Mon Mar 30 2020 02:34:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00339 * 2 1 3 5 5 N 1.33239 * 125.52045 * 299.69108 * 4 2 1 6 6 C 1.30844 * 109.82380 * 179.85596 * 5 4 2 7 7 N 1.34428 * 108.07644 * 0.40085 * 6 5 4 8 8 C 1.46500 * 126.81878 * 179.78870 * 7 6 5 9 9 H 1.09001 * 109.46738 * 154.96308 * 8 7 6 10 10 C 1.53000 * 109.47297 * 274.95797 * 8 7 6 11 11 C 1.52995 * 109.47188 * 34.96480 * 8 7 6 12 12 C 1.50700 * 109.47337 * 174.99775 * 11 8 7 13 13 H 1.08006 * 119.99505 * 359.97438 * 12 11 8 14 14 C 1.37876 * 120.00492 * 179.97438 * 12 11 8 15 15 N 1.31512 * 120.00134 * 180.02562 * 14 12 11 16 16 Si 1.86797 * 119.99775 * 359.97438 * 14 12 11 17 17 H 1.48503 * 109.47000 * 90.00199 * 16 14 12 18 18 H 1.48499 * 109.47403 * 210.00369 * 16 14 12 19 19 H 1.48501 * 109.47172 * 330.00596 * 16 14 12 20 20 N 1.30709 * 125.53091 * 120.00019 * 4 2 1 21 21 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 22 22 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 23 23 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 25 25 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 26 26 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 27 27 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 28 28 H 1.07998 * 125.95270 * 180.12795 * 6 5 4 29 29 H 1.09003 * 109.47231 * 300.00490 * 10 8 7 30 30 H 1.09001 * 109.46810 * 60.00555 * 10 8 7 31 31 H 1.08998 * 109.47180 * 180.02562 * 10 8 7 32 32 H 1.09003 * 109.47068 * 294.99960 * 11 8 7 33 33 H 1.09000 * 109.47752 * 54.99670 * 11 8 7 34 34 H 0.96996 * 119.99666 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2305 5 7 1.7840 -0.3492 2.4886 6 6 2.3667 -1.1819 3.3127 7 7 3.0181 -2.1038 2.5828 8 6 3.8110 -3.2260 3.0909 9 1 3.8388 -4.0190 2.3435 10 6 5.2358 -2.7521 3.3848 11 6 3.1753 -3.7589 4.3764 12 6 3.9182 -4.9882 4.8322 13 1 4.7595 -5.3532 4.2616 14 6 3.5241 -5.6471 5.9774 15 7 4.1729 -6.7196 6.3754 16 14 2.0695 -5.0154 6.9646 17 1 0.8217 -5.6495 6.4684 18 1 2.2601 -5.3529 8.3981 19 1 1.9703 -3.5416 6.8120 20 7 2.7870 -1.7777 1.2365 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8934 -0.5138 -0.8899 25 1 1.6768 1.9562 0.8900 26 1 3.1300 1.4424 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 2.3338 -1.1339 4.3911 29 1 5.6886 -2.3725 2.4689 30 1 5.2079 -1.9591 4.1322 31 1 5.8258 -3.5872 3.7625 32 1 3.2277 -2.9944 5.1517 33 1 2.1324 -4.0138 4.1876 34 1 3.8953 -7.1833 7.1808 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695871734.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:59 Heat of formation + Delta-G solvation = 46.625123 kcal Electronic energy + Delta-G solvation = -15164.972713 eV Core-core repulsion = 12712.341032 eV Total energy + Delta-G solvation = -2452.631681 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.08709 -37.84015 -36.07802 -34.49824 -32.42322 -31.15690 -29.48022 -27.99879 -25.73712 -24.06144 -23.86600 -21.44954 -20.30543 -19.20074 -17.53843 -16.78124 -16.51306 -16.22988 -15.46493 -15.19799 -14.90937 -14.77650 -14.17940 -13.85130 -13.42442 -13.15588 -13.03071 -12.94982 -12.77083 -12.48436 -12.25197 -12.07232 -11.99500 -11.88422 -11.72211 -11.47329 -10.90869 -10.81829 -10.72930 -10.38039 -8.31649 -6.37965 0.71516 1.36931 1.38790 1.39245 1.47957 1.94816 2.33334 3.03338 3.20020 3.51989 3.83880 3.99935 4.07044 4.24593 4.27829 4.35827 4.46429 4.73708 4.82660 4.85739 4.89276 4.98927 5.01798 5.07057 5.12287 5.24614 5.37667 5.41297 5.43743 5.46312 5.57502 5.95589 6.20085 6.68459 7.16517 7.26522 8.83603 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.045316 B = 0.006379 C = 0.005945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.741282 B = 4388.571432 C = 4709.035909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.002 4.002 3 C -0.131 4.131 4 C 0.212 3.788 5 N -0.560 5.560 6 C 0.252 3.748 7 N -0.370 5.370 8 C 0.169 3.831 9 H 0.083 0.917 10 C -0.138 4.138 11 C -0.009 4.009 12 C -0.524 4.524 13 H 0.048 0.952 14 C 0.017 3.983 15 N -0.942 5.942 16 Si 0.938 3.062 17 H -0.276 1.276 18 H -0.284 1.284 19 H -0.236 1.236 20 N -0.358 5.358 21 H 0.092 0.908 22 H 0.057 0.943 23 H 0.041 0.959 24 H 0.093 0.907 25 H 0.057 0.943 26 H 0.044 0.956 27 H 0.091 0.909 28 H 0.238 0.762 29 H 0.055 0.945 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.045 0.955 33 H 0.019 0.981 34 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.470 14.811 -8.590 17.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.023 4.023 3 C -0.189 4.189 4 C -0.070 4.070 5 N -0.288 5.288 6 C -0.044 4.044 7 N -0.159 5.159 8 C 0.068 3.932 9 H 0.101 0.899 10 C -0.196 4.196 11 C -0.047 4.047 12 C -0.563 4.563 13 H 0.066 0.934 14 C -0.182 4.182 15 N -0.582 5.582 16 Si 0.762 3.238 17 H -0.201 1.201 18 H -0.210 1.210 19 H -0.159 1.159 20 N -0.186 5.186 21 H 0.111 0.889 22 H 0.076 0.924 23 H 0.060 0.940 24 H 0.112 0.888 25 H 0.076 0.924 26 H 0.063 0.937 27 H 0.110 0.890 28 H 0.253 0.747 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.063 0.937 33 H 0.037 0.963 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.317 14.513 -8.968 17.870 hybrid contribution -0.165 -0.792 1.061 1.335 sum -5.482 13.721 -7.907 16.758 Atomic orbital electron populations 1.21725 0.92212 1.01673 1.03462 1.19668 0.97088 0.95890 0.89625 1.21710 1.00409 0.93340 1.03438 1.24892 0.94866 0.92095 0.95150 1.70370 1.28163 1.29823 1.00482 1.26460 0.90949 0.85818 1.01208 1.50910 1.38057 1.23366 1.03590 1.21390 0.90914 0.84261 0.96680 0.89905 1.21980 0.93773 1.02452 1.01436 1.19824 0.95990 0.96472 0.92434 1.21052 1.15567 1.10069 1.09574 0.93364 1.25807 0.99362 0.94613 0.98402 1.70019 1.42668 1.20295 1.25245 0.85839 0.79225 0.80984 0.77754 1.20134 1.21016 1.15926 1.77901 1.23887 1.19359 0.97473 0.88942 0.92389 0.93981 0.88849 0.92381 0.93686 0.89023 0.74651 0.92569 0.91436 0.90312 0.93675 0.96317 0.92303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.68 9.18 71.98 0.66 -2.02 16 2 C 0.00 -0.04 3.39 -11.54 -0.04 -0.08 16 3 C -0.13 -2.54 9.17 71.98 0.66 -1.88 16 4 C 0.21 6.91 6.65 138.63 0.92 7.83 16 5 N -0.56 -18.59 11.19 -191.79 -2.15 -20.74 16 6 C 0.25 8.23 11.79 180.36 2.13 10.36 16 7 N -0.37 -13.45 3.55 -331.44 -1.18 -14.62 16 8 C 0.17 6.41 3.39 44.99 0.15 6.57 16 9 H 0.08 3.39 8.14 -2.39 -0.02 3.37 16 10 C -0.14 -4.71 9.33 71.98 0.67 -4.04 16 11 C -0.01 -0.36 3.07 29.85 0.09 -0.27 16 12 C -0.52 -27.37 8.96 25.60 0.23 -27.14 16 13 H 0.05 2.76 7.30 -2.91 -0.02 2.73 16 14 C 0.02 0.90 5.47 84.65 0.46 1.36 16 15 N -0.94 -55.83 13.96 21.45 0.30 -55.53 16 16 Si 0.94 41.02 27.47 68.60 1.88 42.91 16 17 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 18 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 19 H -0.24 -9.14 6.54 99.48 0.65 -8.49 16 20 N -0.36 -13.29 12.70 -51.33 -0.65 -13.94 16 21 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 22 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 23 H 0.04 0.94 8.14 -2.38 -0.02 0.92 16 24 H 0.09 2.07 8.14 -2.39 -0.02 2.06 16 25 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.24 6.17 7.46 -2.91 -0.02 6.15 16 29 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.07 2.10 8.14 -2.39 -0.02 2.09 16 31 H 0.08 2.90 6.95 -2.39 -0.02 2.89 16 32 H 0.05 1.75 6.54 -2.39 -0.02 1.74 16 33 H 0.02 0.80 7.57 -2.39 -0.02 0.78 16 34 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 Total: -1.00 -63.39 285.56 5.15 -58.24 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: 1.01 Total: 13.00 kcal Atomic # 6 Polarization: -15.25 SS G_CDS: 5.94 Total: -9.31 kcal Atomic # 7 Polarization: -101.16 SS G_CDS: -3.67 Total: -104.83 kcal Atomic # 14 Polarization: 41.02 SS G_CDS: 1.88 Total: 42.91 kcal Total: -63.39 5.15 -58.24 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695871734.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.863 kcal (2) G-P(sol) polarization free energy of solvation -63.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds