Wall clock time and date at job start Mon Mar 30 2020 02:34:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.09002 * 109.47243 * 2 1
4 4 C 1.53001 * 109.47131 * 120.00649 * 2 1 3
5 5 C 1.50699 * 109.46888 * 294.99593 * 4 2 1
6 6 H 1.07995 * 119.99946 * 359.97438 * 5 4 2
7 7 C 1.37872 * 120.00112 * 180.02562 * 5 4 2
8 8 N 1.31517 * 119.99907 * 359.97438 * 7 5 4
9 9 Si 1.86800 * 120.00446 * 180.02562 * 7 5 4
10 10 H 1.48506 * 109.46687 * 359.97438 * 9 7 5
11 11 H 1.48495 * 109.47460 * 119.99659 * 9 7 5
12 12 H 1.48501 * 109.47218 * 239.99878 * 9 7 5
13 13 N 1.46503 * 109.46719 * 240.00389 * 2 1 3
14 14 C 1.36885 * 126.39872 * 300.02259 * 13 2 1
15 15 C 1.34668 * 106.81739 * 179.74288 * 14 13 2
16 16 N 1.34129 * 108.02266 * 359.97438 * 15 14 13
17 17 C 1.30503 * 109.25413 * 359.97438 * 16 15 14
18 18 C 1.50700 * 125.64576 * 179.97438 * 17 16 15
19 19 C 1.52995 * 109.47340 * 270.00241 * 18 17 16
20 20 N 1.46898 * 109.47281 * 180.02562 * 19 18 17
21 21 H 1.08993 * 109.47772 * 179.97438 * 1 2 3
22 22 H 1.09005 * 109.47181 * 299.99730 * 1 2 3
23 23 H 1.08997 * 109.47239 * 59.99053 * 1 2 3
24 24 H 1.08994 * 109.47264 * 54.99400 * 4 2 1
25 25 H 1.09006 * 109.46892 * 175.00128 * 4 2 1
26 26 H 0.97005 * 120.00126 * 179.97438 * 8 7 5
27 27 H 1.07999 * 126.58807 * 359.70697 * 14 13 2
28 28 H 1.08001 * 125.98408 * 180.02562 * 15 14 13
29 29 H 1.09001 * 109.47157 * 30.00953 * 18 17 16
30 30 H 1.09001 * 109.46740 * 150.00187 * 18 17 16
31 31 H 1.08996 * 109.47140 * 300.00298 * 19 18 17
32 32 H 1.09001 * 109.47248 * 60.00257 * 19 18 17
33 33 H 1.00898 * 111.00318 * 56.04594 * 20 19 18
34 34 H 1.00899 * 111.00424 * 180.02562 * 20 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0400 -0.7214 1.2492
5 6 1.6414 0.0569 2.4765
6 1 1.0808 0.9744 2.3757
7 6 1.9933 -0.4019 3.7282
8 7 2.6764 -1.5191 3.8510
9 14 1.4986 0.5623 5.2497
10 1 0.7413 1.7735 4.8435
11 1 0.6452 -0.2874 6.1185
12 1 2.7164 0.9678 5.9964
13 7 2.0182 -0.6906 -1.1963
14 6 1.7692 -1.9915 -1.5417
15 6 2.4002 -2.2118 -2.7108
16 7 3.0173 -1.0763 -3.0698
17 6 2.7921 -0.1604 -2.1677
18 6 3.3116 1.2537 -2.2032
19 6 4.6681 1.3166 -1.4985
20 7 5.1743 2.6952 -1.5326
21 1 -0.3634 -1.0276 -0.0005
22 1 -0.3634 0.5138 0.8900
23 1 -0.3633 0.5140 -0.8899
24 1 1.6053 -1.7199 1.2950
25 1 3.1264 -0.7996 1.2055
26 1 2.9243 -1.8417 4.7316
27 1 1.1803 -2.7043 -0.9836
28 1 2.4073 -3.1400 -3.2630
29 1 3.4251 1.5732 -3.2392
30 1 2.6073 1.9124 -1.6951
31 1 4.5546 0.9971 -0.4626
32 1 5.3725 0.6580 -2.0067
33 1 4.5091 3.3348 -1.1245
34 1 6.0702 2.7631 -1.0735
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000695885966.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:34:43
Heat of formation + Delta-G solvation = 38.181025 kcal
Electronic energy + Delta-G solvation = -15439.770054 eV
Core-core repulsion = 12986.772209 eV
Total energy + Delta-G solvation = -2452.997845 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 223.138 amu
Computer time = 0.23 seconds
Orbital eigenvalues (eV)
-41.62543 -35.66064 -35.35945 -32.73674 -30.78494 -30.09046 -27.24220 -26.94315
-24.02444 -22.36411 -21.77312 -20.13717 -18.75347 -16.98460 -16.11278 -15.52485
-15.08192 -14.79930 -14.47633 -14.12659 -13.45448 -13.16098 -13.11696 -12.53567
-12.26125 -12.09953 -11.74659 -11.60168 -11.13964 -11.12538 -10.99084 -10.69833
-10.32273 -10.04561 -9.57288 -9.31654 -8.83871 -8.65581 -8.58300 -7.85679
-6.22395 -4.27878 2.61003 3.16948 3.24981 3.27297 3.42448 3.59220
4.27616 4.52567 5.09025 5.13399 5.16859 5.31474 5.33733 5.51410
5.67759 5.74645 5.86503 5.93557 5.99407 6.19147 6.27361 6.32821
6.48253 6.59913 6.93005 7.13597 7.25851 7.33091 7.42470 7.46168
7.67261 7.83232 8.09239 8.60508 8.77046 9.37673 10.88572
Molecular weight = 223.14amu
Principal moments of inertia in cm(-1)
A = 0.025046 B = 0.008294 C = 0.007054
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1117.674613 B = 3375.296244 C = 3968.694845
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.146 4.146
2 C 0.125 3.875
3 H 0.088 0.912
4 C 0.023 3.977
5 C -0.526 4.526
6 H 0.061 0.939
7 C 0.062 3.938
8 N -0.888 5.888
9 Si 0.895 3.105
10 H -0.271 1.271
11 H -0.282 1.282
12 H -0.283 1.283
13 N -0.433 5.433
14 C -0.041 4.041
15 C -0.048 4.048
16 N -0.498 5.498
17 C 0.193 3.807
18 C -0.026 4.026
19 C 0.064 3.936
20 N -0.851 5.851
21 H 0.056 0.944
22 H 0.084 0.916
23 H 0.041 0.959
24 H 0.025 0.975
25 H 0.021 0.979
26 H 0.263 0.737
27 H 0.167 0.833
28 H 0.162 0.838
29 H 0.095 0.905
30 H 0.073 0.927
31 H 0.035 0.965
32 H 0.077 0.923
33 H 0.339 0.661
34 H 0.343 0.657
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.891 4.155 -7.326 8.470
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C 0.023 3.977
3 H 0.106 0.894
4 C -0.014 4.014
5 C -0.564 4.564
6 H 0.079 0.921
7 C -0.141 4.141
8 N -0.526 5.526
9 Si 0.722 3.278
10 H -0.196 1.196
11 H -0.208 1.208
12 H -0.209 1.209
13 N -0.113 5.113
14 C -0.176 4.176
15 C -0.197 4.197
16 N -0.218 5.218
17 C -0.070 4.070
18 C -0.066 4.066
19 C -0.067 4.067
20 N -0.380 5.380
21 H 0.075 0.925
22 H 0.103 0.897
23 H 0.060 0.940
24 H 0.043 0.957
25 H 0.040 0.960
26 H 0.073 0.927
27 H 0.184 0.816
28 H 0.180 0.820
29 H 0.114 0.886
30 H 0.092 0.908
31 H 0.054 0.946
32 H 0.095 0.905
33 H 0.151 0.849
34 H 0.155 0.845
Dipole moment (debyes) X Y Z Total
from point charges -0.412 4.136 -8.555 9.511
hybrid contribution -0.799 0.002 2.818 2.929
sum -1.211 4.138 -5.737 7.176
Atomic orbital electron populations
1.22028 0.94112 1.02453 1.01803 1.21951 0.95036 0.96922 0.83760
0.89405 1.19408 0.96884 0.96036 0.89100 1.21041 1.36230 1.08749
0.90407 0.92128 1.25004 0.94825 0.95017 0.99271 1.69977 1.37909
1.20872 1.23847 0.86487 0.78415 0.80023 0.82826 1.19589 1.20807
1.20873 1.45892 1.36663 1.10138 1.18587 1.22605 1.07788 0.87309
0.99938 1.22117 1.02863 0.97776 0.96914 1.70122 1.23957 1.00204
1.27485 1.22909 0.98917 0.97298 0.87858 1.19822 0.95798 0.87786
1.03175 1.21745 0.95816 0.90125 0.99033 1.58746 1.07972 1.06782
1.64479 0.92473 0.89729 0.93988 0.95682 0.96049 0.92715 0.81557
0.82019 0.88641 0.90837 0.94631 0.90473 0.84892 0.84500
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.52 9.06 37.16 0.34 -2.18 16
2 C 0.12 2.40 2.94 -67.93 -0.20 2.20 16
3 H 0.09 1.63 6.67 -51.93 -0.35 1.28 16
4 C 0.02 0.56 4.46 -27.88 -0.12 0.43 16
5 C -0.53 -13.49 8.41 -34.44 -0.29 -13.78 16
6 H 0.06 1.48 7.06 -52.49 -0.37 1.11 16
7 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16
8 N -0.89 -25.33 13.29 55.43 0.74 -24.59 16
9 Si 0.90 20.33 29.54 -169.99 -5.02 15.31 16
10 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16
11 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16
12 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16
13 N -0.43 -8.10 2.61 -106.83 -0.28 -8.38 16
14 C -0.04 -0.73 10.70 -16.56 -0.18 -0.91 16
15 C -0.05 -0.85 11.87 -17.81 -0.21 -1.06 16
16 N -0.50 -9.56 11.25 -10.81 -0.12 -9.68 16
17 C 0.19 3.52 7.16 -155.41 -1.11 2.41 16
18 C -0.03 -0.40 5.62 -27.89 -0.16 -0.55 16
19 C 0.06 0.95 6.77 -3.83 -0.03 0.93 16
20 N -0.85 -10.39 9.62 -10.37 -0.10 -10.49 16
21 H 0.06 0.98 7.95 -51.93 -0.41 0.56 16
22 H 0.08 1.49 6.95 -51.93 -0.36 1.13 16
23 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16
24 H 0.02 0.64 8.09 -51.93 -0.42 0.22 16
25 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16
26 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16
27 H 0.17 2.71 8.06 -52.49 -0.42 2.29 16
28 H 0.16 2.35 8.06 -52.49 -0.42 1.93 16
29 H 0.10 1.39 8.14 -51.93 -0.42 0.96 16
30 H 0.07 1.02 7.08 -51.93 -0.37 0.66 16
31 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16
32 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16
33 H 0.34 3.72 8.99 -39.29 -0.35 3.36 16
34 H 0.34 3.68 9.08 -39.29 -0.36 3.33 16
LS Contribution 287.05 15.07 4.33 4.33
Total: -1.00 -29.56 287.05 -7.60 -37.16
By element:
Atomic # 1 Polarization: 12.39 SS G_CDS: -5.08 Total: 7.31 kcal
Atomic # 6 Polarization: -8.92 SS G_CDS: -2.06 Total: -10.97 kcal
Atomic # 7 Polarization: -53.37 SS G_CDS: 0.24 Total: -53.14 kcal
Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal
Total LS contribution 4.33 Total: 4.33 kcal
Total: -29.56 -7.60 -37.16 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000695885966.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 75.343 kcal
(2) G-P(sol) polarization free energy of solvation -29.563 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.779 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.598 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.162 kcal
(6) G-S(sol) free energy of system = (1) + (5) 38.181 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.23 seconds