Wall clock time and date at job start Mon Mar 30 2020 02:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47243 * 2 1 4 4 C 1.53001 * 109.47131 * 120.00649 * 2 1 3 5 5 C 1.50699 * 109.46888 * 294.99593 * 4 2 1 6 6 H 1.07995 * 119.99946 * 359.97438 * 5 4 2 7 7 C 1.37872 * 120.00112 * 180.02562 * 5 4 2 8 8 N 1.31517 * 119.99907 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00446 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.46687 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47460 * 119.99659 * 9 7 5 12 12 H 1.48501 * 109.47218 * 239.99878 * 9 7 5 13 13 N 1.46503 * 109.46719 * 240.00389 * 2 1 3 14 14 C 1.36885 * 126.39872 * 300.02259 * 13 2 1 15 15 C 1.34668 * 106.81739 * 179.74288 * 14 13 2 16 16 N 1.34129 * 108.02266 * 359.97438 * 15 14 13 17 17 C 1.30503 * 109.25413 * 359.97438 * 16 15 14 18 18 C 1.50700 * 125.64576 * 179.97438 * 17 16 15 19 19 C 1.52995 * 109.47340 * 270.00241 * 18 17 16 20 20 N 1.46898 * 109.47281 * 180.02562 * 19 18 17 21 21 H 1.08993 * 109.47772 * 179.97438 * 1 2 3 22 22 H 1.09005 * 109.47181 * 299.99730 * 1 2 3 23 23 H 1.08997 * 109.47239 * 59.99053 * 1 2 3 24 24 H 1.08994 * 109.47264 * 54.99400 * 4 2 1 25 25 H 1.09006 * 109.46892 * 175.00128 * 4 2 1 26 26 H 0.97005 * 120.00126 * 179.97438 * 8 7 5 27 27 H 1.07999 * 126.58807 * 359.70697 * 14 13 2 28 28 H 1.08001 * 125.98408 * 180.02562 * 15 14 13 29 29 H 1.09001 * 109.47157 * 30.00953 * 18 17 16 30 30 H 1.09001 * 109.46740 * 150.00187 * 18 17 16 31 31 H 1.08996 * 109.47140 * 300.00298 * 19 18 17 32 32 H 1.09001 * 109.47248 * 60.00257 * 19 18 17 33 33 H 1.00898 * 111.00318 * 56.04594 * 20 19 18 34 34 H 1.00899 * 111.00424 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.6414 0.0569 2.4765 6 1 1.0808 0.9744 2.3757 7 6 1.9933 -0.4019 3.7282 8 7 2.6764 -1.5191 3.8510 9 14 1.4986 0.5623 5.2497 10 1 0.7413 1.7735 4.8435 11 1 0.6452 -0.2874 6.1185 12 1 2.7164 0.9678 5.9964 13 7 2.0182 -0.6906 -1.1963 14 6 1.7692 -1.9915 -1.5417 15 6 2.4002 -2.2118 -2.7108 16 7 3.0173 -1.0763 -3.0698 17 6 2.7921 -0.1604 -2.1677 18 6 3.3116 1.2537 -2.2032 19 6 4.6681 1.3166 -1.4985 20 7 5.1743 2.6952 -1.5326 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5140 -0.8899 24 1 1.6053 -1.7199 1.2950 25 1 3.1264 -0.7996 1.2055 26 1 2.9243 -1.8417 4.7316 27 1 1.1803 -2.7043 -0.9836 28 1 2.4073 -3.1400 -3.2630 29 1 3.4251 1.5732 -3.2392 30 1 2.6073 1.9124 -1.6951 31 1 4.5546 0.9971 -0.4626 32 1 5.3725 0.6580 -2.0067 33 1 4.5091 3.3348 -1.1245 34 1 6.0702 2.7631 -1.0735 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695885966.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:43 Heat of formation + Delta-G solvation = 38.181025 kcal Electronic energy + Delta-G solvation = -15439.770054 eV Core-core repulsion = 12986.772209 eV Total energy + Delta-G solvation = -2452.997845 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.62543 -35.66064 -35.35945 -32.73674 -30.78494 -30.09046 -27.24220 -26.94315 -24.02444 -22.36411 -21.77312 -20.13717 -18.75347 -16.98460 -16.11278 -15.52485 -15.08192 -14.79930 -14.47633 -14.12659 -13.45448 -13.16098 -13.11696 -12.53567 -12.26125 -12.09953 -11.74659 -11.60168 -11.13964 -11.12538 -10.99084 -10.69833 -10.32273 -10.04561 -9.57288 -9.31654 -8.83871 -8.65581 -8.58300 -7.85679 -6.22395 -4.27878 2.61003 3.16948 3.24981 3.27297 3.42448 3.59220 4.27616 4.52567 5.09025 5.13399 5.16859 5.31474 5.33733 5.51410 5.67759 5.74645 5.86503 5.93557 5.99407 6.19147 6.27361 6.32821 6.48253 6.59913 6.93005 7.13597 7.25851 7.33091 7.42470 7.46168 7.67261 7.83232 8.09239 8.60508 8.77046 9.37673 10.88572 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.025046 B = 0.008294 C = 0.007054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.674613 B = 3375.296244 C = 3968.694845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.125 3.875 3 H 0.088 0.912 4 C 0.023 3.977 5 C -0.526 4.526 6 H 0.061 0.939 7 C 0.062 3.938 8 N -0.888 5.888 9 Si 0.895 3.105 10 H -0.271 1.271 11 H -0.282 1.282 12 H -0.283 1.283 13 N -0.433 5.433 14 C -0.041 4.041 15 C -0.048 4.048 16 N -0.498 5.498 17 C 0.193 3.807 18 C -0.026 4.026 19 C 0.064 3.936 20 N -0.851 5.851 21 H 0.056 0.944 22 H 0.084 0.916 23 H 0.041 0.959 24 H 0.025 0.975 25 H 0.021 0.979 26 H 0.263 0.737 27 H 0.167 0.833 28 H 0.162 0.838 29 H 0.095 0.905 30 H 0.073 0.927 31 H 0.035 0.965 32 H 0.077 0.923 33 H 0.339 0.661 34 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.891 4.155 -7.326 8.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.023 3.977 3 H 0.106 0.894 4 C -0.014 4.014 5 C -0.564 4.564 6 H 0.079 0.921 7 C -0.141 4.141 8 N -0.526 5.526 9 Si 0.722 3.278 10 H -0.196 1.196 11 H -0.208 1.208 12 H -0.209 1.209 13 N -0.113 5.113 14 C -0.176 4.176 15 C -0.197 4.197 16 N -0.218 5.218 17 C -0.070 4.070 18 C -0.066 4.066 19 C -0.067 4.067 20 N -0.380 5.380 21 H 0.075 0.925 22 H 0.103 0.897 23 H 0.060 0.940 24 H 0.043 0.957 25 H 0.040 0.960 26 H 0.073 0.927 27 H 0.184 0.816 28 H 0.180 0.820 29 H 0.114 0.886 30 H 0.092 0.908 31 H 0.054 0.946 32 H 0.095 0.905 33 H 0.151 0.849 34 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -0.412 4.136 -8.555 9.511 hybrid contribution -0.799 0.002 2.818 2.929 sum -1.211 4.138 -5.737 7.176 Atomic orbital electron populations 1.22028 0.94112 1.02453 1.01803 1.21951 0.95036 0.96922 0.83760 0.89405 1.19408 0.96884 0.96036 0.89100 1.21041 1.36230 1.08749 0.90407 0.92128 1.25004 0.94825 0.95017 0.99271 1.69977 1.37909 1.20872 1.23847 0.86487 0.78415 0.80023 0.82826 1.19589 1.20807 1.20873 1.45892 1.36663 1.10138 1.18587 1.22605 1.07788 0.87309 0.99938 1.22117 1.02863 0.97776 0.96914 1.70122 1.23957 1.00204 1.27485 1.22909 0.98917 0.97298 0.87858 1.19822 0.95798 0.87786 1.03175 1.21745 0.95816 0.90125 0.99033 1.58746 1.07972 1.06782 1.64479 0.92473 0.89729 0.93988 0.95682 0.96049 0.92715 0.81557 0.82019 0.88641 0.90837 0.94631 0.90473 0.84892 0.84500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 9.06 37.16 0.34 -2.18 16 2 C 0.12 2.40 2.94 -67.93 -0.20 2.20 16 3 H 0.09 1.63 6.67 -51.93 -0.35 1.28 16 4 C 0.02 0.56 4.46 -27.88 -0.12 0.43 16 5 C -0.53 -13.49 8.41 -34.44 -0.29 -13.78 16 6 H 0.06 1.48 7.06 -52.49 -0.37 1.11 16 7 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 8 N -0.89 -25.33 13.29 55.43 0.74 -24.59 16 9 Si 0.90 20.33 29.54 -169.99 -5.02 15.31 16 10 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 11 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 12 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 13 N -0.43 -8.10 2.61 -106.83 -0.28 -8.38 16 14 C -0.04 -0.73 10.70 -16.56 -0.18 -0.91 16 15 C -0.05 -0.85 11.87 -17.81 -0.21 -1.06 16 16 N -0.50 -9.56 11.25 -10.81 -0.12 -9.68 16 17 C 0.19 3.52 7.16 -155.41 -1.11 2.41 16 18 C -0.03 -0.40 5.62 -27.89 -0.16 -0.55 16 19 C 0.06 0.95 6.77 -3.83 -0.03 0.93 16 20 N -0.85 -10.39 9.62 -10.37 -0.10 -10.49 16 21 H 0.06 0.98 7.95 -51.93 -0.41 0.56 16 22 H 0.08 1.49 6.95 -51.93 -0.36 1.13 16 23 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.02 0.64 8.09 -51.93 -0.42 0.22 16 25 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 27 H 0.17 2.71 8.06 -52.49 -0.42 2.29 16 28 H 0.16 2.35 8.06 -52.49 -0.42 1.93 16 29 H 0.10 1.39 8.14 -51.93 -0.42 0.96 16 30 H 0.07 1.02 7.08 -51.93 -0.37 0.66 16 31 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.34 3.72 8.99 -39.29 -0.35 3.36 16 34 H 0.34 3.68 9.08 -39.29 -0.36 3.33 16 LS Contribution 287.05 15.07 4.33 4.33 Total: -1.00 -29.56 287.05 -7.60 -37.16 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -5.08 Total: 7.31 kcal Atomic # 6 Polarization: -8.92 SS G_CDS: -2.06 Total: -10.97 kcal Atomic # 7 Polarization: -53.37 SS G_CDS: 0.24 Total: -53.14 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -29.56 -7.60 -37.16 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695885966.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.343 kcal (2) G-P(sol) polarization free energy of solvation -29.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds