Wall clock time and date at job start Mon Mar 30 2020 02:34:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47243 * 2 1 4 4 C 1.53001 * 109.47131 * 120.00649 * 2 1 3 5 5 C 1.50699 * 109.46888 * 294.99593 * 4 2 1 6 6 H 1.07995 * 119.99946 * 359.97438 * 5 4 2 7 7 C 1.37872 * 120.00112 * 180.02562 * 5 4 2 8 8 N 1.31517 * 119.99907 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00446 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.46687 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47460 * 119.99659 * 9 7 5 12 12 H 1.48501 * 109.47218 * 239.99878 * 9 7 5 13 13 N 1.46503 * 109.46719 * 240.00389 * 2 1 3 14 14 C 1.36885 * 126.39872 * 300.02259 * 13 2 1 15 15 C 1.34668 * 106.81739 * 179.74288 * 14 13 2 16 16 N 1.34129 * 108.02266 * 359.97438 * 15 14 13 17 17 C 1.30503 * 109.25413 * 359.97438 * 16 15 14 18 18 C 1.50700 * 125.64576 * 179.97438 * 17 16 15 19 19 C 1.52995 * 109.47340 * 270.00241 * 18 17 16 20 20 N 1.46898 * 109.47281 * 180.02562 * 19 18 17 21 21 H 1.08993 * 109.47772 * 179.97438 * 1 2 3 22 22 H 1.09005 * 109.47181 * 299.99730 * 1 2 3 23 23 H 1.08997 * 109.47239 * 59.99053 * 1 2 3 24 24 H 1.08994 * 109.47264 * 54.99400 * 4 2 1 25 25 H 1.09006 * 109.46892 * 175.00128 * 4 2 1 26 26 H 0.97005 * 120.00126 * 179.97438 * 8 7 5 27 27 H 1.07999 * 126.58807 * 359.70697 * 14 13 2 28 28 H 1.08001 * 125.98408 * 180.02562 * 15 14 13 29 29 H 1.09001 * 109.47157 * 30.00953 * 18 17 16 30 30 H 1.09001 * 109.46740 * 150.00187 * 18 17 16 31 31 H 1.08996 * 109.47140 * 300.00298 * 19 18 17 32 32 H 1.09001 * 109.47248 * 60.00257 * 19 18 17 33 33 H 1.00898 * 111.00318 * 56.04594 * 20 19 18 34 34 H 1.00899 * 111.00424 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.6414 0.0569 2.4765 6 1 1.0808 0.9744 2.3757 7 6 1.9933 -0.4019 3.7282 8 7 2.6764 -1.5191 3.8510 9 14 1.4986 0.5623 5.2497 10 1 0.7413 1.7735 4.8435 11 1 0.6452 -0.2874 6.1185 12 1 2.7164 0.9678 5.9964 13 7 2.0182 -0.6906 -1.1963 14 6 1.7692 -1.9915 -1.5417 15 6 2.4002 -2.2118 -2.7108 16 7 3.0173 -1.0763 -3.0698 17 6 2.7921 -0.1604 -2.1677 18 6 3.3116 1.2537 -2.2032 19 6 4.6681 1.3166 -1.4985 20 7 5.1743 2.6952 -1.5326 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5140 -0.8899 24 1 1.6053 -1.7199 1.2950 25 1 3.1264 -0.7996 1.2055 26 1 2.9243 -1.8417 4.7316 27 1 1.1803 -2.7043 -0.9836 28 1 2.4073 -3.1400 -3.2630 29 1 3.4251 1.5732 -3.2392 30 1 2.6073 1.9124 -1.6951 31 1 4.5546 0.9971 -0.4626 32 1 5.3725 0.6580 -2.0067 33 1 4.5091 3.3348 -1.1245 34 1 6.0702 2.7631 -1.0735 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695885966.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:42 Heat of formation + Delta-G solvation = 19.117541 kcal Electronic energy + Delta-G solvation = -15440.596709 eV Core-core repulsion = 12986.772209 eV Total energy + Delta-G solvation = -2453.824500 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.04867 -37.29389 -36.52429 -34.66270 -32.01594 -31.69841 -28.99781 -28.24373 -25.82307 -23.64230 -23.32248 -21.62073 -20.19903 -18.75502 -17.73261 -16.74213 -16.72490 -16.17613 -15.95325 -15.51557 -14.95096 -14.65093 -14.50378 -14.22490 -13.80252 -13.51568 -13.23410 -12.91969 -12.85882 -12.80281 -12.38300 -12.31385 -12.03513 -11.74168 -11.41639 -10.89454 -10.65339 -10.37296 -9.72315 -9.25820 -8.26683 -6.38735 1.18337 1.39219 1.40989 1.52652 1.96960 2.19020 2.38525 3.08690 3.33715 3.79505 3.85307 3.97057 4.08972 4.20280 4.23086 4.35898 4.48621 4.62331 4.67472 4.84701 4.92221 5.00595 5.03869 5.19441 5.31153 5.32487 5.61324 5.68521 5.89671 6.04699 6.10881 6.37517 6.55663 6.76150 7.18724 7.31708 8.85528 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.025046 B = 0.008294 C = 0.007054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.674613 B = 3375.296244 C = 3968.694845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.136 3.864 3 H 0.098 0.902 4 C 0.035 3.965 5 C -0.531 4.531 6 H 0.076 0.924 7 C 0.004 3.996 8 N -0.932 5.932 9 Si 0.964 3.036 10 H -0.254 1.254 11 H -0.281 1.281 12 H -0.283 1.283 13 N -0.441 5.441 14 C -0.058 4.058 15 C -0.050 4.050 16 N -0.521 5.521 17 C 0.188 3.812 18 C -0.023 4.023 19 C 0.075 3.925 20 N -0.844 5.844 21 H 0.053 0.947 22 H 0.082 0.918 23 H 0.065 0.935 24 H -0.001 1.001 25 H -0.017 1.017 26 H 0.263 0.737 27 H 0.177 0.823 28 H 0.189 0.811 29 H 0.105 0.895 30 H 0.088 0.912 31 H 0.010 0.990 32 H 0.065 0.935 33 H 0.349 0.651 34 H 0.352 0.648 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.767 5.737 -7.585 9.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.034 3.966 3 H 0.116 0.884 4 C -0.002 4.002 5 C -0.569 4.569 6 H 0.094 0.906 7 C -0.195 4.195 8 N -0.571 5.571 9 Si 0.789 3.211 10 H -0.178 1.178 11 H -0.207 1.207 12 H -0.209 1.209 13 N -0.122 5.122 14 C -0.193 4.193 15 C -0.198 4.198 16 N -0.240 5.240 17 C -0.075 4.075 18 C -0.062 4.062 19 C -0.057 4.057 20 N -0.375 5.375 21 H 0.072 0.928 22 H 0.101 0.899 23 H 0.084 0.916 24 H 0.017 0.983 25 H 0.001 0.999 26 H 0.072 0.928 27 H 0.194 0.806 28 H 0.206 0.794 29 H 0.123 0.877 30 H 0.107 0.893 31 H 0.028 0.972 32 H 0.084 0.916 33 H 0.162 0.838 34 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -1.296 5.731 -8.830 10.606 hybrid contribution -0.476 -0.526 2.842 2.929 sum -1.772 5.205 -5.988 8.129 Atomic orbital electron populations 1.21951 0.92191 1.02637 1.02838 1.21693 0.96385 0.96509 0.82002 0.88412 1.19174 0.94256 0.95281 0.91514 1.21462 1.35498 1.09054 0.90933 0.90638 1.25939 0.94840 0.95910 1.02788 1.70120 1.39609 1.22862 1.24552 0.85401 0.78008 0.79013 0.78677 1.17766 1.20735 1.20925 1.45897 1.37198 1.10544 1.18525 1.22927 1.08460 0.87442 1.00444 1.22608 1.01909 0.98379 0.96874 1.70156 1.24691 1.00961 1.28240 1.23502 0.98228 0.98365 0.87408 1.19914 0.95984 0.86367 1.03957 1.21524 0.95626 0.91340 0.97202 1.58707 1.08684 1.05349 1.64754 0.92781 0.89908 0.91590 0.98276 0.99911 0.92784 0.80605 0.79365 0.87689 0.89322 0.97207 0.91612 0.83772 0.83442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.52 9.06 71.98 0.65 -3.87 16 2 C 0.14 5.12 2.94 44.99 0.13 5.25 16 3 H 0.10 3.48 6.67 -2.39 -0.02 3.46 16 4 C 0.04 1.73 4.46 29.85 0.13 1.86 16 5 C -0.53 -27.10 8.41 25.60 0.22 -26.89 16 6 H 0.08 3.56 7.06 -2.91 -0.02 3.54 16 7 C 0.00 0.20 5.46 84.65 0.46 0.66 16 8 N -0.93 -54.19 13.29 21.45 0.28 -53.91 16 9 Si 0.96 41.26 29.54 68.60 2.03 43.28 16 10 H -0.25 -10.08 7.11 99.48 0.71 -9.37 16 11 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 12 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 13 N -0.44 -16.26 2.61 -491.90 -1.28 -17.54 16 14 C -0.06 -2.07 10.70 83.09 0.89 -1.18 16 15 C -0.05 -1.71 11.87 83.52 0.99 -0.72 16 16 N -0.52 -19.51 11.25 -188.13 -2.12 -21.63 16 17 C 0.19 6.68 7.16 138.13 0.99 7.67 16 18 C -0.02 -0.66 5.62 29.85 0.17 -0.49 16 19 C 0.08 2.18 6.77 86.30 0.58 2.76 16 20 N -0.84 -19.24 9.62 -186.73 -1.80 -21.04 16 21 H 0.05 1.78 7.95 -2.39 -0.02 1.76 16 22 H 0.08 2.73 6.95 -2.38 -0.02 2.72 16 23 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 24 H 0.00 -0.06 8.09 -2.39 -0.02 -0.08 16 25 H -0.02 -0.98 8.14 -2.38 -0.02 -1.00 16 26 H 0.26 14.48 8.31 -92.70 -0.77 13.71 16 27 H 0.18 5.73 8.06 -2.91 -0.02 5.71 16 28 H 0.19 5.18 8.06 -2.91 -0.02 5.15 16 29 H 0.10 2.84 8.14 -2.39 -0.02 2.82 16 30 H 0.09 2.26 7.08 -2.39 -0.02 2.25 16 31 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 32 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.35 6.91 8.99 -89.70 -0.81 6.10 16 34 H 0.35 7.05 9.08 -89.69 -0.81 6.24 16 Total: -1.00 -63.00 287.05 1.81 -61.20 By element: Atomic # 1 Polarization: 25.08 SS G_CDS: -0.52 Total: 24.56 kcal Atomic # 6 Polarization: -20.15 SS G_CDS: 5.22 Total: -14.93 kcal Atomic # 7 Polarization: -109.20 SS G_CDS: -4.91 Total: -114.11 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 2.03 Total: 43.28 kcal Total: -63.00 1.81 -61.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695885966.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.314 kcal (2) G-P(sol) polarization free energy of solvation -63.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds