Wall clock time and date at job start Mon Mar 30 2020 02:34:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.09002 * 109.47243 * 2 1
4 4 C 1.53001 * 109.47131 * 120.00649 * 2 1 3
5 5 C 1.50699 * 109.46888 * 294.99593 * 4 2 1
6 6 H 1.07995 * 119.99946 * 359.97438 * 5 4 2
7 7 C 1.37872 * 120.00112 * 180.02562 * 5 4 2
8 8 N 1.31517 * 119.99907 * 359.97438 * 7 5 4
9 9 Si 1.86800 * 120.00446 * 180.02562 * 7 5 4
10 10 H 1.48506 * 109.46687 * 359.97438 * 9 7 5
11 11 H 1.48495 * 109.47460 * 119.99659 * 9 7 5
12 12 H 1.48501 * 109.47218 * 239.99878 * 9 7 5
13 13 N 1.46503 * 109.46719 * 240.00389 * 2 1 3
14 14 C 1.36885 * 126.39872 * 300.02259 * 13 2 1
15 15 C 1.34668 * 106.81739 * 179.74288 * 14 13 2
16 16 N 1.34129 * 108.02266 * 359.97438 * 15 14 13
17 17 C 1.30503 * 109.25413 * 359.97438 * 16 15 14
18 18 C 1.50700 * 125.64576 * 179.97438 * 17 16 15
19 19 C 1.52995 * 109.47340 * 270.00241 * 18 17 16
20 20 N 1.46898 * 109.47281 * 180.02562 * 19 18 17
21 21 H 1.08993 * 109.47772 * 179.97438 * 1 2 3
22 22 H 1.09005 * 109.47181 * 299.99730 * 1 2 3
23 23 H 1.08997 * 109.47239 * 59.99053 * 1 2 3
24 24 H 1.08994 * 109.47264 * 54.99400 * 4 2 1
25 25 H 1.09006 * 109.46892 * 175.00128 * 4 2 1
26 26 H 0.97005 * 120.00126 * 179.97438 * 8 7 5
27 27 H 1.07999 * 126.58807 * 359.70697 * 14 13 2
28 28 H 1.08001 * 125.98408 * 180.02562 * 15 14 13
29 29 H 1.09001 * 109.47157 * 30.00953 * 18 17 16
30 30 H 1.09001 * 109.46740 * 150.00187 * 18 17 16
31 31 H 1.08996 * 109.47140 * 300.00298 * 19 18 17
32 32 H 1.09001 * 109.47248 * 60.00257 * 19 18 17
33 33 H 1.00898 * 111.00318 * 56.04594 * 20 19 18
34 34 H 1.00899 * 111.00424 * 180.02562 * 20 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0400 -0.7214 1.2492
5 6 1.6414 0.0569 2.4765
6 1 1.0808 0.9744 2.3757
7 6 1.9933 -0.4019 3.7282
8 7 2.6764 -1.5191 3.8510
9 14 1.4986 0.5623 5.2497
10 1 0.7413 1.7735 4.8435
11 1 0.6452 -0.2874 6.1185
12 1 2.7164 0.9678 5.9964
13 7 2.0182 -0.6906 -1.1963
14 6 1.7692 -1.9915 -1.5417
15 6 2.4002 -2.2118 -2.7108
16 7 3.0173 -1.0763 -3.0698
17 6 2.7921 -0.1604 -2.1677
18 6 3.3116 1.2537 -2.2032
19 6 4.6681 1.3166 -1.4985
20 7 5.1743 2.6952 -1.5326
21 1 -0.3634 -1.0276 -0.0005
22 1 -0.3634 0.5138 0.8900
23 1 -0.3633 0.5140 -0.8899
24 1 1.6053 -1.7199 1.2950
25 1 3.1264 -0.7996 1.2055
26 1 2.9243 -1.8417 4.7316
27 1 1.1803 -2.7043 -0.9836
28 1 2.4073 -3.1400 -3.2630
29 1 3.4251 1.5732 -3.2392
30 1 2.6073 1.9124 -1.6951
31 1 4.5546 0.9971 -0.4626
32 1 5.3725 0.6580 -2.0067
33 1 4.5091 3.3348 -1.1245
34 1 6.0702 2.7631 -1.0735
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000695885966.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:34:42
Heat of formation + Delta-G solvation = 19.117541 kcal
Electronic energy + Delta-G solvation = -15440.596709 eV
Core-core repulsion = 12986.772209 eV
Total energy + Delta-G solvation = -2453.824500 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 223.138 amu
Computer time = 0.24 seconds
Orbital eigenvalues (eV)
-43.04867 -37.29389 -36.52429 -34.66270 -32.01594 -31.69841 -28.99781 -28.24373
-25.82307 -23.64230 -23.32248 -21.62073 -20.19903 -18.75502 -17.73261 -16.74213
-16.72490 -16.17613 -15.95325 -15.51557 -14.95096 -14.65093 -14.50378 -14.22490
-13.80252 -13.51568 -13.23410 -12.91969 -12.85882 -12.80281 -12.38300 -12.31385
-12.03513 -11.74168 -11.41639 -10.89454 -10.65339 -10.37296 -9.72315 -9.25820
-8.26683 -6.38735 1.18337 1.39219 1.40989 1.52652 1.96960 2.19020
2.38525 3.08690 3.33715 3.79505 3.85307 3.97057 4.08972 4.20280
4.23086 4.35898 4.48621 4.62331 4.67472 4.84701 4.92221 5.00595
5.03869 5.19441 5.31153 5.32487 5.61324 5.68521 5.89671 6.04699
6.10881 6.37517 6.55663 6.76150 7.18724 7.31708 8.85528
Molecular weight = 223.14amu
Principal moments of inertia in cm(-1)
A = 0.025046 B = 0.008294 C = 0.007054
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1117.674613 B = 3375.296244 C = 3968.694845
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.138 4.138
2 C 0.136 3.864
3 H 0.098 0.902
4 C 0.035 3.965
5 C -0.531 4.531
6 H 0.076 0.924
7 C 0.004 3.996
8 N -0.932 5.932
9 Si 0.964 3.036
10 H -0.254 1.254
11 H -0.281 1.281
12 H -0.283 1.283
13 N -0.441 5.441
14 C -0.058 4.058
15 C -0.050 4.050
16 N -0.521 5.521
17 C 0.188 3.812
18 C -0.023 4.023
19 C 0.075 3.925
20 N -0.844 5.844
21 H 0.053 0.947
22 H 0.082 0.918
23 H 0.065 0.935
24 H -0.001 1.001
25 H -0.017 1.017
26 H 0.263 0.737
27 H 0.177 0.823
28 H 0.189 0.811
29 H 0.105 0.895
30 H 0.088 0.912
31 H 0.010 0.990
32 H 0.065 0.935
33 H 0.349 0.651
34 H 0.352 0.648
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.767 5.737 -7.585 9.673
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.196 4.196
2 C 0.034 3.966
3 H 0.116 0.884
4 C -0.002 4.002
5 C -0.569 4.569
6 H 0.094 0.906
7 C -0.195 4.195
8 N -0.571 5.571
9 Si 0.789 3.211
10 H -0.178 1.178
11 H -0.207 1.207
12 H -0.209 1.209
13 N -0.122 5.122
14 C -0.193 4.193
15 C -0.198 4.198
16 N -0.240 5.240
17 C -0.075 4.075
18 C -0.062 4.062
19 C -0.057 4.057
20 N -0.375 5.375
21 H 0.072 0.928
22 H 0.101 0.899
23 H 0.084 0.916
24 H 0.017 0.983
25 H 0.001 0.999
26 H 0.072 0.928
27 H 0.194 0.806
28 H 0.206 0.794
29 H 0.123 0.877
30 H 0.107 0.893
31 H 0.028 0.972
32 H 0.084 0.916
33 H 0.162 0.838
34 H 0.166 0.834
Dipole moment (debyes) X Y Z Total
from point charges -1.296 5.731 -8.830 10.606
hybrid contribution -0.476 -0.526 2.842 2.929
sum -1.772 5.205 -5.988 8.129
Atomic orbital electron populations
1.21951 0.92191 1.02637 1.02838 1.21693 0.96385 0.96509 0.82002
0.88412 1.19174 0.94256 0.95281 0.91514 1.21462 1.35498 1.09054
0.90933 0.90638 1.25939 0.94840 0.95910 1.02788 1.70120 1.39609
1.22862 1.24552 0.85401 0.78008 0.79013 0.78677 1.17766 1.20735
1.20925 1.45897 1.37198 1.10544 1.18525 1.22927 1.08460 0.87442
1.00444 1.22608 1.01909 0.98379 0.96874 1.70156 1.24691 1.00961
1.28240 1.23502 0.98228 0.98365 0.87408 1.19914 0.95984 0.86367
1.03957 1.21524 0.95626 0.91340 0.97202 1.58707 1.08684 1.05349
1.64754 0.92781 0.89908 0.91590 0.98276 0.99911 0.92784 0.80605
0.79365 0.87689 0.89322 0.97207 0.91612 0.83772 0.83442
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -4.52 9.06 71.98 0.65 -3.87 16
2 C 0.14 5.12 2.94 44.99 0.13 5.25 16
3 H 0.10 3.48 6.67 -2.39 -0.02 3.46 16
4 C 0.04 1.73 4.46 29.85 0.13 1.86 16
5 C -0.53 -27.10 8.41 25.60 0.22 -26.89 16
6 H 0.08 3.56 7.06 -2.91 -0.02 3.54 16
7 C 0.00 0.20 5.46 84.65 0.46 0.66 16
8 N -0.93 -54.19 13.29 21.45 0.28 -53.91 16
9 Si 0.96 41.26 29.54 68.60 2.03 43.28 16
10 H -0.25 -10.08 7.11 99.48 0.71 -9.37 16
11 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16
12 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16
13 N -0.44 -16.26 2.61 -491.90 -1.28 -17.54 16
14 C -0.06 -2.07 10.70 83.09 0.89 -1.18 16
15 C -0.05 -1.71 11.87 83.52 0.99 -0.72 16
16 N -0.52 -19.51 11.25 -188.13 -2.12 -21.63 16
17 C 0.19 6.68 7.16 138.13 0.99 7.67 16
18 C -0.02 -0.66 5.62 29.85 0.17 -0.49 16
19 C 0.08 2.18 6.77 86.30 0.58 2.76 16
20 N -0.84 -19.24 9.62 -186.73 -1.80 -21.04 16
21 H 0.05 1.78 7.95 -2.39 -0.02 1.76 16
22 H 0.08 2.73 6.95 -2.38 -0.02 2.72 16
23 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16
24 H 0.00 -0.06 8.09 -2.39 -0.02 -0.08 16
25 H -0.02 -0.98 8.14 -2.38 -0.02 -1.00 16
26 H 0.26 14.48 8.31 -92.70 -0.77 13.71 16
27 H 0.18 5.73 8.06 -2.91 -0.02 5.71 16
28 H 0.19 5.18 8.06 -2.91 -0.02 5.15 16
29 H 0.10 2.84 8.14 -2.39 -0.02 2.82 16
30 H 0.09 2.26 7.08 -2.39 -0.02 2.25 16
31 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16
32 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16
33 H 0.35 6.91 8.99 -89.70 -0.81 6.10 16
34 H 0.35 7.05 9.08 -89.69 -0.81 6.24 16
Total: -1.00 -63.00 287.05 1.81 -61.20
By element:
Atomic # 1 Polarization: 25.08 SS G_CDS: -0.52 Total: 24.56 kcal
Atomic # 6 Polarization: -20.15 SS G_CDS: 5.22 Total: -14.93 kcal
Atomic # 7 Polarization: -109.20 SS G_CDS: -4.91 Total: -114.11 kcal
Atomic # 14 Polarization: 41.26 SS G_CDS: 2.03 Total: 43.28 kcal
Total: -63.00 1.81 -61.20 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000695885966.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 80.314 kcal
(2) G-P(sol) polarization free energy of solvation -63.004 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.310 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.808 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.197 kcal
(6) G-S(sol) free energy of system = (1) + (5) 19.118 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.24 seconds