Wall clock time and date at job start Mon Mar 30 2020 02:35:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47355 * 2 1 4 4 C 1.52999 * 109.47340 * 239.99842 * 2 1 3 5 5 C 1.50696 * 109.47718 * 175.00036 * 4 2 1 6 6 H 1.08003 * 119.99605 * 0.02562 * 5 4 2 7 7 C 1.37877 * 120.00517 * 180.27672 * 5 4 2 8 8 N 1.31511 * 120.00188 * 179.72659 * 7 5 4 9 9 Si 1.86806 * 119.99644 * 359.72359 * 7 5 4 10 10 H 1.48496 * 109.47223 * 89.99990 * 9 7 5 11 11 H 1.48502 * 109.46890 * 210.00324 * 9 7 5 12 12 H 1.48507 * 109.47082 * 329.99796 * 9 7 5 13 13 N 1.46898 * 109.47293 * 119.99554 * 2 1 3 14 14 C 1.46899 * 110.99640 * 56.53713 * 13 2 1 15 15 C 1.39210 * 111.00314 * 292.58234 * 13 2 1 16 16 C 1.36159 * 126.22314 * 107.14384 * 15 13 2 17 17 C 1.39776 * 107.81415 * 179.97438 * 16 15 13 18 18 N 1.30834 * 108.32586 * 0.02562 * 17 16 15 19 19 N 1.35251 * 126.21741 * 286.83187 * 15 13 2 20 20 C 1.46503 * 126.04349 * 0.03732 * 19 15 13 21 21 H 1.09001 * 109.46700 * 293.15008 * 1 2 3 22 22 H 1.09005 * 109.46791 * 53.14243 * 1 2 3 23 23 H 1.08992 * 109.47204 * 173.14771 * 1 2 3 24 24 H 1.09004 * 109.47379 * 54.99627 * 4 2 1 25 25 H 1.09005 * 109.46993 * 295.00293 * 4 2 1 26 26 H 0.97005 * 120.00112 * 179.97438 * 8 7 5 27 27 H 1.09000 * 109.47641 * 53.50759 * 14 13 2 28 28 H 1.09006 * 109.47062 * 173.50535 * 14 13 2 29 29 H 1.09006 * 109.47201 * 293.50237 * 14 13 2 30 30 H 1.08006 * 126.09164 * 359.97438 * 16 15 13 31 31 H 1.08002 * 125.83324 * 180.02562 * 17 16 15 32 32 H 1.09010 * 109.46998 * 93.41105 * 20 19 15 33 33 H 1.08999 * 109.47285 * 213.40685 * 20 19 15 34 34 H 1.08997 * 109.47223 * 333.41570 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6150 -1.3128 6 1 4.0790 -0.0862 -0.5392 7 6 4.2299 -1.1883 -2.3611 8 7 5.5401 -1.0909 -2.4193 9 14 3.3010 -2.1035 -3.6986 10 1 2.9339 -1.1571 -4.7825 11 1 4.1620 -3.1797 -4.2515 12 1 2.0685 -2.7012 -3.1250 13 7 2.0197 -0.6924 1.1995 14 6 1.4822 -2.0574 1.2756 15 6 1.7155 0.0285 2.3509 16 6 0.7688 -0.2933 3.2750 17 6 0.7892 0.6900 4.2683 18 7 1.7077 1.5687 3.9585 19 7 2.3107 1.1728 2.7579 20 6 3.3922 1.8761 2.0636 21 1 -0.3633 0.4040 0.9449 22 1 -0.3633 0.6165 -0.8223 23 1 -0.3633 -1.0202 -0.1226 24 1 1.6054 -0.2618 -2.1370 25 1 1.7516 -1.7716 -1.2055 26 1 6.0242 -1.4946 -3.1566 27 1 1.6950 -2.5842 0.3453 28 1 1.9487 -2.5857 2.1071 29 1 0.4041 -2.0152 1.4309 30 1 0.1180 -1.1547 3.2458 31 1 0.1551 0.7193 5.1421 32 1 2.9688 2.6396 1.4109 33 1 4.0482 2.3470 2.7957 34 1 3.9641 1.1650 1.4674 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695890353.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:10 Heat of formation + Delta-G solvation = 68.726757 kcal Electronic energy + Delta-G solvation = -15879.568982 eV Core-core repulsion = 13427.895699 eV Total energy + Delta-G solvation = -2451.673283 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.33151 -39.10525 -34.98052 -34.06795 -33.00847 -29.69840 -29.58323 -27.78078 -26.88848 -24.75626 -21.91395 -21.64167 -20.22673 -18.80655 -18.22723 -16.97181 -16.39925 -16.04810 -15.52554 -15.29529 -14.79347 -14.40197 -14.29343 -13.96292 -13.94882 -13.51388 -13.31529 -13.20081 -13.02978 -12.64716 -12.40116 -12.20739 -11.66718 -11.55236 -11.46222 -11.15830 -10.68373 -10.57085 -9.69450 -8.86266 -8.18206 -6.18464 0.96669 1.39349 1.41167 1.51059 1.55904 1.95503 2.42072 2.95638 3.19749 3.77342 3.98118 4.20130 4.30249 4.34785 4.41082 4.49423 4.53678 4.65573 4.71590 4.76981 4.84946 4.95176 5.04252 5.10554 5.15881 5.22359 5.40376 5.69569 5.75319 5.86413 6.06230 6.40437 6.52228 6.89082 6.91756 7.42927 8.98545 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.039266 B = 0.008424 C = 0.007626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.915381 B = 3322.929691 C = 3670.792956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.106 3.894 3 H 0.057 0.943 4 C -0.006 4.006 5 C -0.496 4.496 6 H 0.038 0.962 7 C 0.001 3.999 8 N -0.956 5.956 9 Si 0.941 3.059 10 H -0.272 1.272 11 H -0.292 1.292 12 H -0.242 1.242 13 N -0.484 5.484 14 C 0.035 3.965 15 C 0.272 3.728 16 C -0.325 4.325 17 C 0.060 3.940 18 N -0.336 5.336 19 N -0.384 5.384 20 C 0.105 3.895 21 H 0.056 0.944 22 H 0.069 0.931 23 H 0.071 0.929 24 H 0.027 0.973 25 H 0.032 0.968 26 H 0.261 0.739 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.061 0.939 30 H 0.164 0.836 31 H 0.216 0.784 32 H 0.075 0.925 33 H 0.097 0.903 34 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.424 0.447 8.052 14.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.000 4.000 3 H 0.075 0.925 4 C -0.043 4.043 5 C -0.535 4.535 6 H 0.056 0.944 7 C -0.194 4.194 8 N -0.598 5.598 9 Si 0.765 3.235 10 H -0.197 1.197 11 H -0.219 1.219 12 H -0.166 1.166 13 N -0.204 5.204 14 C -0.111 4.111 15 C 0.048 3.952 16 C -0.357 4.357 17 C -0.125 4.125 18 N -0.158 5.158 19 N -0.169 5.169 20 C -0.036 4.036 21 H 0.075 0.925 22 H 0.088 0.912 23 H 0.090 0.910 24 H 0.045 0.955 25 H 0.050 0.950 26 H 0.070 0.930 27 H 0.093 0.907 28 H 0.090 0.910 29 H 0.079 0.921 30 H 0.181 0.819 31 H 0.232 0.768 32 H 0.093 0.907 33 H 0.115 0.885 34 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -11.057 1.511 8.141 13.813 hybrid contribution -0.544 -0.982 -1.023 1.519 sum -11.601 0.529 7.118 13.621 Atomic orbital electron populations 1.22411 0.95312 1.03205 1.02338 1.21585 0.93137 0.96788 0.88478 0.92476 1.19700 0.94834 0.96585 0.93197 1.21257 0.91766 1.33164 1.07276 0.94405 1.25904 0.95430 0.97426 1.00639 1.70071 1.08563 1.47756 1.33378 0.85805 0.79503 0.78670 0.79497 1.19716 1.21875 1.16571 1.58465 1.59036 1.03526 0.99360 1.22459 0.98864 0.86422 1.03395 1.19689 0.92681 0.88239 0.94563 1.21550 1.06225 1.07477 1.00429 1.24185 0.96530 0.91642 1.00138 1.77291 1.14643 1.25144 0.98727 1.48574 1.29902 1.19914 1.18470 1.21831 0.87649 0.97365 0.96784 0.92496 0.91156 0.90988 0.95483 0.94987 0.93028 0.90652 0.90957 0.92090 0.81865 0.76756 0.90690 0.88480 0.90485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.03 8.39 71.98 0.60 -4.43 16 2 C 0.11 3.93 2.20 44.91 0.10 4.03 16 3 H 0.06 2.28 7.18 -2.39 -0.02 2.27 16 4 C -0.01 -0.25 3.39 29.85 0.10 -0.14 16 5 C -0.50 -27.03 9.39 25.60 0.24 -26.79 16 6 H 0.04 2.30 7.87 -2.91 -0.02 2.28 16 7 C 0.00 0.08 5.47 84.65 0.46 0.55 16 8 N -0.96 -59.10 13.96 21.45 0.30 -58.80 16 9 Si 0.94 42.77 27.46 68.60 1.88 44.65 16 10 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 11 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 12 H -0.24 -9.95 6.55 99.48 0.65 -9.29 16 13 N -0.48 -17.68 4.34 -702.75 -3.05 -20.73 16 14 C 0.04 1.09 7.95 127.69 1.02 2.10 16 15 C 0.27 9.28 5.14 131.42 0.68 9.96 16 16 C -0.32 -9.21 9.13 22.16 0.20 -9.00 16 17 C 0.06 1.61 12.01 85.21 1.02 2.64 16 18 N -0.34 -11.06 12.56 -57.09 -0.72 -11.78 16 19 N -0.38 -13.48 4.02 -366.64 -1.47 -14.95 16 20 C 0.11 3.45 10.48 127.77 1.34 4.79 16 21 H 0.06 1.60 6.80 -2.39 -0.02 1.59 16 22 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 23 H 0.07 1.88 6.90 -2.39 -0.02 1.86 16 24 H 0.03 1.14 7.56 -2.38 -0.02 1.12 16 25 H 0.03 1.34 5.19 -2.38 -0.01 1.33 16 26 H 0.26 15.24 8.31 -92.70 -0.77 14.47 16 27 H 0.07 2.49 6.00 -2.39 -0.01 2.48 16 28 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16 29 H 0.06 1.52 5.69 -2.38 -0.01 1.50 16 30 H 0.16 3.79 7.00 -2.91 -0.02 3.77 16 31 H 0.22 3.76 8.06 -2.91 -0.02 3.74 16 32 H 0.07 2.28 8.14 -2.38 -0.02 2.26 16 33 H 0.10 2.76 8.14 -2.39 -0.02 2.74 16 34 H 0.08 2.93 7.90 -2.39 -0.02 2.92 16 Total: -1.00 -66.64 273.69 3.73 -62.91 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: 1.02 Total: 15.00 kcal Atomic # 6 Polarization: -22.07 SS G_CDS: 5.76 Total: -16.30 kcal Atomic # 7 Polarization: -101.32 SS G_CDS: -4.94 Total: -106.26 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 1.88 Total: 44.65 kcal Total: -66.64 3.73 -62.91 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695890353.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.641 kcal (2) G-P(sol) polarization free energy of solvation -66.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds