Wall clock time and date at job start Mon Mar 30 2020 02:35:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47711 * 2 1 4 4 C 1.53004 * 109.47070 * 120.00187 * 2 1 3 5 5 C 1.50701 * 109.47211 * 185.00010 * 4 2 1 6 6 H 1.08002 * 119.99761 * 359.97438 * 5 4 2 7 7 C 1.37871 * 119.99694 * 180.27574 * 5 4 2 8 8 N 1.31514 * 120.00482 * 359.71466 * 7 5 4 9 9 Si 1.86801 * 119.99746 * 179.72062 * 7 5 4 10 10 H 1.48494 * 109.47230 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.47301 * 119.99669 * 9 7 5 12 12 H 1.48498 * 109.47430 * 239.99516 * 9 7 5 13 13 N 1.46904 * 109.46946 * 239.99657 * 2 1 3 14 14 C 1.46905 * 110.99997 * 306.04876 * 13 2 1 15 15 C 1.39208 * 111.00114 * 70.00660 * 13 2 1 16 16 C 1.36165 * 126.21830 * 0.02562 * 15 13 2 17 17 C 1.39779 * 107.81385 * 179.97438 * 16 15 13 18 18 N 1.30838 * 108.32144 * 0.02562 * 17 16 15 19 19 N 1.35249 * 126.21941 * 179.71643 * 15 13 2 20 20 C 1.46496 * 126.04365 * 0.03085 * 19 15 13 21 21 H 1.09000 * 109.46991 * 300.00620 * 1 2 3 22 22 H 1.09004 * 109.46837 * 59.99882 * 1 2 3 23 23 H 1.08998 * 109.47711 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47211 * 64.99037 * 4 2 1 25 25 H 1.09007 * 109.46376 * 304.99579 * 4 2 1 26 26 H 0.96995 * 120.00207 * 179.97438 * 8 7 5 27 27 H 1.09002 * 109.47190 * 60.00107 * 14 13 2 28 28 H 1.09000 * 109.46938 * 179.97438 * 14 13 2 29 29 H 1.08998 * 109.46959 * 299.99752 * 14 13 2 30 30 H 1.08001 * 126.09717 * 359.97438 * 16 15 13 31 31 H 1.08001 * 125.84208 * 180.02562 * 17 16 15 32 32 H 1.09004 * 109.46921 * 90.00769 * 20 19 15 33 33 H 1.08997 * 109.47455 * 209.99961 * 20 19 15 34 34 H 1.08994 * 109.47108 * 330.00793 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5419 -0.6150 1.3128 6 1 4.0790 -0.0862 0.5392 7 6 4.2307 -1.1981 2.3551 8 7 3.5767 -1.8422 3.2968 9 14 6.0930 -1.0730 2.4296 10 1 6.5847 -0.3025 1.2593 11 1 6.4930 -0.3814 3.6815 12 1 6.6821 -2.4359 2.4073 13 7 2.0196 -0.6926 -1.1994 14 6 1.4341 -2.0356 -1.3077 15 6 1.7669 0.0558 -2.3457 16 6 1.1526 1.2700 -2.3947 17 6 1.1006 1.6692 -3.7333 18 7 1.6585 0.7371 -4.4624 19 7 2.0923 -0.2884 -3.6126 20 6 2.7742 -1.5180 -4.0237 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 1.7515 -1.7715 1.2057 25 1 1.6053 -0.2617 2.1370 26 1 4.0614 -2.2527 4.0299 27 1 0.3489 -1.9550 -1.3693 28 1 1.8131 -2.5259 -2.2045 29 1 1.7058 -2.6222 -0.4301 30 1 0.7732 1.8256 -1.5499 31 1 0.6730 2.5897 -4.1025 32 1 2.0347 -2.2914 -4.2319 33 1 3.3609 -1.3253 -4.9219 34 1 3.4342 -1.8524 -3.2234 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695890354.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:12 Heat of formation + Delta-G solvation = 70.514159 kcal Electronic energy + Delta-G solvation = -15785.021392 eV Core-core repulsion = 13333.425616 eV Total energy + Delta-G solvation = -2451.595775 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.37007 -39.09799 -35.10420 -34.28806 -32.27387 -30.27975 -29.18117 -27.68336 -26.68210 -25.06957 -22.41664 -21.38566 -20.07954 -18.47732 -18.15662 -16.74091 -16.54792 -16.41996 -15.72043 -15.13462 -14.65599 -14.50227 -14.23435 -13.95772 -13.64754 -13.46879 -13.34619 -13.13529 -12.83565 -12.58370 -12.42928 -12.30813 -11.91597 -11.56840 -11.18170 -11.14397 -10.73810 -10.50200 -9.69996 -8.74522 -8.13261 -6.18332 0.99485 1.39095 1.41473 1.53341 1.56534 1.96718 2.44986 2.94101 3.22698 3.75904 4.05582 4.11805 4.32732 4.37103 4.41997 4.51206 4.53781 4.63096 4.68844 4.77143 4.89628 4.99254 5.05301 5.15196 5.26165 5.45381 5.51949 5.72445 5.85716 5.89036 6.06704 6.36694 6.51660 6.90143 6.94849 7.48098 8.98405 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.032276 B = 0.008178 C = 0.007503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.319473 B = 3423.005953 C = 3730.838384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.106 3.894 3 H 0.071 0.929 4 C 0.036 3.964 5 C -0.506 4.506 6 H 0.051 0.949 7 C 0.002 3.998 8 N -0.934 5.934 9 Si 0.952 3.048 10 H -0.271 1.271 11 H -0.281 1.281 12 H -0.281 1.281 13 N -0.469 5.469 14 C 0.022 3.978 15 C 0.275 3.725 16 C -0.339 4.339 17 C 0.064 3.936 18 N -0.335 5.335 19 N -0.390 5.390 20 C 0.096 3.904 21 H 0.068 0.932 22 H 0.075 0.925 23 H 0.056 0.944 24 H 0.007 0.993 25 H 0.005 0.995 26 H 0.260 0.740 27 H 0.047 0.953 28 H 0.083 0.917 29 H 0.072 0.928 30 H 0.154 0.846 31 H 0.213 0.787 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.351 1.865 -11.849 13.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.001 4.001 3 H 0.089 0.911 4 C -0.002 4.002 5 C -0.544 4.544 6 H 0.069 0.931 7 C -0.194 4.194 8 N -0.576 5.576 9 Si 0.778 3.222 10 H -0.195 1.195 11 H -0.207 1.207 12 H -0.207 1.207 13 N -0.187 5.187 14 C -0.124 4.124 15 C 0.051 3.949 16 C -0.371 4.371 17 C -0.122 4.122 18 N -0.157 5.157 19 N -0.176 5.176 20 C -0.045 4.045 21 H 0.087 0.913 22 H 0.094 0.906 23 H 0.075 0.925 24 H 0.025 0.975 25 H 0.023 0.977 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.101 0.899 29 H 0.090 0.910 30 H 0.171 0.829 31 H 0.230 0.770 32 H 0.106 0.894 33 H 0.117 0.883 34 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -4.400 1.166 -12.840 13.623 hybrid contribution 0.208 0.158 1.340 1.365 sum -4.192 1.324 -11.500 12.312 Atomic orbital electron populations 1.22530 0.95716 1.02459 1.03231 1.21712 0.93138 0.97332 0.87915 0.91072 1.19087 0.95053 0.94912 0.91116 1.21467 0.93322 1.32644 1.06980 0.93051 1.25749 1.02510 0.95522 0.95664 1.70065 1.36930 1.37553 1.13042 0.85596 0.81064 0.77709 0.77827 1.19531 1.20707 1.20681 1.58589 1.56707 1.03831 0.99564 1.22591 0.97900 0.88217 1.03687 1.19778 0.95169 0.95500 0.84423 1.21507 1.16414 1.00175 0.98995 1.24113 0.97520 0.98904 0.91619 1.77253 1.22128 0.99072 1.17247 1.48521 1.47905 1.18265 1.02869 1.22062 0.97448 0.82140 1.02819 0.91293 0.90623 0.92483 0.97469 0.97721 0.93082 0.93492 0.89860 0.90952 0.82874 0.77050 0.89435 0.88333 0.89516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.77 8.11 71.98 0.58 -5.18 16 2 C 0.11 4.17 1.82 44.91 0.08 4.26 16 3 H 0.07 2.92 7.14 -2.39 -0.02 2.90 16 4 C 0.04 1.76 4.36 29.85 0.13 1.89 16 5 C -0.51 -27.91 8.84 25.60 0.23 -27.69 16 6 H 0.05 2.87 7.74 -2.91 -0.02 2.85 16 7 C 0.00 0.13 5.46 84.65 0.46 0.60 16 8 N -0.93 -55.38 13.29 21.45 0.28 -55.10 16 9 Si 0.95 44.62 29.54 68.60 2.03 46.64 16 10 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 11 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 12 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 13 N -0.47 -17.48 4.44 -702.73 -3.12 -20.60 16 14 C 0.02 0.71 8.54 127.69 1.09 1.80 16 15 C 0.28 9.48 6.10 131.42 0.80 10.28 16 16 C -0.34 -10.65 8.16 22.16 0.18 -10.47 16 17 C 0.06 1.79 12.01 85.21 1.02 2.81 16 18 N -0.33 -10.61 12.56 -57.08 -0.72 -11.33 16 19 N -0.39 -12.38 4.02 -366.67 -1.47 -13.85 16 20 C 0.10 2.32 9.66 127.77 1.23 3.55 16 21 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 22 H 0.08 2.17 5.48 -2.38 -0.01 2.16 16 23 H 0.06 1.78 6.33 -2.39 -0.02 1.77 16 24 H 0.01 0.37 6.34 -2.39 -0.02 0.35 16 25 H 0.00 0.24 8.14 -2.38 -0.02 0.22 16 26 H 0.26 14.62 8.31 -92.71 -0.77 13.84 16 27 H 0.05 1.40 6.21 -2.39 -0.01 1.38 16 28 H 0.08 2.27 5.14 -2.39 -0.01 2.26 16 29 H 0.07 2.67 6.37 -2.39 -0.02 2.65 16 30 H 0.15 4.53 6.01 -2.91 -0.02 4.51 16 31 H 0.21 4.08 8.06 -2.91 -0.02 4.05 16 32 H 0.09 1.72 7.69 -2.38 -0.02 1.71 16 33 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.09 2.19 7.52 -2.39 -0.02 2.18 16 Total: -1.00 -65.45 271.01 3.91 -61.54 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: 1.09 Total: 10.85 kcal Atomic # 6 Polarization: -23.97 SS G_CDS: 5.82 Total: -18.16 kcal Atomic # 7 Polarization: -95.85 SS G_CDS: -5.02 Total: -100.88 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.64 kcal Total: -65.45 3.91 -61.54 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695890354.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.059 kcal (2) G-P(sol) polarization free energy of solvation -65.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds