Wall clock time and date at job start Mon Mar 30 2020 02:34:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.50703 * 109.46801 * 65.00219 * 4 2 1 6 6 H 1.07998 * 120.00413 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99680 * 179.97438 * 5 4 2 8 8 N 1.31523 * 119.99583 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 120.00273 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47042 * 89.99722 * 9 7 5 11 11 H 1.48506 * 109.47062 * 209.99913 * 9 7 5 12 12 H 1.48495 * 109.46994 * 329.99733 * 9 7 5 13 13 N 1.46499 * 109.46799 * 120.00100 * 2 1 3 14 14 C 1.34950 * 126.04099 * 34.71284 * 13 2 1 15 15 C 1.35315 * 107.74423 * 179.83807 * 14 13 2 16 16 C 1.50703 * 126.03581 * 180.15986 * 15 14 13 17 17 H 1.08997 * 109.47263 * 20.28832 * 16 15 14 18 18 C 1.53002 * 109.47352 * 260.29038 * 16 15 14 19 19 N 1.46897 * 109.46920 * 140.29088 * 16 15 14 20 20 C 1.39871 * 107.92375 * 0.42973 * 15 14 13 21 21 N 1.30831 * 108.19955 * 359.73088 * 20 15 14 22 22 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 24 24 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 25 25 H 1.09002 * 109.47069 * 184.99942 * 4 2 1 26 26 H 1.08991 * 109.47625 * 305.00262 * 4 2 1 27 27 H 0.97001 * 119.99531 * 179.97438 * 8 7 5 28 28 H 1.07998 * 126.12520 * 0.02562 * 14 13 2 29 29 H 1.09000 * 109.47354 * 59.99705 * 18 16 15 30 30 H 1.08996 * 109.47307 * 180.02562 * 18 16 15 31 31 H 1.09005 * 109.46721 * 300.00399 * 18 16 15 32 32 H 1.00904 * 111.00016 * 296.04327 * 19 16 15 33 33 H 1.00895 * 111.00371 * 60.00199 * 19 16 15 34 34 H 1.07996 * 125.89659 * 179.71517 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 1 1.0808 0.9745 -2.3757 7 6 1.9933 -0.4018 -3.7282 8 7 1.6458 0.2777 -4.7993 9 14 2.9637 -1.9885 -3.9027 10 1 2.0244 -3.1327 -4.0199 11 1 3.8127 -1.9183 -5.1191 12 1 3.8253 -2.1757 -2.7078 13 7 2.0183 -0.6906 1.1962 14 6 1.4372 -1.7526 1.7927 15 6 2.1966 -2.0928 2.8597 16 6 1.9261 -3.2266 3.8149 17 1 1.2574 -3.9470 3.3438 18 6 1.2722 -2.6786 5.0850 19 7 3.1916 -3.8872 4.1616 20 6 3.2734 -1.2024 2.9231 21 7 3.1676 -0.3615 1.9264 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 3.1264 -0.7995 -1.2055 26 1 1.6055 -1.7198 -1.2951 27 1 1.8938 -0.0449 -5.6799 28 1 0.5304 -2.2447 1.4736 29 1 0.3332 -2.1884 4.8278 30 1 1.0770 -3.4986 5.7760 31 1 1.9410 -1.9582 5.5561 32 1 3.6113 -4.3136 3.3492 33 1 3.8291 -3.2398 4.6002 34 1 4.0567 -1.2080 3.6666 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695894257.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:28 Heat of formation + Delta-G solvation = 59.563896 kcal Electronic energy + Delta-G solvation = -15182.178630 eV Core-core repulsion = 12730.108016 eV Total energy + Delta-G solvation = -2452.070614 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.00195 -36.35034 -34.98483 -32.49276 -30.11489 -29.41535 -28.32900 -27.63401 -23.99600 -22.44586 -21.61422 -19.68280 -19.29261 -17.20614 -16.20838 -15.81635 -14.91814 -14.59194 -14.15367 -14.06093 -13.77677 -13.45417 -12.81970 -12.57100 -12.21317 -11.93377 -11.83583 -11.71577 -11.33315 -11.31431 -11.01929 -10.47265 -10.31367 -10.16911 -9.97495 -9.42806 -8.99976 -8.88013 -8.69459 -8.00562 -6.20160 -4.20907 2.28946 2.96598 3.01192 3.20648 3.29444 3.34120 4.32045 4.63679 4.82167 5.09576 5.12691 5.28451 5.40137 5.43424 5.47499 5.58591 5.79140 5.81310 5.91571 6.12545 6.16899 6.24725 6.32040 6.36249 6.59937 6.85214 6.96872 7.08183 7.15338 7.39805 7.44239 7.63520 8.09361 8.31018 8.80329 9.40500 10.92104 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.038713 B = 0.006693 C = 0.006219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.093258 B = 4182.358376 C = 4501.424755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.161 3.839 3 H 0.097 0.903 4 C -0.016 4.016 5 C -0.524 4.524 6 H 0.078 0.922 7 C 0.074 3.926 8 N -0.895 5.895 9 Si 0.877 3.123 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.267 1.267 13 N -0.345 5.345 14 C 0.068 3.932 15 C -0.294 4.294 16 C 0.168 3.832 17 H 0.079 0.921 18 C -0.136 4.136 19 N -0.840 5.840 20 C 0.034 3.966 21 N -0.294 5.294 22 H 0.056 0.944 23 H 0.047 0.953 24 H 0.095 0.905 25 H 0.024 0.976 26 H 0.017 0.983 27 H 0.266 0.734 28 H 0.167 0.833 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.051 0.949 32 H 0.341 0.659 33 H 0.336 0.664 34 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.781 -5.932 15.251 16.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.061 3.939 3 H 0.116 0.884 4 C -0.054 4.054 5 C -0.562 4.562 6 H 0.096 0.904 7 C -0.128 4.128 8 N -0.533 5.533 9 Si 0.704 3.296 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.192 1.192 13 N -0.126 5.126 14 C -0.082 4.082 15 C -0.308 4.308 16 C 0.055 3.945 17 H 0.097 0.903 18 C -0.194 4.194 19 N -0.367 5.367 20 C -0.151 4.151 21 N -0.116 5.116 22 H 0.075 0.925 23 H 0.066 0.934 24 H 0.114 0.886 25 H 0.043 0.957 26 H 0.035 0.965 27 H 0.076 0.924 28 H 0.184 0.816 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.153 0.847 33 H 0.148 0.852 34 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -0.746 -5.290 14.799 15.734 hybrid contribution 0.620 -0.778 -0.641 1.183 sum -0.126 -6.069 14.158 15.405 Atomic orbital electron populations 1.22085 0.93281 1.02506 1.02874 1.21613 0.94414 0.97177 0.80702 0.88449 1.19966 0.97125 0.96142 0.92211 1.20878 1.36775 1.09958 0.88569 0.90357 1.24932 0.95197 0.96955 0.95754 1.69889 1.46231 1.39060 0.98155 0.86820 0.80748 0.84070 0.77966 1.20123 1.21052 1.19162 1.49372 1.17835 1.23260 1.22108 1.22276 0.99547 0.91777 0.94581 1.20936 1.00636 1.06064 1.03124 1.19605 0.91750 0.90656 0.92442 0.90293 1.21769 1.00230 1.00537 0.96876 1.59116 1.07526 1.37007 1.33090 1.23448 0.99214 0.94637 0.97816 1.77338 1.03595 1.23698 1.06926 0.92466 0.93432 0.88635 0.95731 0.96485 0.92426 0.81602 0.92473 0.92339 0.92991 0.84671 0.85155 0.81318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 8.64 37.16 0.32 -2.17 16 2 C 0.16 3.16 3.35 -67.93 -0.23 2.93 16 3 H 0.10 2.00 8.14 -51.93 -0.42 1.57 16 4 C -0.02 -0.38 3.84 -27.88 -0.11 -0.48 16 5 C -0.52 -14.09 8.96 -34.44 -0.31 -14.40 16 6 H 0.08 2.21 7.30 -52.49 -0.38 1.83 16 7 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 8 N -0.90 -26.61 13.96 55.43 0.77 -25.84 16 9 Si 0.88 21.41 27.47 -169.99 -4.67 16.74 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.27 -6.49 6.54 56.52 0.37 -6.12 16 13 N -0.35 -6.36 3.53 -54.86 -0.19 -6.55 16 14 C 0.07 1.06 10.50 -17.22 -0.18 0.88 16 15 C -0.29 -4.11 5.08 -105.05 -0.53 -4.64 16 16 C 0.17 1.90 3.80 -68.86 -0.26 1.64 16 17 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 18 C -0.14 -1.39 9.47 37.16 0.35 -1.03 16 19 N -0.84 -8.72 9.14 -5.65 -0.05 -8.77 16 20 C 0.03 0.52 11.40 -17.37 -0.20 0.32 16 21 N -0.29 -5.52 12.58 30.62 0.39 -5.13 16 22 H 0.06 0.88 7.15 -51.93 -0.37 0.51 16 23 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.09 1.72 6.95 -51.93 -0.36 1.35 16 25 H 0.02 0.62 7.20 -51.93 -0.37 0.24 16 26 H 0.02 0.39 7.57 -51.93 -0.39 0.00 16 27 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 28 H 0.17 2.19 7.26 -52.49 -0.38 1.81 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.34 3.52 9.06 -39.29 -0.36 3.16 16 33 H 0.34 3.15 8.19 -39.29 -0.32 2.83 16 34 H 0.17 2.00 7.66 -52.49 -0.40 1.60 16 LS Contribution 283.44 15.07 4.27 4.27 Total: -1.00 -30.14 283.44 -5.77 -35.92 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -5.05 Total: 4.33 kcal Atomic # 6 Polarization: -13.73 SS G_CDS: -1.24 Total: -14.97 kcal Atomic # 7 Polarization: -47.20 SS G_CDS: 0.91 Total: -46.29 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.67 Total: 16.74 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -30.14 -5.77 -35.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695894257.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.480 kcal (2) G-P(sol) polarization free energy of solvation -30.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds