Wall clock time and date at job start Mon Mar 30 2020 02:34:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.50703 * 109.46801 * 65.00219 * 4 2 1 6 6 H 1.07998 * 120.00413 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99680 * 179.97438 * 5 4 2 8 8 N 1.31523 * 119.99583 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 120.00273 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47042 * 89.99722 * 9 7 5 11 11 H 1.48506 * 109.47062 * 209.99913 * 9 7 5 12 12 H 1.48495 * 109.46994 * 329.99733 * 9 7 5 13 13 N 1.46499 * 109.46799 * 120.00100 * 2 1 3 14 14 C 1.34950 * 126.04099 * 34.71284 * 13 2 1 15 15 C 1.35315 * 107.74423 * 179.83807 * 14 13 2 16 16 C 1.50703 * 126.03581 * 180.15986 * 15 14 13 17 17 H 1.08997 * 109.47263 * 20.28832 * 16 15 14 18 18 C 1.53002 * 109.47352 * 260.29038 * 16 15 14 19 19 N 1.46897 * 109.46920 * 140.29088 * 16 15 14 20 20 C 1.39871 * 107.92375 * 0.42973 * 15 14 13 21 21 N 1.30831 * 108.19955 * 359.73088 * 20 15 14 22 22 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 24 24 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 25 25 H 1.09002 * 109.47069 * 184.99942 * 4 2 1 26 26 H 1.08991 * 109.47625 * 305.00262 * 4 2 1 27 27 H 0.97001 * 119.99531 * 179.97438 * 8 7 5 28 28 H 1.07998 * 126.12520 * 0.02562 * 14 13 2 29 29 H 1.09000 * 109.47354 * 59.99705 * 18 16 15 30 30 H 1.08996 * 109.47307 * 180.02562 * 18 16 15 31 31 H 1.09005 * 109.46721 * 300.00399 * 18 16 15 32 32 H 1.00904 * 111.00016 * 296.04327 * 19 16 15 33 33 H 1.00895 * 111.00371 * 60.00199 * 19 16 15 34 34 H 1.07996 * 125.89659 * 179.71517 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 1 1.0808 0.9745 -2.3757 7 6 1.9933 -0.4018 -3.7282 8 7 1.6458 0.2777 -4.7993 9 14 2.9637 -1.9885 -3.9027 10 1 2.0244 -3.1327 -4.0199 11 1 3.8127 -1.9183 -5.1191 12 1 3.8253 -2.1757 -2.7078 13 7 2.0183 -0.6906 1.1962 14 6 1.4372 -1.7526 1.7927 15 6 2.1966 -2.0928 2.8597 16 6 1.9261 -3.2266 3.8149 17 1 1.2574 -3.9470 3.3438 18 6 1.2722 -2.6786 5.0850 19 7 3.1916 -3.8872 4.1616 20 6 3.2734 -1.2024 2.9231 21 7 3.1676 -0.3615 1.9264 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 3.1264 -0.7995 -1.2055 26 1 1.6055 -1.7198 -1.2951 27 1 1.8938 -0.0449 -5.6799 28 1 0.5304 -2.2447 1.4736 29 1 0.3332 -2.1884 4.8278 30 1 1.0770 -3.4986 5.7760 31 1 1.9410 -1.9582 5.5561 32 1 3.6113 -4.3136 3.3492 33 1 3.8291 -3.2398 4.6002 34 1 4.0567 -1.2080 3.6666 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695894257.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:28 Heat of formation + Delta-G solvation = 38.527032 kcal Electronic energy + Delta-G solvation = -15183.090857 eV Core-core repulsion = 12730.108016 eV Total energy + Delta-G solvation = -2452.982841 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.24212 -37.61447 -36.28376 -34.48473 -31.52609 -30.60854 -29.35531 -29.17558 -25.63429 -23.56983 -23.13748 -20.85598 -20.68857 -19.14317 -17.54087 -16.73686 -16.63627 -15.83095 -15.73358 -15.35684 -14.96318 -14.70067 -14.68159 -13.92127 -13.60705 -13.24738 -13.10435 -12.91128 -12.74635 -12.62815 -12.30226 -12.08121 -11.97347 -11.84248 -11.51825 -11.39223 -10.84648 -10.35525 -9.77551 -9.18762 -8.36594 -6.41223 1.04350 1.27362 1.31339 1.41022 1.63503 1.87637 2.27673 2.98005 3.62005 3.79640 3.99374 4.02848 4.11557 4.29456 4.37426 4.46728 4.60955 4.72162 4.78958 4.87655 4.95343 5.07792 5.13004 5.16027 5.27775 5.36649 5.40840 5.46145 5.79453 6.11695 6.22747 6.33599 6.64668 6.66712 6.85061 7.23295 8.78779 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.038713 B = 0.006693 C = 0.006219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.093258 B = 4182.358376 C = 4501.424755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.169 3.831 3 H 0.077 0.923 4 C -0.007 4.007 5 C -0.523 4.523 6 H 0.052 0.948 7 C 0.018 3.982 8 N -0.939 5.939 9 Si 0.939 3.061 10 H -0.260 1.260 11 H -0.281 1.281 12 H -0.266 1.266 13 N -0.365 5.365 14 C 0.057 3.943 15 C -0.281 4.281 16 C 0.172 3.828 17 H 0.084 0.916 18 C -0.132 4.132 19 N -0.838 5.838 20 C 0.041 3.959 21 N -0.343 5.343 22 H 0.073 0.927 23 H 0.069 0.931 24 H 0.076 0.924 25 H 0.004 0.996 26 H 0.025 0.975 27 H 0.269 0.731 28 H 0.189 0.811 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.051 0.949 32 H 0.343 0.657 33 H 0.343 0.657 34 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.789 -7.955 17.148 18.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.068 3.932 3 H 0.095 0.905 4 C -0.045 4.045 5 C -0.562 4.562 6 H 0.070 0.930 7 C -0.180 4.180 8 N -0.579 5.579 9 Si 0.764 3.236 10 H -0.185 1.185 11 H -0.207 1.207 12 H -0.191 1.191 13 N -0.146 5.146 14 C -0.091 4.091 15 C -0.294 4.294 16 C 0.059 3.941 17 H 0.102 0.898 18 C -0.190 4.190 19 N -0.366 5.366 20 C -0.144 4.144 21 N -0.164 5.164 22 H 0.092 0.908 23 H 0.088 0.912 24 H 0.095 0.905 25 H 0.022 0.978 26 H 0.043 0.957 27 H 0.078 0.922 28 H 0.206 0.794 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.070 0.930 32 H 0.155 0.845 33 H 0.156 0.844 34 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -0.756 -7.326 16.725 18.275 hybrid contribution 0.641 -0.126 -1.122 1.298 sum -0.115 -7.452 15.603 17.292 Atomic orbital electron populations 1.21974 0.91059 1.03652 1.03014 1.21230 0.96023 0.95695 0.80220 0.90464 1.19791 0.95756 0.96313 0.92655 1.21138 1.35628 1.09255 0.90148 0.92989 1.25763 0.96384 1.00337 0.95538 1.70015 1.48053 1.41090 0.98787 0.85823 0.79530 0.80441 0.77814 1.18500 1.20707 1.19054 1.49143 1.18630 1.24574 1.22270 1.22822 1.00438 0.91040 0.94781 1.21300 0.99450 1.05959 1.02710 1.19674 0.92364 0.89735 0.92308 0.89767 1.21730 1.00105 1.00816 0.96362 1.59120 1.07496 1.36924 1.33047 1.24017 0.99791 0.93547 0.97039 1.77304 1.04600 1.25874 1.08642 0.90770 0.91215 0.90496 0.97812 0.95676 0.92231 0.79365 0.92415 0.91442 0.93003 0.84525 0.84398 0.78434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.51 8.64 71.98 0.62 -3.89 16 2 C 0.17 6.65 3.35 44.99 0.15 6.80 16 3 H 0.08 3.28 8.14 -2.39 -0.02 3.26 16 4 C -0.01 -0.31 3.84 29.85 0.11 -0.20 16 5 C -0.52 -28.75 8.96 25.60 0.23 -28.52 16 6 H 0.05 3.06 7.30 -2.91 -0.02 3.04 16 7 C 0.02 1.04 5.47 84.65 0.46 1.50 16 8 N -0.94 -56.95 13.96 21.45 0.30 -56.66 16 9 Si 0.94 44.09 27.47 68.60 1.88 45.97 16 10 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 11 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 12 H -0.27 -12.33 6.54 99.48 0.65 -11.68 16 13 N -0.37 -13.05 3.53 -327.49 -1.16 -14.21 16 14 C 0.06 1.64 10.50 83.54 0.88 2.52 16 15 C -0.28 -7.06 5.08 -20.14 -0.10 -7.17 16 16 C 0.17 3.32 3.80 44.17 0.17 3.49 16 17 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 18 C -0.13 -2.26 9.47 71.98 0.68 -1.58 16 19 N -0.84 -14.70 9.14 -171.80 -1.57 -16.27 16 20 C 0.04 1.16 11.40 85.24 0.97 2.13 16 21 N -0.34 -12.55 12.58 -57.03 -0.72 -13.27 16 22 H 0.07 2.13 7.15 -2.39 -0.02 2.11 16 23 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 24 H 0.08 2.78 6.95 -2.39 -0.02 2.77 16 25 H 0.00 0.18 7.20 -2.39 -0.02 0.16 16 26 H 0.02 1.12 7.57 -2.39 -0.02 1.11 16 27 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 28 H 0.19 4.38 7.26 -2.91 -0.02 4.36 16 29 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 32 H 0.34 6.03 9.06 -89.69 -0.81 5.22 16 33 H 0.34 5.29 8.19 -89.70 -0.74 4.56 16 34 H 0.20 4.10 7.66 -2.91 -0.02 4.08 16 Total: -1.00 -65.06 283.44 2.41 -62.65 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: -0.50 Total: 16.69 kcal Atomic # 6 Polarization: -29.09 SS G_CDS: 4.18 Total: -24.92 kcal Atomic # 7 Polarization: -97.26 SS G_CDS: -3.14 Total: -100.40 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 1.88 Total: 45.97 kcal Total: -65.06 2.41 -62.65 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695894257.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.177 kcal (2) G-P(sol) polarization free energy of solvation -65.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds